Rh2CG508900

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
68119241 .. 68122218
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG508900.1

Sequence Viewer

Length: 1224 bp
ATGTATGGAGCCAGACACAAAAGAGAGCTGTCCTTTGAATCCCTAGCTCAAATCCCAATCTTGAGGCCGAGCATCCATGCCCGGAGGGCCAATCTCACCGTCAAGTTCCAGGACCTTTATGGGTTCACGGTGGAAGGGAATGTGGACGACGTCAATGTGTTGAACGAGGTGAGGGAGAAGGTGAGGCAGCAGGGGAGGGTTTGGTGGTCAATGGAGGCCAATAAAGGAGCCAATTGGTACTTGCACAAGTCCGTTTCAGAAGGCCAATCGCTTAAGGCTTCGCTAAAGTTTTCGGCTTTGGCCAATGCCATTACTCTCAAGAGGCTCATCAGGAAGGGGATTCCCCCGGTGCTCCGGCCCAAGGTCTGGTTTTCGCTTTCCGGGGCCGCCAAGAAGAAGTCCACCGTGCCGGACAGCTATTACAATGACTTGACCATTGCCGTGGAGGGCAAGGTCACACCTGCCACTAGGCAGATTGATCATGACCTGCCCCGTACCTTCCCTGGTCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTCGTCGCGTTCTTGTTGTGTATTCCTTCCGTGATTCGGATGTGGGTTATTGTCAGGGCTTAAATTATGTTGCAGCTCTGTTACTGCTTGTGATGAAGACAGAGGAAGATGCATTTTGGATGCTAGCTGTTCTCCTGGAAAATGTCTTGGTCAATGACTGTTATACAAATAATTTATCAGGATGCCATGTCGAACAAAGAGTTTTCAAGGATTTTCTTGCTAAAATGTGTCCAAGGGTAGCAGCGCATTTGGAAGCATTGGAGTTTGATGTATCCCTTGTTGCCACAGAGTGGTTTCTTTGCCTCTTTTCTAAGAGCTTGCCTTCAGAGACTACTCTAAGAGTATGGGATGTCCTTTTCTACGAAGGGGCGAAAGTTATGTTTCATGTGGCTTTGGCAATCTTTAAGATGAAGGAACAGGAGTTGCTTCTAACCCATCATGTTGGCGATGTAATTAATATTCTGCAGAAAACCACTCATCATCTATTTGATCCTGATGAGCTATTGACGGTAGCATTTGATCAGATAGGTTCGTTTACAACCAACACTATATCAAAGCAAAGGAAAAAACAAGAACCAGCAGTGATGAAGGAGCTTGATCAGAGAGTTAGACGGTTAAATTCCCTGAAATTGGAAGAGAATAACATACCAAGTCAAAATGCGGAATGTCACTCAACCTAG

Protein Analysis

407

Amino Acids

46.36

Weight (kDa)

