Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7074799 .. 7077499

Gene Structure 2701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG091300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTCAGCATTTCTGTAGAGATTGTATTGCAATTGGATAGGTTCATTGACTGTGTGTATGTGCAGGACCTGCCCCGTACCTTCCCTGGTCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTCGTCGCGTTCTTGTTGTGTATTCGTTCCGTGATTCGGATGTGGGTTATTGTCAGATGAAGGAACAGGAGTTGCTTCTAACCTATCATGTTGGCGATGTTATTAATATTCTGCAGAAAACCACTCATCATCTATTTGATCCTGATGAGCTATTGACGTTCCAACTTCAATGGGGACACAAGAGGCATCCAGAATTAGAGAAATTTATCATGAAGATCCAAAGTGAAGCTGGTCTCTTAAGAAACAAGATGTATTTCAAGTGGAATGTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

133

Amino Acids

15.74

Weight (kDa)

6.13

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	22 - 61	5.5e-08	Rab-GTPase-TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AccII	CGCG	1 cut(s)	135
AclWI	GGATC	2 cut(s)	260, 337
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	100, 163
AflII	CTTAAG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	296, 385
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	2 cut(s)	277, 356
AluI	AGCT	2 cut(s)	277, 356
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	260, 337
AlwNI	CAGNNNCTG	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	329
AseI	ATTAAT	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	15, 239
BfrI	CTTAAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	85, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 163
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	85, 95
BseGI	GGATG	2 cut(s)	172, 313
BseLI	CCNNNNNNNGG	2 cut(s)	100, 163
BseXI	GCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	100, 163
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	265, 342
Bsp19I	CCATGG	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	260, 337
BspQI	GCTCTTC	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	85, 95
BssMI	GATC	2 cut(s)	265, 342
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	364
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	172, 313
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	2 cut(s)	268, 345
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	2 cut(s)	265, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	2 cut(s)	15, 239
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	172, 313
BveI	ACCTGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	70
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	4 cut(s)	96, 119, 215, 337
CviJI	RGCY	2 cut(s)	277, 356
CviKI_1	RGCY	2 cut(s)	277, 356
CviQI	GTAC	1 cut(s)	78
DpnI	GATC	2 cut(s)	267, 344
DpnII	GATC	2 cut(s)	265, 342
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	4 cut(s)	99, 122, 218, 340
FaiI	YATR	5 cut(s)	60, 97, 120, 216, 338
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	4 cut(s)	95, 118, 214, 336
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	179, 300
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	99, 122, 218, 340
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	166, 183
Hpy188III	TCNNGA	3 cut(s)	269, 317, 337
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	3 cut(s)	91, 107, 181
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	31, 64, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	4 cut(s)	99, 122, 218, 340
Kzo9I	GATC	2 cut(s)	265, 342
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	9 cut(s)	50, 72, 83, 99, 123, 179, 282, 330, 342
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	2 cut(s)	267, 344
MboI	GATC	2 cut(s)	265, 342
MboII	GAAGA	2 cut(s)	119, 352
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	342
MluCI	AATT	3 cut(s)	32, 320, 329
MmeI	TCCRAC	2 cut(s)	81, 313
MnlI	CCTC	1 cut(s)	303
MseI	TTAA	2 cut(s)	231, 365
MspCI	CTTAAG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	265, 342
NlaIII	CATG	4 cut(s)	99, 122, 218, 340
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	122
PagI	TCATGA	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	67
PshBI	ATTAAT	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	231, 365
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	265, 342
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	7 cut(s)	44, 72, 83, 212, 279, 287, 358
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	15, 239
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	3 cut(s)	32, 320, 329
SspI	AATATT	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	287
TasI	AATT	3 cut(s)	32, 320, 329
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	231, 365
Tru9I	TTAA	2 cut(s)	231, 365
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	34, 200, 353
TspGWI	ACGGA	1 cut(s)	146
Vha464I	CTTAAG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.