Rw2G043350

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
69726041 .. 69729884
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043350.1

Sequence Viewer

Length: 1224 bp
ATGTATGGAGCCAGACACAAAAGAGAGCTGTCCTTTGAATCCCTAGCTCAAATCCCAATCTTGAGGCCGAGCATCCATGCCCGGAGGGCCAATCTCACCGTCAAGTTCCAGGACCTTTATGGGTTCACGGTGGAAGGGAATGTGGACGACGTCAATGTGTTGAACGAGGTGAGGGAGAAGGTGAGGCAGCAGGGGAGGGTTTGGTGGTCAATGGAGGCCAATAAAGGAGCCAATTGGTACTTGCACAAGTCCGTTTCGGAAGGCCAATCGCTTAAGGCTTCGCTAAAGTTTTCGGCTTTGGCCAATGCCATTACTCTCAAGAGGCTCATCAGGAAGGGGATTCCCCCGGTGCTCCGGCCCAAGGTCTGGTTTTCGCTTTCCGGGGCCGCCAAGAAGAAGTCCACCGTGCCGGACAGCTATTACAATGACTTGACCATTGCCGTGGAGGGCAAGGTCACACCTGCCACTAGGCAGATTGATCATGACCTGCCCCGTACCTTCCCTGGCCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTCGTCGCGTTCTTGTTGTGTATTCGTTCCGTGATTCGGATGTGGGTTATTGTCAGGGCTTAAATTATGTTGCAGCACTGTTACTGCTTGTGATGAAAACAGAGGAAGATGCATTTTGGATGCTAGCTGTTCTCCTGGAAAATGTCTTGGTCAATGACTGTTATACAAATAATTTATCAGGATGCCATGTCGAACAAAGAGTTTTCAAGGATTTTCTTGCTAAAATGTGTCCAAGGGTAGCGGCACATTTGGAAGCATTGGAGTTTGATGTATCCCTTGTTGCCACAGAGTGGTTTCTTTGCCTCTTTTCTAAGAGCTTGCCTTCAGAGACTACTCTAAGGGTATGGGATGTCCTTTTCTACGAAGGGGCCAAAGTTATGTTTCATGTGGCTTTGGCAATCTTTAAGATGAAGGAACAGGAGTTGCTTCTAACCCATCATGTTGGCGATGTAATTAATATTCTGCAGAAAACCACTCATCATCTATTTGATCCTGATGAGCTATTGACGGTAGCATTTGATCAGATAGGTTCGTTTACAACCAACACTATATCAAAGCAAAGGAAAAAACAAGAACCGGCAGTGATGAAGGAGCTTGATCAGAGAGTTCAACGGTTAAATTCCCTGAAATTGGAAGAGAATAACATACCGAGTCAAAATGCAGAATGTCACTCAACCTAG

Protein Analysis

407

Amino Acids

46.34

Weight (kDa)