8.59

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 118 - 324 1.1e-57 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 181 - 344 1.4e-31 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 2 cut(s) 469, 495
AccB7I CCANNNNNTGG 2 cut(s) 366, 834
AccII CGCG 1 cut(s) 552
AciI CCGC 2 cut(s) 387, 1205
AclWI GGATC 1 cut(s) 1028
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 1 cut(s) 1162
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 834
AfaI GTAC 2 cut(s) 239, 496
AfiI CCNNNNNNNGG 6 cut(s) 361, 366, 517, 580, 834, 1174
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 3 cut(s) 38, 163, 751
AjnI CCWGG 3 cut(s) 108, 502, 678
AluBI AGCT 8 cut(s) 28, 47, 417, 620, 671, 861, 1045, 1138
AluI AGCT 8 cut(s) 28, 47, 417, 620, 671, 861, 1045, 1138
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 866
AlwI GGATC 1 cut(s) 1028
AoxI GGCC 7 cut(s) 65, 87, 216, 262, 300, 356, 384
ApeKI GCWGC 4 cut(s) 187, 539, 617, 785
ApoI RAATTY 1 cut(s) 1162
AseI ATTAAT 1 cut(s) 999
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 4 cut(s) 87, 112, 357, 384
AsuC2I CCSGG 3 cut(s) 82, 347, 382
AsuHPI GGTGA 4 cut(s) 88, 181, 193, 500
AsuNHI GCTAGC 1 cut(s) 667
AvaII GGWCC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 302
BbsI GAAGAC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 4 cut(s) 199, 526, 629, 797
BccI CCATC 1 cut(s) 987
BceAI ACGGC 1 cut(s) 425
BciT130I CCWGG 3 cut(s) 110, 504, 680
BciVI GTATCC 1 cut(s) 826
BclI TGATCA 3 cut(s) 478, 1063, 1141
BcnI CCSGG 3 cut(s) 82, 347, 382
BcoDI GTCTC 1 cut(s) 866
BfaI CTAG 4 cut(s) 44, 468, 668, 1222
BfmI CTRYAG 1 cut(s) 1007
BfrI CTTAAG 1 cut(s) 272
BfuAI ACCTGC 2 cut(s) 469, 495
BfuI GTATCC 1 cut(s) 826
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 5 cut(s) 188, 387, 540, 618, 786
BlsI GCNGC 5 cut(s) 189, 388, 541, 619, 787
Bme1390I CCNGG 6 cut(s) 82, 110, 347, 382, 504, 680
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 4 cut(s) 87, 112, 357, 384
BmiI GGNNCC 3 cut(s) 10, 229, 385
BmrFI CCNGG 6 cut(s) 82, 110, 347, 382, 504, 680
BmsI GCATC 4 cut(s) 81, 643, 654, 716
BmtI GCTAGC 1 cut(s) 671
BpiI GAAGAC 1 cut(s) 647
BpuEI CTTGAG 2 cut(s) 82, 302
BpuMI CCSGG 3 cut(s) 82, 347, 382
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 7 cut(s) 345, 360, 381, 441, 502, 512, 776
Bsc4I CCNNNNNNNGG 6 cut(s) 361, 366, 517, 580, 834, 1174
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 3 cut(s) 110, 504, 680
BseDI CCNNGG 7 cut(s) 345, 360, 381, 441, 502, 512, 776
BseGI GGATG 5 cut(s) 72, 589, 669, 731, 898
BseLI CCNNNNNNNGG 6 cut(s) 361, 366, 517, 580, 834, 1174
BseMI GCAATG 1 cut(s) 435
BseXI GCAGC 4 cut(s) 199, 526, 629, 797
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 7 cut(s) 67, 89, 218, 264, 302, 358, 386
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 5 cut(s) 82, 347, 355, 381, 410
BslI CCNNNNNNNGG 6 cut(s) 361, 366, 517, 580, 834, 1174
BsmAI GTCTC 1 cut(s) 866
BsnI GGCC 7 cut(s) 67, 89, 218, 264, 302, 358, 386
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 4 cut(s) 478, 1033, 1063, 1141
Bsp19I CCATGG 1 cut(s) 512
BspACI CCGC 2 cut(s) 387, 1205
BspANI GGCC 7 cut(s) 67, 89, 218, 264, 302, 358, 386
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 3 cut(s) 10, 229, 385
BspMAI CTGCAG 1 cut(s) 1011
BspMI ACCTGC 2 cut(s) 469, 495
BspOI GCTAGC 1 cut(s) 671
BspPI GGATC 1 cut(s) 1028
BspQI GCTCTTC 1 cut(s) 549
BspTI CTTAAG 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 435
BssECI CCNNGG 7 cut(s) 345, 360, 381, 441, 502, 512, 776
