Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Reverse (-)

21300587 .. 21304633

Gene Structure 4047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G205400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTTTGGAACTCAAAGCCAGAGAGACCTCTCCTTAGAATTCCAATCCCAAATACCAATTTTGAGGCCTAGCATCCATACCAGGAGGGCTAATCTTACAGTAAAGTTCCAAGACCTTTATGGGTTCACAGTAGAAGGGAATGTAGATGATGTTAATGTGTTGAATGAGGTGAGAGAGAAGGTGAGGCAACAAGGACGGGTGTGGTGGTCATTGGAGGCTAACAAAGGTGCAAATTGGTACTTGCAGCCTTCCATATCTGAAGGAATTGCCCTTAAATCTTCGCTAAAATTTTCAGCTTTGGCCAATGCCATTACTTTGAAGAGGCTGATTAGGAAGGGAATTCCACCTGTTCTTCGGCCCAAGGTGTGGTTTTCGTTGTCTGGGGCGGCCAAGAAGAAGTCCACGGTACCTGAGAGCTATTACAACGATTTGATAAAGGCCACTGAGGGCAAGGTCACCCCTGCCACTAGGCAGATTGATCATGACCTGCCGCGTACCTTCCCAGGTCACCCATGGTTAGACACCCCAGAGGGTCATGCTGCTCTTCGACGTGTCCTTGTTGGGTATTCTTTCCGTGATTCTGATGTTGGCTACTGTCAGGGCTTAAATTATGTTGCAGCATTGTTACTGCTTGTGATGAAAACAGAGGAAGATGCATTTTGGATGCTAGCAGTCCTGTTGGAAAATGTGTTGGTTAATGACTGCTATACAAATAATTTATCAGGATGCCATGTTGAACAAAGAGTTTTCAAGGATTTCCTTGCTAAAAAGTGCCCAAGGATAGCAATGCATTTGGAAGCAATGGAGTTTGATGTCTCCCTTGTTGCCACTGAGTGGTTTCTCTGCCTCTTTTCCAAAAGCTTGCCTTCAGAGACTACTCTAAGGGTATGGGATATCCTTTTCTACGAGGGGGCTAAAGTTATTCTTCATGTGGCTTTGGCAATCTTTAAGATGAAGGAAGAGCAGTTGCTCATAACCCACCATGTTGGTGATGTAATTAGTATTCTGCAGAGAACTACTCATCACCTGTTTGATCCAGAAGAGCTATTGACGGTGGCATTTGATAAGATAGGTTCAATGACAACCAACAATATATCAAAGCAAAGGAAAAAGCAAGAACCAGCAGTGATGAAGGAACTTGATCAGAGATTTAGACGGCTAAATTCCCTAAAGTTGGATGACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

396

Amino Acids

45.13

Weight (kDa)