8.4

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 118 - 324 1.1e-57 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 181 - 345 1.2e-31 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 2 cut(s) 469, 495
AccB7I CCANNNNNTGG 2 cut(s) 366, 834
AccII CGCG 1 cut(s) 552
AciI CCGC 2 cut(s) 387, 785
AclWI GGATC 1 cut(s) 1028
AcoI YGGCCR 2 cut(s) 300, 505
AcsI RAATTY 1 cut(s) 1162
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 834
AfaI GTAC 2 cut(s) 239, 496
AfiI CCNNNNNNNGG 6 cut(s) 361, 366, 517, 580, 834, 1174
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 4 cut(s) 38, 163, 751, 1154
AjnI CCWGG 3 cut(s) 108, 502, 678
AluBI AGCT 7 cut(s) 28, 47, 417, 671, 861, 1045, 1138
AluI AGCT 7 cut(s) 28, 47, 417, 671, 861, 1045, 1138
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 866
AlwI GGATC 1 cut(s) 1028
AoxI GGCC 9 cut(s) 65, 87, 216, 262, 300, 356, 384, 505, 912
ApeKI GCWGC 3 cut(s) 187, 539, 617
ApoI RAATTY 1 cut(s) 1162
AseI ATTAAT 1 cut(s) 999
AspS9I GGNCC 5 cut(s) 87, 112, 357, 384, 912
AsuC2I CCSGG 3 cut(s) 82, 347, 382
AsuHPI GGTGA 3 cut(s) 88, 181, 193
AsuNHI GCTAGC 1 cut(s) 667
AvaII GGWCC 1 cut(s) 112
BalI TGGCCA 2 cut(s) 302, 507
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 199, 526, 629
BccI CCATC 1 cut(s) 987
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 3 cut(s) 110, 504, 680
BciVI GTATCC 1 cut(s) 826
BclI TGATCA 3 cut(s) 478, 1063, 1141
BcnI CCSGG 3 cut(s) 82, 347, 382
BcoDI GTCTC 1 cut(s) 866
BfaI CTAG 4 cut(s) 44, 468, 668, 1222
BfmI CTRYAG 1 cut(s) 1007
BfrI CTTAAG 1 cut(s) 272
BfuAI ACCTGC 2 cut(s) 469, 495
BfuI GTATCC 1 cut(s) 826
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 5 cut(s) 188, 387, 540, 618, 786
BlsI GCNGC 5 cut(s) 189, 388, 541, 619, 787
Bme1390I CCNGG 6 cut(s) 82, 110, 347, 382, 504, 680
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 5 cut(s) 87, 112, 357, 384, 912
BmiI GGNNCC 4 cut(s) 10, 229, 385, 913
BmrFI CCNGG 6 cut(s) 82, 110, 347, 382, 504, 680
BmsI GCATC 4 cut(s) 81, 643, 654, 716
BmtI GCTAGC 1 cut(s) 671
BpuEI CTTGAG 2 cut(s) 82, 302
BpuMI CCSGG 3 cut(s) 82, 347, 382
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 7 cut(s) 345, 360, 381, 441, 502, 512, 776
Bsc4I CCNNNNNNNGG 6 cut(s) 361, 366, 517, 580, 834, 1174
Bse118I RCCGGY 1 cut(s) 1120
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 3 cut(s) 110, 504, 680
BseDI CCNNGG 7 cut(s) 345, 360, 381, 441, 502, 512, 776
BseGI GGATG 5 cut(s) 72, 589, 669, 731, 898
BseLI CCNNNNNNNGG 6 cut(s) 361, 366, 517, 580, 834, 1174
BseMI GCAATG 1 cut(s) 435
BseXI GCAGC 3 cut(s) 199, 526, 629
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 9 cut(s) 67, 89, 218, 264, 302, 358, 386, 507, 914
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 6 cut(s) 82, 347, 355, 381, 410, 1121
BslI CCNNNNNNNGG 6 cut(s) 361, 366, 517, 580, 834, 1174
BsmAI GTCTC 1 cut(s) 866
BsnI GGCC 9 cut(s) 67, 89, 218, 264, 302, 358, 386, 507, 914
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 4 cut(s) 478, 1033, 1063, 1141
Bsp19I CCATGG 1 cut(s) 512
BspACI CCGC 2 cut(s) 387, 785
BspANI GGCC 9 cut(s) 67, 89, 218, 264, 302, 358, 386, 507, 914
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 4 cut(s) 10, 229, 385, 913
BspMAI CTGCAG 1 cut(s) 1011
BspMI ACCTGC 2 cut(s) 469, 495
BspOI GCTAGC 1 cut(s) 671
BspPI GGATC 1 cut(s) 1028
BspQI GCTCTTC 1 cut(s) 549
BspTI CTTAAG 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 1120
BssAI RCCGGY 1 cut(s) 1120
