Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Reverse (-)

75150085 .. 75154061

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG524100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTATGGAGCCAGACACAAAAGAGAGCTGTCCTTTGAATCCCTAGCTCAAATCCCAATCTTGAGGCCGAGCATCCATGCCCGGAGGGCCAATCTCACCGTCAAGTTCCAGGACCTTTATGGGTTCACGGTGGAAGGGAATGTGGACGACGTCAATGTGTTGAACGAGGTGAGGGAGAAGGTGAGGCAGCAGGGGAGGGTTTGGTGGTCAATGGAGGCCAATAAAGGAGCCAATTGGTACTTGCACAAGTCCGTTTCAGAAGGCCAATCGCTTAAGGCTTCGCTAAAGTTTTCGGCTTTGGCCAATGCCATTACTCTCAAGAGGCTCATCAGGAAGGGGATTCCCCCGGTGCTCCGGCCCAAGGTCTGGTTTTCGCTTTCCGGGGCCGCCAAGAAGAAGTCCACCGTGCCGGACAGCTATTACAATGACTTGACCATTGCCGTGGAGGGCAAGGTCACACCTGCCACTAGGCAGATTGATCATGACCTGCCCCGTACCTTCCCTGGTCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTCGTCGCGTTCTTGTTGTGTATTCCTTCCGTGATTCGGATGTGGGTTATTGTCAGGGCTTAAATTATGTTGCAGCTCTGTTACTGCTTGTGATGAAGACAGAGGAAGATGCATTTTGGATGCTAGCTGTTCTCCTGGAAAATGTCTTGGTCAATGACTGTTATACAAATAATTTATCAGGATGCCATGTCGAACAAAGAGTTTTCAAGGATTTTCTTGCTAAAATGTGTCCAAGGGTAGCAGCGCATTTGGAAGCATTGGAGTTTGATGTATCCCTTGTTGCCACAGAGTGGTTTCTTTGCCTCTTTTCTAAGAGCTTGCCTTCAGAGGTTAGGGATACTTTTGACTCTCTCTCTCTTTGTTACTTTGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

306

Amino Acids

34.73

Weight (kDa)

