pycom09g04380

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
3222377 .. 3225287
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04380.6

Sequence Viewer

Length: 1185 bp
ATGTTTGGGACTCAGAGCAAGAGAGACCTGCCCCTGGAATTCCAATCCCAGATACCAATCTTGAGGCCCAGCATCCATGCCAGGAGGGCAAATCTGACTGTAAAATTCCAGGACCTTTATGGGTTTACAGTGGAAGGGAATGTGGACGATGTGAATGTGTTGAATGAGGTGAGAGAAAAGGTGAGGCAGCAGGGGAGGGAATGGTGGTCATTGGAGGCAAATAAAGGTGCAAATTGGTACTTGCAGACTTCTATTTCTGAAGGGAATTTGAAATCCTCCTTAAAGTTTTCAGCTTTGGGAAATTCCATCACTCTGAAGCGGCTGATTAGGAAGGGGATTCCGCCGGTGCTCCGCCCCAAGGTGTGGTTTTCGCTGTCCGGGGCCGCCAAGAAGAAGTCCACCGTGCCGGAGAGCTATTACGATGACTTGATCAAGGCCACTGAGGGCAAGGTCACCCCTGCCACCAGGCAGATTGATCATGACCTCCCCCGGACCTTCCCTGGTCATCCATGGTTGGACACCCCAGAGGGTCACGCTGCTCTCCGACGTGTACTTGTTGGATATTCCTTCCGTGATTCTGATGTTGGATACTGTCAGGGCTTAAATTATGTTGCAGCATTGTTACTGCTTGTGATGAAAACGGAAGAAGATGCATTTTGGATGCTTGCAGTCCTCTTGGAAAATGTGTTAGTTAATGACTGCTATACAAATAATTTATCAGGATGCCATGTTGAACAAAGAGTTGTCAAGGAGTTCCTGGATAAAAAGTGCCCGAGGATAGCAACGCATTTGGAAGCAATGGAGTTTGATGTCTCCCTTGTGGCCACTGAGTGGTTTCTATGCCTCTTTTCCAAGAGCTTGCCTTCTGAGACTACTCTAAGGGTATGGGATGTCCTTTTCTATGAGGGGGCTAAAGTTCTATTTCACGTTGCTTTAGCAATCTTTAAGATGAAGGAAGATCAGCTGCTTATAACCCATCATGTTGGAGATGTAATCAGTATTCTGCAGAGAACCACCCATCACCTATTTGATCCTGATGAACTATTGACGGTGGCATTTGATAAGATAGGTTCAATGACAACCAACACGATATCAAAGCAAAGGAAAAAGCAAGAACCAGCGGTGATGAAAGAGCTCGATCAGAGAATAAGACGGCTAAATTCCCTAAAACTGGACGAGAAATAG

Protein Analysis

395

Amino Acids

45.02

Weight (kDa)

