Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7786206 .. 7791516

Gene Structure 5311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTCTATGCACAAAAAGACCTGCCCCGTACCTTCCCTGGTCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTCGTCGCGTTCTTGTTGTGTATTCGTTCCGTGATTCGGATGTGGGTTATTGTCAGGGCTTAAATTATGTTGCAGCACTGTTACTGCTTGTGATGAAAACAGAGGAAGATGCATTTTGGATGCTAGCTGTTCTCCTGGAAAATGTCTTGGTCAATGACTGTTATACAAATAATTTATCAGGATGCCATGTCGAACAAAGAGTTTTCAAGGATTTTCTTGCTAAAATGTGTCCAAGGGTAGCGGCGCATTTGGAAGCATTGGAGTTTGATGTATCCCTTGTTGCCACAGAGTGGTTTCTTTGCCTCTTTTCTAAGAGCTTGCCTTCAGAGTGCGAGCCATTCGAGCATGGGCTGCTCTCCATCCCCAAGCTCATCTTTGCTGACCCCATGCAAACCATAATTCCTCTTAAGCAGAAGCTAATCGAGCAATCGTCGAGTCGCCGGGTCGACTCCACAACGATCTCCGAGTCGTTGCAGATCTCCATTGATCTCGCGCCTAGCCTCGGTTCATCATTTGACCGAGTCGACCCGGAAGCAGACTCGCCCGCCGCTCAACACCACTTGCGTGCCTCCGCATCTCTGTTACTCCGGCAGCAGCGGTTACAGCTCTTATGGAGCGATCCGGGTCGTGGCGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

239

Amino Acids

26.78

Weight (kDa)