8.44

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	118 - 291	1.3e-43	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	181 - 290	5.9e-21	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	2 cut(s)	469, 495
AccB7I	CCANNNNNTGG	2 cut(s)	366, 834
AccII	CGCG	1 cut(s)	552
AciI	CCGC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	852
AcyI	GRCGYC	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	834
AfaI	GTAC	2 cut(s)	239, 496
AfiI	CCNNNNNNNGG	5 cut(s)	361, 366, 517, 580, 834
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	38, 163, 751, 914
AjnI	CCWGG	3 cut(s)	108, 502, 678
AluBI	AGCT	6 cut(s)	28, 47, 417, 620, 671, 861
AluI	AGCT	6 cut(s)	28, 47, 417, 620, 671, 861
Alw21I	GWGCWC	1 cut(s)	354
AoxI	GGCC	7 cut(s)	65, 87, 216, 262, 300, 356, 384
ApeKI	GCWGC	4 cut(s)	187, 539, 617, 785
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	4 cut(s)	87, 112, 357, 384
AsuC2I	CCSGG	3 cut(s)	82, 347, 382
AsuHPI	GGTGA	4 cut(s)	88, 181, 193, 500
AsuNHI	GCTAGC	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	647
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	4 cut(s)	199, 526, 629, 797
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	3 cut(s)	110, 504, 680
BciVI	GTATCC	2 cut(s)	826, 874
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	3 cut(s)	82, 347, 382
BfaI	CTAG	3 cut(s)	44, 468, 668
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	2 cut(s)	469, 495
BfuI	GTATCC	2 cut(s)	826, 874
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
BlsI	GCNGC	5 cut(s)	189, 388, 541, 619, 787
Bme1390I	CCNGG	6 cut(s)	82, 110, 347, 382, 504, 680
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	87, 112, 357, 384
BmiI	GGNNCC	3 cut(s)	10, 229, 385
BmrFI	CCNGG	6 cut(s)	82, 110, 347, 382, 504, 680
BmsI	GCATC	4 cut(s)	81, 643, 654, 716
BmtI	GCTAGC	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	647
BpuEI	CTTGAG	2 cut(s)	82, 302
BpuMI	CCSGG	3 cut(s)	82, 347, 382
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	7 cut(s)	345, 360, 381, 441, 502, 512, 776
Bsc4I	CCNNNNNNNGG	5 cut(s)	361, 366, 517, 580, 834
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	110, 504, 680
BseDI	CCNNGG	7 cut(s)	345, 360, 381, 441, 502, 512, 776
BseGI	GGATG	4 cut(s)	72, 589, 669, 731
BseLI	CCNNNNNNNGG	5 cut(s)	361, 366, 517, 580, 834
BseMI	GCAATG	1 cut(s)	435
BseXI	GCAGC	4 cut(s)	199, 526, 629, 797
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	5 cut(s)	82, 347, 355, 381, 410
BslI	CCNNNNNNNGG	5 cut(s)	361, 366, 517, 580, 834
BsnI	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	478
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
BspFNI	CGCG	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	10, 229, 385
BspMI	ACCTGC	2 cut(s)	469, 495
BspOI	GCTAGC	1 cut(s)	671
BspQI	GCTCTTC	1 cut(s)	549
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	7 cut(s)	345, 360, 381, 441, 502, 512, 776
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	360, 512, 776
Bst2UI	CCWGG	3 cut(s)	110, 504, 680
Bst4CI	ACNGT	4 cut(s)	100, 130, 406, 704
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	669, 863
BstDEI	CTNAG	1 cut(s)	855
BstDSI	CCRYGG	2 cut(s)	441, 512
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	4 cut(s)	72, 589, 669, 731
BstFNI	CGCG	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	1 cut(s)	481
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	3 cut(s)	110, 504, 680
BstNSI	RCATGY	1 cut(s)	539
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	6 cut(s)	80, 108, 345, 380, 502, 678
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	4 cut(s)	199, 526, 629, 797
BstV2I	GAAGAC	1 cut(s)	647
BstXI	CCANNNNNNTGG	1 cut(s)	442
BsuI	GTATCC	2 cut(s)	826, 874
BsuRI	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
BtgI	CCRYGG	2 cut(s)	441, 512
BtsCI	GGATG	4 cut(s)	72, 589, 669, 731
BveI	ACCTGC	2 cut(s)	469, 495
Cac8I	GCNNGC	2 cut(s)	669, 863
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	790
Cfr13I	GGNCC	4 cut(s)	87, 112, 357, 384
Csp6I	GTAC	2 cut(s)	238, 495
CviAII	CATG	5 cut(s)	77, 482, 513, 536, 731
CviQI	GTAC	2 cut(s)	238, 495
DdeI	CTNAG	1 cut(s)	855
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DraIII	CACNNNGTG	1 cut(s)	834
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	3 cut(s)	360, 512, 776
Eco47I	GGWCC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	852
Eco91I	GGTNACC	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	3 cut(s)	108, 502, 678