BssMI GATC 4 cut(s) 478, 1033, 1063, 1141
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 3 cut(s) 360, 512, 776
Bst2UI CCWGG 3 cut(s) 110, 504, 680
Bst4CI ACNGT 6 cut(s) 100, 130, 406, 704, 1054, 1158
Bst6I CTCTTC 2 cut(s) 549, 1173
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 669, 863
BstDEI CTNAG 2 cut(s) 855, 881
BstDSI CCRYGG 2 cut(s) 441, 512
BstEII GGTNACC 1 cut(s) 506
BstF5I GGATG 5 cut(s) 72, 589, 669, 731, 898
BstFNI CGCG 1 cut(s) 552
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 4 cut(s) 481, 1036, 1066, 1144
BstMAI GTCTC 1 cut(s) 866
BstMBI GATC 4 cut(s) 478, 1033, 1063, 1141
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 3 cut(s) 110, 504, 680
BstNSI RCATGY 1 cut(s) 539
BstPI GGTNACC 1 cut(s) 506
BstSCI CCNGG 6 cut(s) 80, 108, 345, 380, 502, 678
BstSFI CTRYAG 1 cut(s) 1007
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 4 cut(s) 199, 526, 629, 797
BstV2I GAAGAC 1 cut(s) 647
BstXI CCANNNNNNTGG 2 cut(s) 442, 986
BsuI GTATCC 1 cut(s) 826
BsuRI GGCC 7 cut(s) 67, 89, 218, 264, 302, 358, 386
BtgI CCRYGG 2 cut(s) 441, 512
BtgZI GCGATG 1 cut(s) 1005
BtsCI GGATG 5 cut(s) 72, 589, 669, 731, 898
BtsI GCAGTG 1 cut(s) 1131
BtsIMutI CAGTG 1 cut(s) 1131
BveI ACCTGC 2 cut(s) 469, 495
Cac8I GCNNGC 2 cut(s) 669, 863
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 4 cut(s) 87, 112, 357, 384
Csp6I GTAC 2 cut(s) 238, 495
CviAII CATG 7 cut(s) 77, 482, 513, 536, 731, 929, 983
CviQI GTAC 2 cut(s) 238, 495
DdeI CTNAG 2 cut(s) 855, 881
DpnI GATC 4 cut(s) 480, 1035, 1065, 1143
DpnII GATC 4 cut(s) 478, 1033, 1063, 1141
DraIII CACNNNGTG 1 cut(s) 834
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 549, 1173
EarI CTCTTC 2 cut(s) 549, 1173
Eco130I CCWWGG 3 cut(s) 360, 512, 776
Eco47I GGWCC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 852
Eco91I GGTNACC 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 506
EcoRII CCWGG 3 cut(s) 108, 502, 678
EcoT14I CCWWGG 3 cut(s) 360, 512, 776
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 3 cut(s) 360, 512, 776
FaeI CATG 7 cut(s) 80, 485, 516, 539, 734, 932, 986
FatI CATG 7 cut(s) 76, 481, 512, 535, 730, 928, 982
FbaI TGATCA 3 cut(s) 478, 1063, 1141
Fnu4HI GCNGC 5 cut(s) 188, 387, 540, 618, 786
FokI GGATG 5 cut(s) 59, 596, 676, 738, 905
Fsp4HI GCNGC 5 cut(s) 188, 387, 540, 618, 786
FspBI CTAG 4 cut(s) 44, 468, 668, 1222
GlaI GCGC 1 cut(s) 789
GluI GCNGC 5 cut(s) 188, 387, 540, 618, 786
HaeIII GGCC 7 cut(s) 67, 89, 218, 264, 302, 358, 386
HapII CCGG 5 cut(s) 82, 347, 355, 381, 410
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 7 cut(s) 80, 485, 516, 539, 734, 932, 986
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HinfI GANTC 3 cut(s) 38, 340, 578
HpaII CCGG 5 cut(s) 82, 347, 355, 381, 410
HphI GGTGA 4 cut(s) 88, 181, 193, 500
Hpy166II GTNNAC 4 cut(s) 126, 145, 402, 1080
Hpy188I TCNGA 5 cut(s) 259, 583, 871, 1068, 1146
Hpy188III TCNNGA 6 cut(s) 61, 319, 331, 482, 723, 1037
Hpy8I GTNNAC 4 cut(s) 126, 145, 402, 1080
Hpy99I CGWCG 2 cut(s) 152, 552
HpyCH4III ACNGT 6 cut(s) 100, 130, 406, 704, 1054, 1158
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 244, 617, 656, 1009
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 855, 881
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 7 cut(s) 80, 485, 516, 539, 734, 932, 986
HspAI GCGC 1 cut(s) 788
Ksp22I TGATCA 3 cut(s) 478, 1063, 1141
Kzo9I GATC 4 cut(s) 478, 1033, 1063, 1141
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 4 cut(s) 8, 227, 357, 1135