BssECI CCNNGG 7 cut(s) 345, 360, 381, 441, 502, 512, 776
BssMI GATC 4 cut(s) 478, 1033, 1063, 1141
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 3 cut(s) 360, 512, 776
Bst2UI CCWGG 3 cut(s) 110, 504, 680
Bst4CI ACNGT 7 cut(s) 100, 130, 406, 624, 704, 1054, 1158
Bst6I CTCTTC 2 cut(s) 549, 1173
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 669, 863
BstDEI CTNAG 2 cut(s) 855, 881
BstDSI CCRYGG 2 cut(s) 441, 512
BstF5I GGATG 5 cut(s) 72, 589, 669, 731, 898
BstFNI CGCG 1 cut(s) 552
BstKTI GATC 4 cut(s) 481, 1036, 1066, 1144
BstMAI GTCTC 1 cut(s) 866
BstMBI GATC 4 cut(s) 478, 1033, 1063, 1141
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 3 cut(s) 110, 504, 680
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 6 cut(s) 80, 108, 345, 380, 502, 678
BstSFI CTRYAG 1 cut(s) 1007
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 3 cut(s) 199, 526, 629
BstXI CCANNNNNNTGG 2 cut(s) 442, 986
BsuI GTATCC 1 cut(s) 826
BsuRI GGCC 9 cut(s) 67, 89, 218, 264, 302, 358, 386, 507, 914
BtgI CCRYGG 2 cut(s) 441, 512
BtgZI GCGATG 1 cut(s) 1005
BtsCI GGATG 5 cut(s) 72, 589, 669, 731, 898
BtsI GCAGTG 1 cut(s) 1131
BtsIMutI CAGTG 2 cut(s) 620, 1131
BveI ACCTGC 2 cut(s) 469, 495
Cac8I GCNNGC 2 cut(s) 669, 863
CciI TCATGA 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 1120
Cfr13I GGNCC 5 cut(s) 87, 112, 357, 384, 912
Csp6I GTAC 2 cut(s) 238, 495
CviAII CATG 7 cut(s) 77, 482, 513, 536, 731, 929, 983
CviQI GTAC 2 cut(s) 238, 495
DdeI CTNAG 2 cut(s) 855, 881
DpnI GATC 4 cut(s) 480, 1035, 1065, 1143
DpnII GATC 4 cut(s) 478, 1033, 1063, 1141
DraIII CACNNNGTG 1 cut(s) 834
EaeI YGGCCR 2 cut(s) 300, 505
Eam1104I CTCTTC 2 cut(s) 549, 1173
EarI CTCTTC 2 cut(s) 549, 1173
Eco130I CCWWGG 3 cut(s) 360, 512, 776
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 852
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 108, 502, 678
EcoT14I CCWWGG 3 cut(s) 360, 512, 776
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 3 cut(s) 360, 512, 776
FaeI CATG 7 cut(s) 80, 485, 516, 539, 734, 932, 986
FatI CATG 7 cut(s) 76, 481, 512, 535, 730, 928, 982
FbaI TGATCA 3 cut(s) 478, 1063, 1141
Fnu4HI GCNGC 5 cut(s) 188, 387, 540, 618, 786
FokI GGATG 5 cut(s) 59, 596, 676, 738, 905
Fsp4HI GCNGC 5 cut(s) 188, 387, 540, 618, 786
FspBI CTAG 4 cut(s) 44, 468, 668, 1222
GluI GCNGC 5 cut(s) 188, 387, 540, 618, 786
HaeIII GGCC 9 cut(s) 67, 89, 218, 264, 302, 358, 386, 507, 914
HapII CCGG 6 cut(s) 82, 347, 355, 381, 410, 1121
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 7 cut(s) 80, 485, 516, 539, 734, 932, 986
HinfI GANTC 4 cut(s) 38, 340, 578, 1195
HpaII CCGG 6 cut(s) 82, 347, 355, 381, 410, 1121
HphI GGTGA 3 cut(s) 88, 181, 193
Hpy166II GTNNAC 4 cut(s) 126, 145, 402, 1080
Hpy188I TCNGA 5 cut(s) 259, 583, 871, 1068, 1146
Hpy188III TCNNGA 6 cut(s) 61, 319, 331, 482, 723, 1037
Hpy8I GTNNAC 4 cut(s) 126, 145, 402, 1080
Hpy99I CGWCG 2 cut(s) 152, 552
HpyCH4III ACNGT 7 cut(s) 100, 130, 406, 624, 704, 1054, 1158
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 244, 617, 656, 1009, 1205
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 855, 881
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 7 cut(s) 80, 485, 516, 539, 734, 932, 986
Ksp22I TGATCA 3 cut(s) 478, 1063, 1141
Kzo9I GATC 4 cut(s) 478, 1033, 1063, 1141
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 4 cut(s) 8, 227, 357, 1135
Lsp1109I GCAGC 3 cut(s) 199, 526, 629
LweI GCATC 4 cut(s) 81, 643, 654, 716
MaeI CTAG 4 cut(s) 44, 468, 668, 1222