8.63

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 971
Acc36I ACCTGC 1 cut(s) 36
AccB7I CCANNNNNTGG 2 cut(s) 363, 831
AciI CCGC 5 cut(s) 319, 341, 352, 384, 1121
AclWI GGATC 1 cut(s) 1025
AcoI YGGCCR 1 cut(s) 822
AcsI RAATTY 5 cut(s) 38, 104, 265, 301, 1159
AcuI CTGAAG 2 cut(s) 279, 335
AdeI CACNNNGTG 1 cut(s) 831
AfaI GTAC 2 cut(s) 239, 552
AfiI CCNNNNNNNGG 5 cut(s) 34, 358, 363, 831, 1171
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 4 cut(s) 163, 271, 734, 1074
AjiI CACGTC 1 cut(s) 548
AjnI CCWGG 6 cut(s) 33, 80, 108, 464, 499, 756
AluBI AGCT 5 cut(s) 293, 414, 858, 964, 1135
AluI AGCT 5 cut(s) 293, 414, 858, 964, 1135
Alw21I GWGCWC 2 cut(s) 351, 1137
Alw26I GTCTC 3 cut(s) 18, 817, 863
AlwI GGATC 1 cut(s) 1025
Ama87I CYCGRG 1 cut(s) 772
AoxI GGCC 4 cut(s) 65, 381, 435, 822
ApeKI GCWGC 4 cut(s) 187, 536, 614, 964
ApoI RAATTY 5 cut(s) 38, 104, 265, 301, 1159
AspS9I GGNCC 4 cut(s) 66, 112, 381, 492
AsuC2I CCSGG 2 cut(s) 379, 490
AsuHPI GGTGA 5 cut(s) 181, 193, 445, 1013, 1135
AvaI CYCGRG 1 cut(s) 772
AvaII GGWCC 2 cut(s) 112, 492
BaeGI GKGCMC 1 cut(s) 773
BalI TGGCCA 1 cut(s) 824
BanII GRGCYC 1 cut(s) 1137
Bbv12I GWGCWC 2 cut(s) 351, 1137
BbvI GCAGC 4 cut(s) 199, 523, 626, 951
BccI CCATC 3 cut(s) 314, 984, 1026
BceAI ACGGC 1 cut(s) 1169
BciT130I CCWGG 6 cut(s) 35, 82, 110, 466, 501, 758
BciVI GTATCC 1 cut(s) 581
BclI TGATCA 2 cut(s) 429, 475
BcnI CCSGG 2 cut(s) 379, 490
BcoDI GTCTC 3 cut(s) 18, 817, 863
BfmI CTRYAG 1 cut(s) 1004
BfuAI ACCTGC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 581
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 6 cut(s) 188, 320, 384, 537, 615, 965
BlsI GCNGC 6 cut(s) 189, 321, 385, 538, 616, 966
Bme1390I CCNGG 8 cut(s) 35, 82, 110, 379, 466, 490, 501, 758
Bme18I GGWCC 2 cut(s) 112, 492
BmeT110I CYCGRG 1 cut(s) 772
BmgBI CACGTC 1 cut(s) 548
BmgT120I GGNCC 4 cut(s) 66, 112, 381, 492
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 8 cut(s) 35, 82, 110, 379, 466, 490, 501, 758
BmsI GCATC 4 cut(s) 81, 640, 651, 713
BpuEI CTTGAG 1 cut(s) 82
BpuMI CCSGG 2 cut(s) 379, 490
BsaBI GATNNNNATC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 7 cut(s) 33, 357, 378, 488, 499, 509, 773
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 358, 363, 831, 1171
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 1176
Bse3DI GCAATG 1 cut(s) 804
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 6 cut(s) 35, 82, 110, 466, 501, 758
BseDI CCNNGG 7 cut(s) 33, 357, 378, 488, 499, 509, 773
BseGI GGATG 5 cut(s) 72, 505, 666, 728, 895
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 5 cut(s) 34, 358, 363, 831, 1171
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 4 cut(s) 26, 432, 819, 858
BseNI ACTGG 1 cut(s) 1176
BseSI GKGCMC 1 cut(s) 773
BseXI GCAGC 4 cut(s) 199, 523, 626, 951
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 4 cut(s) 67, 383, 437, 824
BsiHKAI GWGCWC 2 cut(s) 351, 1137
BsiHKCI CYCGRG 1 cut(s) 772
BsiSI CCGG 4 cut(s) 344, 378, 407, 490
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 5 cut(s) 34, 358, 363, 831, 1171
BsmAI GTCTC 3 cut(s) 18, 817, 863
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 4 cut(s) 67, 383, 437, 824
Bso31I GGTCTC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 772
Bsp1286I GDGCHC 3 cut(s) 351, 773, 1137
Bsp143I GATC 5 cut(s) 429, 475, 958, 1030, 1138
Bsp19I CCATGG 1 cut(s) 509
BspACI CCGC 5 cut(s) 319, 341, 352, 384, 1121
BspANI GGCC 4 cut(s) 67, 383, 437, 824
BspCNI CTCAG 4 cut(s) 25, 433, 820, 859
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 382