5.34

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	5 - 136	4.7e-39	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	26 - 169	1.2e-21	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccBSI	CCGCTC	1 cut(s)	629
AccI	GTMKAC	2 cut(s)	525, 603
AccII	CGCG	2 cut(s)	87, 572
AciI	CCGC	6 cut(s)	320, 624, 627, 651, 676, 711
AclWI	GGATC	1 cut(s)	692
AcuI	CTGAAG	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	5 cut(s)	52, 115, 369, 581, 707
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	37, 213
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	5 cut(s)	206, 396, 448, 496, 685
AluI	AGCT	5 cut(s)	206, 396, 448, 496, 685
AlwI	GGATC	1 cut(s)	692
ApeKI	GCWGC	5 cut(s)	74, 152, 430, 670, 673
AspLEI	GCGC	2 cut(s)	325, 574
AsuC2I	CCSGG	3 cut(s)	521, 608, 702
AsuHPI	GGTGA	1 cut(s)	35
AsuNHI	GCTAGC	1 cut(s)	202
BbvI	GCAGC	5 cut(s)	61, 164, 417, 682, 685
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	2 cut(s)	39, 215
BciVI	GTATCC	1 cut(s)	361
BcnI	CCSGG	3 cut(s)	521, 608, 702
BfaI	CTAG	2 cut(s)	203, 576
BfrI	CTTAAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	361
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	7 cut(s)	75, 153, 321, 431, 627, 671, 674
BlsI	GCNGC	7 cut(s)	76, 154, 322, 432, 628, 672, 675
Bme1390I	CCNGG	5 cut(s)	39, 215, 521, 608, 702
BmrFI	CCNGG	5 cut(s)	39, 215, 521, 608, 702
BmsI	GCATC	4 cut(s)	178, 189, 251, 662
BmtI	GCTAGC	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	521, 608, 702
BsaJI	CCNNGG	4 cut(s)	37, 47, 311, 580
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 115, 369, 581, 707
BseBI	CCWGG	2 cut(s)	39, 215
BseDI	CCNNGG	4 cut(s)	37, 47, 311, 580
BseGI	GGATG	4 cut(s)	124, 204, 266, 438
BseLI	CCNNNNNNNGG	5 cut(s)	52, 115, 369, 581, 707
BseXI	GCAGC	5 cut(s)	61, 164, 417, 682, 685
Bsh1236I	CGCG	2 cut(s)	87, 572
BsiSI	CCGG	4 cut(s)	520, 608, 667, 701
BslI	CCNNNNNNNGG	5 cut(s)	52, 115, 369, 581, 707
Bsp143I	GATC	4 cut(s)	537, 555, 565, 697
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	6 cut(s)	320, 624, 627, 651, 676, 711
BspFNI	CGCG	2 cut(s)	87, 572
BspMI	ACCTGC	1 cut(s)	30
BspOI	GCTAGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	692
BspQI	GCTCTTC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	485
BsrBI	CCGCTC	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	37, 47, 311, 580
BssMI	GATC	4 cut(s)	537, 555, 565, 697
BssT1I	CCWWGG	2 cut(s)	47, 311
Bst2UI	CCWGG	2 cut(s)	39, 215
Bst4CI	ACNGT	2 cut(s)	159, 239
Bst6I	CTCTTC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	5 cut(s)	204, 398, 413, 624, 645
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	4 cut(s)	124, 204, 266, 438
BstFNI	CGCG	2 cut(s)	87, 572
BstHHI	GCGC	2 cut(s)	325, 574
BstKTI	GATC	4 cut(s)	540, 558, 568, 700
BstMBI	GATC	4 cut(s)	537, 555, 565, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	421, 430, 502, 682
BstNI	CCWGG	2 cut(s)	39, 215
BstNSI	RCATGY	1 cut(s)	74
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	5 cut(s)	37, 213, 519, 606, 700
BstUI	CGCG	2 cut(s)	87, 572
BstV1I	GCAGC	5 cut(s)	61, 164, 417, 682, 685
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	124, 204, 266, 438
BtsIMutI	CAGTG	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	5 cut(s)	204, 398, 413, 624, 645
CfoI	GCGC	2 cut(s)	325, 574
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	5 cut(s)	48, 71, 266, 425, 466
CviJI	RGCY	9 cut(s)	138, 206, 396, 415, 430, 448, 496, 579, 685
CviKI_1	RGCY	9 cut(s)	138, 206, 396, 415, 430, 448, 496, 579, 685
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	4 cut(s)	539, 557, 567, 699
DpnII	GATC	4 cut(s)	537, 555, 565, 697
DraIII	CACNNNGTG	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	47, 311
Eco57I	CTGAAG	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	37, 213
EcoT14I	CCWWGG	2 cut(s)	47, 311
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	47, 311
FaeI	CATG	5 cut(s)	51, 74, 269, 428, 469
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FatI	CATG	5 cut(s)	47, 70, 265, 424, 465