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 3 cut(s) 454, 624, 1211
MalI GATC 4 cut(s) 480, 1035, 1065, 1143
MboI GATC 4 cut(s) 478, 1033, 1063, 1141
MboII GAAGA 4 cut(s) 406, 536, 662, 1190
MfeI CAATTG 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 354
MlsI TGGCCA 2 cut(s) 302, 507
MluCI AATT 6 cut(s) 232, 607, 715, 996, 1162, 1172
MluNI TGGCCA 2 cut(s) 302, 507
MlyI GAGTC 1 cut(s) 1204
MmeI TCCRAC 1 cut(s) 498
Mox20I TGGCCA 2 cut(s) 302, 507
Mph1103I ATGCAT 1 cut(s) 658
MscI TGGCCA 2 cut(s) 302, 507
MseI TTAA 5 cut(s) 273, 605, 948, 999, 1160
MslI CAYNNNNRTG 1 cut(s) 440
Msp20I TGGCCA 2 cut(s) 302, 507
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 6 cut(s) 82, 347, 355, 381, 410, 1121
MspR9I CCNGG 6 cut(s) 82, 110, 347, 382, 504, 680
MunI CAATTG 1 cut(s) 232
MvaI CCWGG 3 cut(s) 110, 504, 680
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 3 cut(s) 82, 347, 382
NcoI CCATGG 1 cut(s) 512
NdeII GATC 4 cut(s) 478, 1033, 1063, 1141
NheI GCTAGC 1 cut(s) 667
NlaIII CATG 7 cut(s) 80, 485, 516, 539, 734, 932, 986
NlaIV GGNNCC 4 cut(s) 10, 229, 385, 913
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 454, 1211
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 1 cut(s) 539
PagI TCATGA 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 549
PfeI GAWTC 3 cut(s) 38, 340, 578
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 2 cut(s) 366, 834
PfoI TCCNGGA 2 cut(s) 108, 678
PkrI GCNGC 5 cut(s) 189, 388, 541, 619, 787
PleI GAGTC 1 cut(s) 1203
PpsI GAGTC 1 cut(s) 1203
PpuMI RGGWCCY 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 108, 502, 678
PspGI CCWGG 3 cut(s) 108, 502, 678
PspN4I GGNNCC 4 cut(s) 10, 229, 385, 913
PspPI GGNCC 5 cut(s) 87, 112, 357, 384, 912
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 1011
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 2 cut(s) 239, 496
RsaNI GTAC 2 cut(s) 238, 495
RseI CAYNNNNRTG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 5 cut(s) 273, 605, 948, 999, 1160
SatI GCNGC 5 cut(s) 188, 387, 540, 618, 786
Sau3AI GATC 4 cut(s) 478, 1033, 1063, 1141
Sau96I GGNCC 5 cut(s) 87, 112, 357, 384, 912
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 6 cut(s) 82, 110, 347, 382, 504, 680
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 4 cut(s) 81, 643, 654, 716
SfcI CTRYAG 1 cut(s) 1007
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 3 cut(s) 61, 272, 317
SmoI CTYRAG 3 cut(s) 61, 272, 317
Sse9I AATT 6 cut(s) 232, 607, 715, 996, 1162, 1172
SsiI CCGC 2 cut(s) 387, 785
SspI AATATT 1 cut(s) 1003
SspMI CTAG 4 cut(s) 44, 468, 668, 1222
StyD4I CCNGG 6 cut(s) 80, 108, 345, 380, 502, 678
StyI CCWWGG 3 cut(s) 360, 512, 776
TaaI ACNGT 7 cut(s) 100, 130, 406, 624, 704, 1054, 1158
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 735
TasI AATT 6 cut(s) 232, 607, 715, 996, 1162, 1172
TauI GCSGC 2 cut(s) 389, 788
TfiI GAWTC 3 cut(s) 38, 340, 578
Tru1I TTAA 5 cut(s) 273, 605, 948, 999, 1160
Tru9I TTAA 5 cut(s) 273, 605, 948, 999, 1160
TscAI CASTG 2 cut(s) 627, 1131
TseFI GTSAC 2 cut(s) 454, 1211
TseI GCWGC 3 cut(s) 187, 539, 617
Tsp45I GTSAC 2 cut(s) 454, 1211
TspDTI ATGAA 4 cut(s) 653, 917, 968, 1145
TspGWI ACGGA 2 cut(s) 241, 563
TspRI CASTG 2 cut(s) 627, 1131
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 2 cut(s) 366, 834
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 1 cut(s) 1162
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 4 cut(s) 44, 468, 668, 1222
ZraI GACGTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.