BspMAI CTGCAG 1 cut(s) 1008
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 1025
BspTNI GGTCTC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 804
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 1 cut(s) 1176
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 7 cut(s) 33, 357, 378, 488, 499, 509, 773
BssMI GATC 5 cut(s) 429, 475, 958, 1030, 1138
BssT1I CCWWGG 2 cut(s) 357, 509
Bst2UI CCWGG 6 cut(s) 35, 82, 110, 466, 501, 758
Bst4CI ACNGT 5 cut(s) 100, 130, 403, 593, 1051
BstC8I GCNNGC 2 cut(s) 666, 860
BstDEI CTNAG 5 cut(s) 12, 441, 828, 867, 878
BstDSI CCRYGG 1 cut(s) 509
BstEII GGTNACC 1 cut(s) 451
BstF5I GGATG 5 cut(s) 72, 505, 666, 728, 895
BstKTI GATC 5 cut(s) 432, 478, 961, 1033, 1141
BstMAI GTCTC 3 cut(s) 18, 817, 863
BstMBI GATC 5 cut(s) 429, 475, 958, 1030, 1138
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 6 cut(s) 35, 82, 110, 466, 501, 758
BstPI GGTNACC 1 cut(s) 451
BstSCI CCNGG 8 cut(s) 33, 80, 108, 377, 464, 488, 499, 756
BstSFI CTRYAG 1 cut(s) 1004
BstSLI GKGCMC 1 cut(s) 773
BstV1I GCAGC 4 cut(s) 199, 523, 626, 951
BstXI CCANNNNNNTGG 1 cut(s) 983
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 4 cut(s) 67, 383, 437, 824
BtgI CCRYGG 1 cut(s) 509
BtrI CACGTC 1 cut(s) 548
BtsCI GGATG 5 cut(s) 72, 505, 666, 728, 895
BtsIMutI CAGTG 3 cut(s) 135, 438, 825
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 666, 860
CciI TCATGA 1 cut(s) 478
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 4 cut(s) 66, 112, 381, 492
Csp6I GTAC 2 cut(s) 238, 551
CviAII CATG 5 cut(s) 77, 479, 510, 728, 980
CviQI GTAC 2 cut(s) 238, 551
DdeI CTNAG 5 cut(s) 12, 441, 828, 867, 878
DpnI GATC 5 cut(s) 431, 477, 960, 1032, 1140
DpnII GATC 5 cut(s) 429, 475, 958, 1030, 1138
DraIII CACNNNGTG 1 cut(s) 831
EaeI YGGCCR 1 cut(s) 822
EciI GGCGGA 2 cut(s) 330, 341
Ecl136II GAGCTC 1 cut(s) 1135
Eco130I CCWWGG 2 cut(s) 357, 509
Eco24I GRGCYC 1 cut(s) 1137
Eco31I GGTCTC 1 cut(s) 18
Eco32I GATATC 1 cut(s) 1092
Eco47I GGWCC 2 cut(s) 112, 492
Eco53kI GAGCTC 1 cut(s) 1135
Eco57I CTGAAG 2 cut(s) 279, 335
Eco88I CYCGRG 1 cut(s) 772
Eco91I GGTNACC 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 1135
EcoO109I RGGNCCY 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 38
EcoRII CCWGG 6 cut(s) 33, 80, 108, 464, 499, 756
EcoRV GATATC 1 cut(s) 1092
EcoT14I CCWWGG 2 cut(s) 357, 509
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 1137
ErhI CCWWGG 2 cut(s) 357, 509
FaeI CATG 5 cut(s) 80, 482, 513, 731, 983
FaqI GGGAC 1 cut(s) 22
FatI CATG 5 cut(s) 76, 478, 509, 727, 979
FbaI TGATCA 2 cut(s) 429, 475
Fnu4HI GCNGC 6 cut(s) 188, 320, 384, 537, 615, 965
FokI GGATG 5 cut(s) 59, 492, 673, 735, 902
FriOI GRGCYC 1 cut(s) 1137
Fsp4HI GCNGC 6 cut(s) 188, 320, 384, 537, 615, 965
GluI GCNGC 6 cut(s) 188, 320, 384, 537, 615, 965
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 4 cut(s) 67, 383, 437, 824
HapII CCGG 4 cut(s) 344, 378, 407, 490
Hin1II CATG 5 cut(s) 80, 482, 513, 731, 983
HinfI GANTC 3 cut(s) 10, 337, 575
HpaII CCGG 4 cut(s) 344, 378, 407, 490
HphI GGTGA 5 cut(s) 181, 193, 445, 1013, 1135
Hpy166II GTNNAC 4 cut(s) 126, 145, 399, 551
Hpy188I TCNGA 8 cut(s) 15, 96, 259, 315, 545, 580, 868, 1143
Hpy188III TCNNGA 4 cut(s) 61, 479, 720, 1034
Hpy8I GTNNAC 4 cut(s) 126, 145, 399, 551
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 7 cut(s) 128, 254, 325, 505, 577, 873, 946
HpyCH4III ACNGT 5 cut(s) 100, 130, 403, 593, 1051
HpyCH4IV ACGT 2 cut(s) 547, 927
HpyCH4V TGCA 6 cut(s) 230, 244, 614, 653, 668, 1006
