Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7889483 .. 7890449

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTTGCAGTCCTCTTGGAAAATGTGTTGGTTAATGACTGCTATACAAATAATTTATCAGGATGCCATGTTGAACAAAGAGTTTTCAAGGAGTTCCTGGATAAAAAGTGCCCGAGGATAGCGGCGCATTTGGAAGCAATGGAATTTGATGTCTCCCTTGTGGCCACCGAGTGGTTTCTATGCCTCTTTTCTAAGAGCTTGCCTTCTGAGACTACTCTAAGGGTATGGGATGTCCTTTTCTACGAGGGGGCTAAAGTTCTATTTCATGTCGCTTTGGCAATCTTTAAGATGAAGGAAGATGAGCTGCTTATAACCCATCATGTTGGTGATGTAATCAGTATTCTGCAGAAAACCACTCATCACCTATTTGATCCTGATGAGCTATTGACGGTGGCATTCGATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

5.24

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	171
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	74, 88
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	3 cut(s)	198, 304, 382
AluI	AGCT	3 cut(s)	198, 304, 382
Alw26I	GTCTC	2 cut(s)	157, 203
AlwI	GGATC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	338, 353
AvaI	CYCGRG	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	157, 203
BfmI	CTRYAG	1 cut(s)	344
BisI	GCNGC	2 cut(s)	123, 305
BlsI	GCNGC	2 cut(s)	124, 306
Bme1390I	CCNGG	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	2 cut(s)	68, 235
BseLI	CCNNNNNNNGG	1 cut(s)	171
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	291
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	157, 203
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	370, 400
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	403
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	370, 400
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	6, 200
BstDEI	CTNAG	3 cut(s)	192, 207, 218
BstF5I	GGATG	2 cut(s)	68, 235
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	2 cut(s)	373, 403
BstMAI	GTCTC	2 cut(s)	157, 203
BstMBI	GATC	2 cut(s)	370, 400
BstMCI	CGRYCG	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	344
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	164
BsuTUI	ATCGAT	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	68, 235
Cac8I	GCNNGC	2 cut(s)	6, 200
CfoI	GCGC	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	403
CviAII	CATG	3 cut(s)	68, 266, 320
CviJI	RGCY	5 cut(s)	164, 198, 251, 304, 382
CviKI_1	RGCY	5 cut(s)	164, 198, 251, 304, 382
DdeI	CTNAG	3 cut(s)	192, 207, 218
DpnI	GATC	2 cut(s)	372, 402
DpnII	GATC	2 cut(s)	370, 400
DraIII	CACNNNGTG	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	71, 269, 323
FaiI	YATR	7 cut(s)	45, 69, 181, 226, 267, 311, 321
FatI	CATG	3 cut(s)	67, 265, 319
Fnu4HI	GCNGC	2 cut(s)	123, 305
FokI	GGATG	2 cut(s)	75, 242
Fsp4HI	GCNGC	2 cut(s)	123, 305
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	2 cut(s)	123, 305
HaeIII	GGCC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	71, 269, 323
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HphI	GGTGA	2 cut(s)	338, 353
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	2 cut(s)	60, 374
HpyAV	CCTTC	2 cut(s)	213, 286
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	2 cut(s)	8, 346
HpyF3I	CTNAG	3 cut(s)	192, 207, 218
Hsp92II	CATG	3 cut(s)	71, 269, 323
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	370, 400
LpnPI	CCDG	4 cut(s)	45, 83, 110, 387
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	53
MalI	GATC	2 cut(s)	372, 402
MboI	GATC	2 cut(s)	370, 400
MboII	GAAGA	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	113
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	2 cut(s)	52, 143
MluNI	TGGCCA	1 cut(s)	164
MnlI	CCTC	4 cut(s)	23, 108, 194, 238
Mox20I	TGGCCA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	2 cut(s)	33, 285
MslI	CAYNNNNRTG	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	370, 400
NlaIII	CATG	3 cut(s)	71, 269, 323
PctI	GAATGC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	171
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	124, 306
Ple19I	CGATCG	1 cut(s)	403
PsiI	TTATAA	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	348
PvuI	CGATCG	1 cut(s)	403
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	33, 285
SatI	GCNGC	2 cut(s)	123, 305
Sau3AI	GATC	2 cut(s)	370, 400
ScrFI	CCNGG	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	113
SetI	ASST	4 cut(s)	200, 306, 366, 384
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	2 cut(s)	52, 143
SsiI	CCGC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	399, 403
TasI	AATT	2 cut(s)	52, 143
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	33, 285
Tru9I	TTAA	2 cut(s)	33, 285
TseI	GCWGC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	254, 305
Van91I	CCANNNNNTGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.