8.91

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	495
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	406
AccB7I	CCANNNNNTGG	2 cut(s)	366, 834
AccII	CGCG	1 cut(s)	493
AciI	CCGC	2 cut(s)	386, 491
AclWI	GGATC	1 cut(s)	1028
AcoI	YGGCCR	2 cut(s)	300, 387
AcsI	RAATTY	4 cut(s)	38, 287, 339, 1162
AcuI	CTGAAG	2 cut(s)	279, 852
AdeI	CACNNNGTG	1 cut(s)	834
AfaI	GTAC	3 cut(s)	239, 408, 496
AfiI	CCNNNNNNNGG	3 cut(s)	366, 834, 1174
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	5 cut(s)	163, 319, 737, 751, 1077
AjiI	CACGTC	1 cut(s)	551
AjnI	CCWGG	2 cut(s)	80, 502
AluBI	AGCT	4 cut(s)	296, 417, 861, 1045
AluI	AGCT	4 cut(s)	296, 417, 861, 1045
Alw26I	GTCTC	3 cut(s)	18, 820, 866
AlwI	GGATC	1 cut(s)	1028
AoxI	GGCC	5 cut(s)	65, 300, 356, 387, 438
ApeKI	GCWGC	3 cut(s)	244, 539, 617
ApoI	RAATTY	4 cut(s)	38, 287, 339, 1162
Asp718I	GGTACC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	6 cut(s)	181, 193, 448, 500, 1001, 1016
AsuNHI	GCTAGC	1 cut(s)	667
BaeGI	GKGCMC	1 cut(s)	776
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	406
BbvI	GCAGC	3 cut(s)	256, 526, 629
BceAI	ACGGC	1 cut(s)	1172
BciT130I	CCWGG	2 cut(s)	82, 504
BclI	TGATCA	2 cut(s)	478, 1141
BcoDI	GTCTC	3 cut(s)	18, 820, 866
BfaI	CTAG	3 cut(s)	69, 468, 668
BfmI	CTRYAG	1 cut(s)	1007
BfuAI	ACCTGC	1 cut(s)	495
BisI	GCNGC	5 cut(s)	245, 387, 491, 540, 618
BlsI	GCNGC	5 cut(s)	246, 388, 492, 541, 619
Bme1390I	CCNGG	2 cut(s)	82, 504
BmgBI	CACGTC	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	2 cut(s)	82, 504
BmsI	GCATC	4 cut(s)	81, 643, 654, 716
BmtI	GCTAGC	1 cut(s)	671
BplI	GAGNNNNNCTC	2 cut(s)	1003, 1035
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	5 cut(s)	360, 402, 502, 512, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 834, 1174
Bse3DI	GCAATG	2 cut(s)	792, 807
BseBI	CCWGG	2 cut(s)	82, 504
BseDI	CCNNGG	5 cut(s)	360, 402, 502, 512, 776
BseGI	GGATG	4 cut(s)	72, 669, 731, 1183
BseLI	CCNNNNNNNGG	3 cut(s)	366, 834, 1174
BseMI	GCAATG	2 cut(s)	792, 807
BseMII	CTCAG	3 cut(s)	402, 435, 822
BseSI	GKGCMC	1 cut(s)	776
BseXI	GCAGC	3 cut(s)	256, 526, 629
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	5 cut(s)	67, 302, 358, 389, 440
BshNI	GGYRCC	1 cut(s)	406
BslI	CCNNNNNNNGG	3 cut(s)	366, 834, 1174
BsmAI	GTCTC	3 cut(s)	18, 820, 866
BsnI	GGCC	5 cut(s)	67, 302, 358, 389, 440
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp143I	GATC	3 cut(s)	478, 1033, 1141
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	2 cut(s)	386, 491
BspANI	GGCC	5 cut(s)	67, 302, 358, 389, 440
BspCNI	CTCAG	3 cut(s)	403, 436, 823
BspFNI	CGCG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	1011
BspMI	ACCTGC	1 cut(s)	495
BspOI	GCTAGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	1028
BspQI	GCTCTTC	3 cut(s)	549, 954, 1035
BspT107I	GGYRCC	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	18
BsrDI	GCAATG	2 cut(s)	792, 807
BssECI	CCNNGG	5 cut(s)	360, 402, 502, 512, 776
BssMI	GATC	3 cut(s)	478, 1033, 1141
