Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7418057 .. 7419847

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46947

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTCAGCATTTCTGTAGAGATTGTATTGCAATTGGATAGGTTCATTGACTGTGTGTATGTGCAGGACCTGCCCCGTACCTTCCCTGGTCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTCGTCGCGTTCTTGTTGTGTATTCGTTCCGTGATTCGGATGTGGGTTATTGTCAGGGCTTAAATTATGTTGCAGCACTGTTACTGCTTGTGATGAAAACAGAGGAAGATGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

81

Amino Acids

9.22

Weight (kDa)

4.64

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	22 - 81	6.1e-18	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	42 - 81	3e-06	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AccII	CGCG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	100, 163
AjnI	CCWGG	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	122, 200
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	109, 212
BciT130I	CCWGG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	2 cut(s)	123, 201
BlsI	GCNGC	2 cut(s)	124, 202
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	85, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 163
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	85, 95
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	100, 163
BseXI	GCAGC	2 cut(s)	109, 212
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	100, 163
Bsp19I	CCATGG	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	85, 95
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	53, 207
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	2 cut(s)	109, 212
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	96, 119
CviJI	RGCY	1 cut(s)	186
CviKI_1	RGCY	1 cut(s)	186
CviQI	GTAC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	99, 122
FaiI	YATR	4 cut(s)	60, 97, 120, 195
FatI	CATG	2 cut(s)	95, 118
Fnu4HI	GCNGC	2 cut(s)	123, 201
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	123, 201
GluI	GCNGC	2 cut(s)	123, 201
Hin1II	CATG	2 cut(s)	99, 122
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	2 cut(s)	91, 107
HpyCH4III	ACNGT	2 cut(s)	53, 207
HpyCH4V	TGCA	4 cut(s)	31, 64, 200, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	99, 122
LguI	GCTCTTC	1 cut(s)	132
LpnPI	CCDG	6 cut(s)	50, 72, 83, 99, 123, 167
Lsp1109I	GCAGC	2 cut(s)	109, 212
LweI	GCATC	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	89, 207
MboII	GAAGA	2 cut(s)	119, 245
MfeI	CAATTG	1 cut(s)	32
MluCI	AATT	2 cut(s)	32, 190
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	1 cut(s)	223
Mph1103I	ATGCAT	1 cut(s)	241
MseI	TTAA	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	95
NlaIII	CATG	2 cut(s)	99, 122
NmuCI	GTSAC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	241
NspI	RCATGY	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	124, 202
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	123, 201
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	3 cut(s)	44, 72, 83
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	67
Sse9I	AATT	2 cut(s)	32, 190
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	53, 207
TasI	AATT	2 cut(s)	32, 190
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	2 cut(s)	122, 200
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	34, 236
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.