FauI	CCCGC	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	525, 603
Fnu4HI	GCNGC	7 cut(s)	75, 153, 321, 431, 627, 671, 674
FokI	GGATG	4 cut(s)	131, 211, 273, 425
Fsp4HI	GCNGC	7 cut(s)	75, 153, 321, 431, 627, 671, 674
FspBI	CTAG	2 cut(s)	203, 576
GlaI	GCGC	2 cut(s)	324, 573
GluI	GCNGC	7 cut(s)	75, 153, 321, 431, 627, 671, 674
HapII	CCGG	4 cut(s)	520, 608, 667, 701
HhaI	GCGC	2 cut(s)	325, 574
Hin1II	CATG	5 cut(s)	51, 74, 269, 428, 469
Hin6I	GCGC	2 cut(s)	323, 572
HinP1I	GCGC	2 cut(s)	323, 572
HincII	GTYRAC	2 cut(s)	526, 604
HindII	GTYRAC	2 cut(s)	526, 604
HinfI	GANTC	6 cut(s)	113, 514, 527, 545, 600, 617
HpaII	CCGG	4 cut(s)	520, 608, 667, 701
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	526, 604
Hpy188I	TCNGA	3 cut(s)	118, 406, 544
Hpy188III	TCNNGA	1 cut(s)	258
Hpy8I	GTNNAC	2 cut(s)	526, 604
Hpy99I	CGWCG	2 cut(s)	87, 514
HpyAV	CCTTC	3 cut(s)	43, 59, 411
HpyCH4III	ACNGT	2 cut(s)	159, 239
HpyCH4V	TGCA	5 cut(s)	11, 152, 191, 469, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	421, 430, 502, 682
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	5 cut(s)	51, 74, 269, 428, 469
HspAI	GCGC	2 cut(s)	323, 572
Kzo9I	GATC	4 cut(s)	537, 555, 565, 697
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	693
Lsp1109I	GCAGC	5 cut(s)	61, 164, 417, 682, 685
LweI	GCATC	4 cut(s)	178, 189, 251, 662
MaeI	CTAG	2 cut(s)	203, 576
MaeIII	GTNAC	4 cut(s)	41, 159, 660, 678
MalI	GATC	4 cut(s)	539, 557, 567, 699
MbiI	CCGCTC	1 cut(s)	629
MboI	GATC	4 cut(s)	537, 555, 565, 697
MboII	GAAGA	2 cut(s)	71, 197
MflI	RGATCY	1 cut(s)	555
MluCI	AATT	3 cut(s)	142, 250, 477
MlyI	GAGTC	5 cut(s)	521, 523, 554, 609, 611
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	175, 392, 492, 590, 658, 707
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	140, 486
MslI	CAYNNNNRTG	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	676
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	4 cut(s)	520, 608, 667, 701
MspR9I	CCNGG	5 cut(s)	39, 215, 521, 608, 702
MvaI	CCWGG	2 cut(s)	39, 215
MvnI	CGCG	2 cut(s)	87, 572
MwoI	GCNNNNNNNGC	4 cut(s)	421, 430, 502, 682
NciI	CCSGG	3 cut(s)	521, 608, 702
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	537, 555, 565, 697
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	5 cut(s)	51, 74, 269, 428, 469
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	7 cut(s)	76, 154, 322, 432, 628, 672, 675
PleI	GAGTC	5 cut(s)	521, 522, 553, 608, 611
PpsI	GAGTC	5 cut(s)	521, 522, 553, 608, 611
Psp6I	CCWGG	2 cut(s)	37, 213
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	37, 213
PsuI	RGATCY	1 cut(s)	555
PsyI	GACNNNGTC	1 cut(s)	599
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	642
SalI	GTCGAC	2 cut(s)	524, 602
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	140, 486
SatI	GCNGC	7 cut(s)	75, 153, 321, 431, 627, 671, 674
Sau3AI	GATC	4 cut(s)	537, 555, 565, 697
SchI	GAGTC	5 cut(s)	521, 523, 554, 609, 611
ScrFI	CCNGG	5 cut(s)	39, 215, 521, 608, 702
SetI	ASST	7 cut(s)	24, 35, 208, 398, 450, 498, 687
SfaNI	GCATC	4 cut(s)	178, 189, 251, 662
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	3 cut(s)	142, 250, 477
SsiI	CCGC	6 cut(s)	320, 624, 627, 651, 676, 711
SspMI	CTAG	2 cut(s)	203, 576
StyD4I	CCNGG	5 cut(s)	37, 213, 519, 606, 700
StyI	CCWWGG	2 cut(s)	47, 311
TaaI	ACNGT	2 cut(s)	159, 239
TaqI	TCGA	6 cut(s)	270, 420, 501, 512, 525, 603
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	3 cut(s)	142, 250, 477
TauI	GCSGC	2 cut(s)	323, 629
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	140, 486
Tru9I	TTAA	2 cut(s)	140, 486
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	5 cut(s)	74, 152, 430, 670, 673
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	188, 576
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	162
Tth111I	GACNNNGTC	1 cut(s)	599
Van91I	CCANNNNNTGG	1 cut(s)	369
Vha464I	CTTAAG	1 cut(s)	485
XceI	RCATGY	1 cut(s)	74
XmiI	GTMKAC	2 cut(s)	525, 603
XspI	CTAG	2 cut(s)	203, 576
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.