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 5 cut(s) 12, 441, 828, 867, 878
HpySE526I ACGT 2 cut(s) 547, 927
Hsp92II CATG 5 cut(s) 80, 482, 513, 731, 983
Ksp22I TGATCA 2 cut(s) 429, 475
Kzo9I GATC 5 cut(s) 429, 475, 958, 1030, 1138
LmnI GCTCC 1 cut(s) 354
Lsp1109I GCAGC 4 cut(s) 199, 523, 626, 951
LweI GCATC 4 cut(s) 81, 640, 651, 713
MaeII ACGT 2 cut(s) 547, 927
MaeIII GTNAC 3 cut(s) 451, 530, 621
MalI GATC 5 cut(s) 431, 477, 960, 1032, 1140
MboI GATC 5 cut(s) 429, 475, 958, 1030, 1138
MboII GAAGA 4 cut(s) 403, 656, 659, 968
MhlI GDGCHC 3 cut(s) 351, 773, 1137
MlsI TGGCCA 1 cut(s) 824
MluCI AATT 8 cut(s) 38, 104, 232, 265, 301, 604, 712, 1159
MluNI TGGCCA 1 cut(s) 824
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 5 cut(s) 495, 538, 565, 568, 964
Mox20I TGGCCA 1 cut(s) 824
Mph1103I ATGCAT 1 cut(s) 655
MscI TGGCCA 1 cut(s) 824
MseI TTAA 4 cut(s) 281, 602, 693, 945
Msp20I TGGCCA 1 cut(s) 824
MspA1I CMGCKG 2 cut(s) 964, 1121
MspI CCGG 4 cut(s) 344, 378, 407, 490
MspR9I CCNGG 8 cut(s) 35, 82, 110, 379, 466, 490, 501, 758
MvaI CCWGG 6 cut(s) 35, 82, 110, 466, 501, 758
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 2 cut(s) 379, 490
NcoI CCATGG 1 cut(s) 509
NdeII GATC 5 cut(s) 429, 475, 958, 1030, 1138
NlaIII CATG 5 cut(s) 80, 482, 513, 731, 983
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 451, 530
NsiI ATGCAT 1 cut(s) 655
PagI TCATGA 1 cut(s) 478
PfeI GAWTC 2 cut(s) 337, 575
PflMI CCANNNNNTGG 2 cut(s) 363, 831
PfoI TCCNGGA 2 cut(s) 108, 756
PkrI GCNGC 6 cut(s) 189, 321, 385, 538, 616, 966
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PpuMI RGGWCCY 1 cut(s) 112
PsiI TTATAA 1 cut(s) 971
Psp124BI GAGCTC 1 cut(s) 1137
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 6 cut(s) 33, 80, 108, 464, 499, 756
PspEI GGTNACC 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 6 cut(s) 33, 80, 108, 464, 499, 756
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 4 cut(s) 66, 112, 381, 492
PspPPI RGGWCCY 1 cut(s) 112
PstI CTGCAG 1 cut(s) 1008
PvuII CAGCTG 1 cut(s) 964
RsaI GTAC 2 cut(s) 239, 552
RsaNI GTAC 2 cut(s) 238, 551
SacI GAGCTC 1 cut(s) 1137
SaqAI TTAA 4 cut(s) 281, 602, 693, 945
SatI GCNGC 6 cut(s) 188, 320, 384, 537, 615, 965
Sau3AI GATC 5 cut(s) 429, 475, 958, 1030, 1138
Sau96I GGNCC 4 cut(s) 66, 112, 381, 492
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 8 cut(s) 35, 82, 110, 379, 466, 490, 501, 758
SduI GDGCHC 3 cut(s) 351, 773, 1137
SfaNI GCATC 4 cut(s) 81, 640, 651, 713
SfcI CTRYAG 1 cut(s) 1004
SgrAI CRCCGGYG 1 cut(s) 343
SinI GGWCC 2 cut(s) 112, 492
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 8 cut(s) 38, 104, 232, 265, 301, 604, 712, 1159
SsiI CCGC 5 cut(s) 319, 341, 352, 384, 1121
SstI GAGCTC 1 cut(s) 1137
StyD4I CCNGG 8 cut(s) 33, 80, 108, 377, 464, 488, 499, 756
StyI CCWWGG 2 cut(s) 357, 509
TaaI ACNGT 5 cut(s) 100, 130, 403, 593, 1051
TaiI ACGT 2 cut(s) 550, 930
TaqI TCGA 1 cut(s) 1137
TasI AATT 8 cut(s) 38, 104, 232, 265, 301, 604, 712, 1159
TatI WGTACW 1 cut(s) 550
TauI GCSGC 2 cut(s) 322, 386
TfiI GAWTC 2 cut(s) 337, 575
Tru1I TTAA 4 cut(s) 281, 602, 693, 945
Tru9I TTAA 4 cut(s) 281, 602, 693, 945
TscAI CASTG 3 cut(s) 135, 445, 832
TseFI GTSAC 2 cut(s) 451, 530
TseI GCWGC 4 cut(s) 187, 536, 614, 964
Tsp45I GTSAC 2 cut(s) 451, 530
TspDTI ATGAA 4 cut(s) 650, 965, 1053, 1142
TspGWI ACGGA 2 cut(s) 560, 656
TspRI CASTG 3 cut(s) 135, 445, 832
Van91I CCANNNNNTGG 2 cut(s) 363, 831
VpaK11BI GGWCC 2 cut(s) 112, 492
XapI RAATTY 5 cut(s) 38, 104, 265, 301, 1159
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.