Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7746533 .. 7747712

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG092200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCTGTAGCATTTTGTTGTGTGGACCTGCCCCGTACCTTCCTTGGTCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTTGTCGCGTTCTTGTTGTGTATTCGTTCCGTGATTCGGATGTGGGTTATTGTCAGGGCTTAAATTATGTTGCAGCACTGTTACTGCTTGTGATGAAAACAGAGGAAGATGCATTTTGGATGCTAGCTGTTCTCCTGGAAAATGTCTTGGTCAATAACTGTTATTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

85

Amino Acids

9.62

Weight (kDa)

4.78

Isoelectric Point (pI)

23.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	9 - 83	4.2e-20	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	28 - 83	4.1e-09	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	36
AccII	CGCG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	58, 121
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	80, 158
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	41
AsuNHI	GCTAGC	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	25
BbvI	GCAGC	2 cut(s)	67, 170
BciT130I	CCWGG	1 cut(s)	221
BfaI	CTAG	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	36
BisI	GCNGC	2 cut(s)	81, 159
BlsI	GCNGC	2 cut(s)	82, 160
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	184, 195
BmtI	GCTAGC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	43, 53
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 121
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	43, 53
BseGI	GGATG	2 cut(s)	130, 210
BseLI	CCNNNNNNNGG	2 cut(s)	58, 121
BseXI	GCAGC	2 cut(s)	67, 170
Bsh1236I	CGCG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	58, 121
Bsp19I	CCATGG	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	93
BspMI	ACCTGC	1 cut(s)	36
BspOI	GCTAGC	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	43, 53
BssT1I	CCWWGG	2 cut(s)	43, 53
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	165, 245
BstC8I	GCNNGC	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	130, 210
BstFNI	CGCG	1 cut(s)	93
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	67, 170
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	130, 210
BtsIMutI	CAGTG	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	54, 77
CviJI	RGCY	3 cut(s)	5, 144, 212
CviKI_1	RGCY	3 cut(s)	5, 144, 212
CviQI	GTAC	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	43, 53
Eco47I	GGWCC	1 cut(s)	25
Eco91I	GGTNACC	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	43, 53
EcoT22I	ATGCAT	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	43, 53
FaeI	CATG	2 cut(s)	57, 80
FaiI	YATR	3 cut(s)	55, 78, 153
FatI	CATG	2 cut(s)	53, 76
Fnu4HI	GCNGC	2 cut(s)	81, 159
FokI	GGATG	2 cut(s)	137, 217
Fsp4HI	GCNGC	2 cut(s)	81, 159
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	2 cut(s)	81, 159
Hin1II	CATG	2 cut(s)	57, 80
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	49, 65
HpyCH4III	ACNGT	2 cut(s)	165, 245
HpyCH4V	TGCA	2 cut(s)	158, 197
Hsp92II	CATG	2 cut(s)	57, 80
LpnPI	CCDG	5 cut(s)	41, 81, 125, 206, 233
Lsp1109I	GCAGC	2 cut(s)	67, 170
LweI	GCATC	2 cut(s)	184, 195
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	2 cut(s)	47, 165
MboII	GAAGA	1 cut(s)	203
MluCI	AATT	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	1 cut(s)	181
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	53
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	57, 80
NmuCI	GTSAC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	199
NspI	RCATGY	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	82, 160
Psp6I	CCWGG	1 cut(s)	219
PspEI	GGTNACC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	81, 159
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	3 cut(s)	30, 41, 214
SfaNI	GCATC	2 cut(s)	184, 195
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	148
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	43, 53
TaaI	ACNGT	2 cut(s)	165, 245
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	2 cut(s)	80, 158
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	25
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.