Lsp1109I GCAGC 4 cut(s) 199, 526, 629, 797
LweI GCATC 4 cut(s) 81, 643, 654, 716
MaeI CTAG 4 cut(s) 44, 468, 668, 1222
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 454, 506, 624, 1211
MalI GATC 4 cut(s) 480, 1035, 1065, 1143
MboI GATC 4 cut(s) 478, 1033, 1063, 1141
MboII GAAGA 5 cut(s) 406, 536, 652, 662, 1190
MfeI CAATTG 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 6 cut(s) 232, 607, 715, 996, 1162, 1172
MluNI TGGCCA 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 498
Mox20I TGGCCA 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 658
MscI TGGCCA 1 cut(s) 302
MseI TTAA 5 cut(s) 273, 605, 948, 999, 1160
MslI CAYNNNNRTG 1 cut(s) 440
Msp20I TGGCCA 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 5 cut(s) 82, 347, 355, 381, 410
MspR9I CCNGG 6 cut(s) 82, 110, 347, 382, 504, 680
MunI CAATTG 1 cut(s) 232
MvaI CCWGG 3 cut(s) 110, 504, 680
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 3 cut(s) 82, 347, 382
NcoI CCATGG 1 cut(s) 512
NdeII GATC 4 cut(s) 478, 1033, 1063, 1141
NheI GCTAGC 1 cut(s) 667
NlaIII CATG 7 cut(s) 80, 485, 516, 539, 734, 932, 986
NlaIV GGNNCC 3 cut(s) 10, 229, 385
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 3 cut(s) 454, 506, 1211
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 1 cut(s) 539
PagI TCATGA 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 549
PfeI GAWTC 3 cut(s) 38, 340, 578
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 2 cut(s) 366, 834
PfoI TCCNGGA 2 cut(s) 108, 678
PkrI GCNGC 5 cut(s) 189, 388, 541, 619, 787
PpuMI RGGWCCY 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 3 cut(s) 108, 502, 678
PspEI GGTNACC 1 cut(s) 506
PspGI CCWGG 3 cut(s) 108, 502, 678
PspN4I GGNNCC 3 cut(s) 10, 229, 385
PspPI GGNCC 4 cut(s) 87, 112, 357, 384
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 1011
PsyI GACNNNGTC 1 cut(s) 149
RsaI GTAC 2 cut(s) 239, 496
RsaNI GTAC 2 cut(s) 238, 495
RseI CAYNNNNRTG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 5 cut(s) 273, 605, 948, 999, 1160
SatI GCNGC 5 cut(s) 188, 387, 540, 618, 786
Sau3AI GATC 4 cut(s) 478, 1033, 1063, 1141
Sau96I GGNCC 4 cut(s) 87, 112, 357, 384
ScrFI CCNGG 6 cut(s) 82, 110, 347, 382, 504, 680
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 4 cut(s) 81, 643, 654, 716
SfcI CTRYAG 1 cut(s) 1007
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 440
SmlI CTYRAG 3 cut(s) 61, 272, 317
SmoI CTYRAG 3 cut(s) 61, 272, 317
Sse9I AATT 6 cut(s) 232, 607, 715, 996, 1162, 1172
SsiI CCGC 2 cut(s) 387, 1205
SspI AATATT 1 cut(s) 1003
SspMI CTAG 4 cut(s) 44, 468, 668, 1222
StyD4I CCNGG 6 cut(s) 80, 108, 345, 380, 502, 678
StyI CCWWGG 3 cut(s) 360, 512, 776
TaaI ACNGT 6 cut(s) 100, 130, 406, 704, 1054, 1158
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 735
TasI AATT 6 cut(s) 232, 607, 715, 996, 1162, 1172
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 3 cut(s) 38, 340, 578
Tru1I TTAA 5 cut(s) 273, 605, 948, 999, 1160
Tru9I TTAA 5 cut(s) 273, 605, 948, 999, 1160
TscAI CASTG 1 cut(s) 1131
TseFI GTSAC 3 cut(s) 454, 506, 1211
TseI GCWGC 4 cut(s) 187, 539, 617, 785
Tsp45I GTSAC 3 cut(s) 454, 506, 1211
TspDTI ATGAA 4 cut(s) 653, 917, 968, 1145
TspGWI ACGGA 2 cut(s) 241, 563
TspRI CASTG 1 cut(s) 1131
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 2 cut(s) 366, 834
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 1 cut(s) 1162
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 4 cut(s) 44, 468, 668, 1222
ZraI GACGTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.