BssT1I	CCWWGG	3 cut(s)	360, 512, 776
Bst2UI	CCWGG	2 cut(s)	82, 504
Bst4CI	ACNGT	5 cut(s)	100, 130, 406, 596, 1054
Bst6I	CTCTTC	4 cut(s)	314, 549, 954, 1035
BstC8I	GCNNGC	2 cut(s)	669, 863
BstDEI	CTNAG	5 cut(s)	34, 411, 444, 831, 881
BstDSI	CCRYGG	2 cut(s)	402, 512
BstEII	GGTNACC	2 cut(s)	454, 506
BstF5I	GGATG	4 cut(s)	72, 669, 731, 1183
BstFNI	CGCG	1 cut(s)	493
BstKTI	GATC	3 cut(s)	481, 1036, 1144
BstMAI	GTCTC	3 cut(s)	18, 820, 866
BstMBI	GATC	3 cut(s)	478, 1033, 1141
BstNI	CCWGG	2 cut(s)	82, 504
BstPI	GGTNACC	2 cut(s)	454, 506
BstSCI	CCNGG	2 cut(s)	80, 502
BstSFI	CTRYAG	1 cut(s)	1007
BstSLI	GKGCMC	1 cut(s)	776
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	3 cut(s)	256, 526, 629
BstXI	CCANNNNNNTGG	1 cut(s)	986
BsuRI	GGCC	5 cut(s)	67, 302, 358, 389, 440
BtgI	CCRYGG	2 cut(s)	402, 512
BtrI	CACGTC	1 cut(s)	551
BtsCI	GGATG	4 cut(s)	72, 669, 731, 1183
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	3 cut(s)	441, 828, 1131
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	669, 863
CciI	TCATGA	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	238, 407, 495
CviAII	CATG	6 cut(s)	482, 513, 536, 731, 929, 983
CviQI	GTAC	3 cut(s)	238, 407, 495
DdeI	CTNAG	5 cut(s)	34, 411, 444, 831, 881
DpnI	GATC	3 cut(s)	480, 1035, 1143
DpnII	GATC	3 cut(s)	478, 1033, 1141
DraIII	CACNNNGTG	1 cut(s)	834
EaeI	YGGCCR	2 cut(s)	300, 387
Eam1104I	CTCTTC	4 cut(s)	314, 549, 954, 1035
EarI	CTCTTC	4 cut(s)	314, 549, 954, 1035
Eco130I	CCWWGG	3 cut(s)	360, 512, 776
Eco147I	AGGCCT	1 cut(s)	67
Eco31I	GGTCTC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	895
Eco57I	CTGAAG	2 cut(s)	279, 852
Eco91I	GGTNACC	2 cut(s)	454, 506
EcoO65I	GGTNACC	2 cut(s)	454, 506
EcoRI	GAATTC	2 cut(s)	38, 339
EcoRII	CCWGG	2 cut(s)	80, 502
EcoRV	GATATC	1 cut(s)	895
EcoT14I	CCWWGG	3 cut(s)	360, 512, 776
EcoT22I	ATGCAT	2 cut(s)	658, 792
ErhI	CCWWGG	3 cut(s)	360, 512, 776
FaeI	CATG	6 cut(s)	485, 516, 539, 734, 932, 986
FalI	AAGNNNNNCTT	4 cut(s)	850, 882, 909, 941
FatI	CATG	6 cut(s)	481, 512, 535, 730, 928, 982
FbaI	TGATCA	2 cut(s)	478, 1141
Fnu4HI	GCNGC	5 cut(s)	245, 387, 491, 540, 618
FokI	GGATG	3 cut(s)	59, 676, 738
Fsp4HI	GCNGC	5 cut(s)	245, 387, 491, 540, 618
FspBI	CTAG	3 cut(s)	69, 468, 668
GluI	GCNGC	5 cut(s)	245, 387, 491, 540, 618
HaeIII	GGCC	5 cut(s)	67, 302, 358, 389, 440
Hin1II	CATG	6 cut(s)	485, 516, 539, 734, 932, 986
HindIII	AAGCTT	1 cut(s)	859
HinfI	GANTC	1 cut(s)	578
HphI	GGTGA	6 cut(s)	181, 193, 448, 500, 1001, 1016
Hpy166II	GTNNAC	2 cut(s)	126, 402
Hpy188I	TCNGA	4 cut(s)	259, 583, 871, 1146
Hpy188III	TCNNGA	3 cut(s)	482, 723, 1037
Hpy8I	GTNNAC	2 cut(s)	126, 402
Hpy99I	CGWCG	1 cut(s)	552
HpyAV	CCTTC	9 cut(s)	128, 172, 254, 258, 328, 508, 876, 949, 1126
HpyCH4III	ACNGT	5 cut(s)	100, 130, 406, 596, 1054
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	6 cut(s)	230, 244, 617, 656, 790, 1009
HpyF3I	CTNAG	5 cut(s)	34, 411, 444, 831, 881
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	6 cut(s)	485, 516, 539, 734, 932, 986