EcoT14I	CCWWGG	3 cut(s)	360, 512, 776
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	3 cut(s)	360, 512, 776
FaeI	CATG	5 cut(s)	80, 485, 516, 539, 734
FatI	CATG	5 cut(s)	76, 481, 512, 535, 730
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
FokI	GGATG	4 cut(s)	59, 596, 676, 738
Fsp4HI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
FspBI	CTAG	3 cut(s)	44, 468, 668
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
HaeIII	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
HapII	CCGG	5 cut(s)	82, 347, 355, 381, 410
HhaI	GCGC	1 cut(s)	790
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	5 cut(s)	80, 485, 516, 539, 734
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HinfI	GANTC	4 cut(s)	38, 340, 578, 890
HpaII	CCGG	5 cut(s)	82, 347, 355, 381, 410
HphI	GGTGA	4 cut(s)	88, 181, 193, 500
Hpy166II	GTNNAC	3 cut(s)	126, 145, 402
Hpy188I	TCNGA	3 cut(s)	259, 583, 871
Hpy188III	TCNNGA	5 cut(s)	61, 319, 331, 482, 723
Hpy8I	GTNNAC	3 cut(s)	126, 145, 402
Hpy99I	CGWCG	2 cut(s)	152, 552
HpyAV	CCTTC	8 cut(s)	128, 172, 254, 328, 508, 524, 580, 876
HpyCH4III	ACNGT	4 cut(s)	100, 130, 406, 704
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	244, 617, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	855
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	5 cut(s)	80, 485, 516, 539, 734
HspAI	GCGC	1 cut(s)	788
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	478
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	3 cut(s)	8, 227, 357
Lsp1109I	GCAGC	4 cut(s)	199, 526, 629, 797
LweI	GCATC	4 cut(s)	81, 643, 654, 716
MaeI	CTAG	3 cut(s)	44, 468, 668
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	454, 506, 624, 905
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	4 cut(s)	406, 536, 652, 662
MfeI	CAATTG	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	3 cut(s)	232, 607, 715
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	1 cut(s)	498
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	2 cut(s)	273, 605
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	5 cut(s)	82, 347, 355, 381, 410
MspR9I	CCNGG	6 cut(s)	82, 110, 347, 382, 504, 680
MunI	CAATTG	1 cut(s)	232
MvaI	CCWGG	3 cut(s)	110, 504, 680
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	3 cut(s)	82, 347, 382
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	1 cut(s)	478
NheI	GCTAGC	1 cut(s)	667
NlaIII	CATG	5 cut(s)	80, 485, 516, 539, 734
NlaIV	GGNNCC	3 cut(s)	10, 229, 385
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	454, 506
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	1 cut(s)	539
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	38, 340, 578
PflFI	GACNNNGTC	1 cut(s)	149
PflMI	CCANNNNNTGG	2 cut(s)	366, 834
PfoI	TCCNGGA	2 cut(s)	108, 678
PkrI	GCNGC	5 cut(s)	189, 388, 541, 619, 787
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	3 cut(s)	108, 502, 678
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	3 cut(s)	108, 502, 678
PspN4I	GGNNCC	3 cut(s)	10, 229, 385
PspPI	GGNCC	4 cut(s)	87, 112, 357, 384
PspPPI	RGGWCCY	1 cut(s)	112
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	239, 496
RsaNI	GTAC	2 cut(s)	238, 495
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	273, 605
SatI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	4 cut(s)	87, 112, 357, 384
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	6 cut(s)	82, 110, 347, 382, 504, 680
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	4 cut(s)	81, 643, 654, 716
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	3 cut(s)	61, 272, 317
SmoI	CTYRAG	3 cut(s)	61, 272, 317
Sse9I	AATT	3 cut(s)	232, 607, 715
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	3 cut(s)	44, 468, 668
StyD4I	CCNGG	6 cut(s)	80, 108, 345, 380, 502, 678
StyI	CCWWGG	3 cut(s)	360, 512, 776
TaaI	ACNGT	4 cut(s)	100, 130, 406, 704
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	735
TasI	AATT	3 cut(s)	232, 607, 715
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	38, 340, 578
Tru1I	TTAA	2 cut(s)	273, 605
Tru9I	TTAA	2 cut(s)	273, 605
TseFI	GTSAC	2 cut(s)	454, 506
TseI	GCWGC	4 cut(s)	187, 539, 617, 785
Tsp45I	GTSAC	2 cut(s)	454, 506
TspDTI	ATGAA	1 cut(s)	653
TspGWI	ACGGA	2 cut(s)	241, 563
Tth111I	GACNNNGTC	1 cut(s)	149
Van91I	CCANNNNNTGG	2 cut(s)	366, 834
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	3 cut(s)	44, 468, 668
ZraI	GACGTC	1 cut(s)	151
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.