KpnI	GGTACC	1 cut(s)	410
Ksp22I	TGATCA	2 cut(s)	478, 1141
Kzo9I	GATC	3 cut(s)	478, 1033, 1141
LguI	GCTCTTC	3 cut(s)	549, 954, 1035
Lsp1109I	GCAGC	3 cut(s)	256, 526, 629
LweI	GCATC	4 cut(s)	81, 643, 654, 716
MaeI	CTAG	3 cut(s)	69, 468, 668
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	3 cut(s)	454, 506, 624
MalI	GATC	3 cut(s)	480, 1035, 1143
MboI	GATC	3 cut(s)	478, 1033, 1141
MboII	GAAGA	9 cut(s)	270, 331, 344, 406, 536, 662, 917, 971, 1052
MhlI	GDGCHC	1 cut(s)	776
MlsI	TGGCCA	1 cut(s)	302
MluNI	TGGCCA	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	660, 1155
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	2 cut(s)	658, 792
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	5 cut(s)	153, 273, 605, 696, 948
MslI	CAYNNNNRTG	1 cut(s)	987
Msp20I	TGGCCA	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	82, 504
MvaI	CCWGG	2 cut(s)	82, 504
MvnI	CGCG	1 cut(s)	493
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	3 cut(s)	478, 1033, 1141
NheI	GCTAGC	1 cut(s)	667
NlaIII	CATG	6 cut(s)	485, 516, 539, 734, 932, 986
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	2 cut(s)	454, 506
NsiI	ATGCAT	2 cut(s)	658, 792
PagI	TCATGA	1 cut(s)	481
PceI	AGGCCT	1 cut(s)	67
PciSI	GCTCTTC	3 cut(s)	549, 954, 1035
PfeI	GAWTC	1 cut(s)	578
PflMI	CCANNNNNTGG	2 cut(s)	366, 834
PkrI	GCNGC	5 cut(s)	246, 388, 492, 541, 619
Psp6I	CCWGG	2 cut(s)	80, 502
PspEI	GGTNACC	2 cut(s)	454, 506
PspGI	CCWGG	2 cut(s)	80, 502
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	1011
RsaI	GTAC	3 cut(s)	239, 408, 496
RsaNI	GTAC	3 cut(s)	238, 407, 495
RseI	CAYNNNNRTG	1 cut(s)	987
SapI	GCTCTTC	3 cut(s)	549, 954, 1035
SaqAI	TTAA	5 cut(s)	153, 273, 605, 696, 948
SatI	GCNGC	5 cut(s)	245, 387, 491, 540, 618
Sau3AI	GATC	3 cut(s)	478, 1033, 1141
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	82, 504
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	4 cut(s)	81, 643, 654, 716
SfcI	CTRYAG	1 cut(s)	1007
SmiMI	CAYNNNNRTG	1 cut(s)	987
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	2 cut(s)	386, 491
SspMI	CTAG	3 cut(s)	69, 468, 668
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	80, 502
StyI	CCWWGG	3 cut(s)	360, 512, 776
TaaI	ACNGT	5 cut(s)	100, 130, 406, 596, 1054
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	1 cut(s)	547
TauI	GCSGC	2 cut(s)	389, 493
TfiI	GAWTC	1 cut(s)	578
Tru1I	TTAA	5 cut(s)	153, 273, 605, 696, 948
Tru9I	TTAA	5 cut(s)	153, 273, 605, 696, 948
TscAI	CASTG	3 cut(s)	448, 835, 1131
TseFI	GTSAC	2 cut(s)	454, 506
TseI	GCWGC	3 cut(s)	244, 539, 617
Tsp45I	GTSAC	2 cut(s)	454, 506
TspDTI	ATGAA	4 cut(s)	653, 917, 968, 1145
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	3 cut(s)	448, 835, 1131
Van91I	CCANNNNNTGG	2 cut(s)	366, 834
XapI	RAATTY	4 cut(s)	38, 287, 339, 1162
XcmI	CCANNNNNNNNNTGG	2 cut(s)	116, 510
XspI	CTAG	3 cut(s)	69, 468, 668
Zsp2I	ATGCAT	2 cut(s)	658, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.