Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038099.1

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

9767 .. 10363

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038099.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgtatggagccagacacaaaagagagctgtcctttgaatccctagctcaaatcccaatcttgaggccgagcatccatgcccggagggccaatctcaccgtcaagttccaggacctttatgggttcacggtggaagggaatgtggacgacgtcaatgtgttgaacgaggtgagggagaaggtgaggcagcaggggagggtttggtggtcaatggaggccaataaaggagccaattggtacttgcacaagtccgtttcggaaggccaatcgcttaaggcttcgctaaagttttcggctttggccaatgccattactctcaagaggctcatcaggaaggggattcccccggtgctccggcccaaggtctggttttcgctttccggggccgccaagaagaagtccaccgtgccggacagctattacaatgacttgaccattgccgtggagggcaaggtcacacctgccactaggcagattgatcatgtgagtctctcttggattgcaatcatggtttgtcgtgaatgttggatcttgactgttttttcgatcgagtgcttttcgggtttgaaattgttcatgtgtgatcgattttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

198

Amino Acids

22.55

Weight (kDa)

9.71

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	366
AciI	CCGC	1 cut(s)	387
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	361, 366
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	38, 163, 568
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	28, 47, 417
AluI	AGCT	3 cut(s)	28, 47, 417
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	536
AoxI	GGCC	7 cut(s)	65, 87, 216, 262, 300, 356, 384
ApeKI	GCWGC	1 cut(s)	187
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
Asp700I	GAANNNNTTC	1 cut(s)	572
AspS9I	GGNCC	4 cut(s)	87, 112, 357, 384
AsuC2I	CCSGG	3 cut(s)	82, 347, 382
AsuHPI	GGTGA	3 cut(s)	88, 181, 193
AvaII	GGWCC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	3 cut(s)	82, 347, 382
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	2 cut(s)	44, 468
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	188, 387
BlsI	GCNGC	2 cut(s)	189, 388
Bme1390I	CCNGG	4 cut(s)	82, 110, 347, 382
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	87, 112, 357, 384
BmiI	GGNNCC	3 cut(s)	10, 229, 385
BmrFI	CCNGG	4 cut(s)	82, 110, 347, 382
BmsI	GCATC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	82, 302
BpuMI	CCSGG	3 cut(s)	82, 347, 382
Bsa29I	ATCGAT	1 cut(s)	586
BsaBI	GATNNNNATC	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	345, 360, 381, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 366
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	586
BseDI	CCNNGG	4 cut(s)	345, 360, 381, 441
BseGI	GGATG	1 cut(s)	72
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	2 cut(s)	361, 366
BseMI	GCAATG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	549
BshFI	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
BshVI	ATCGAT	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	5 cut(s)	82, 347, 355, 381, 410
BslI	CCNNNNNNNGG	2 cut(s)	361, 366
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	4 cut(s)	478, 528, 546, 583
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
BspDI	ATCGAT	1 cut(s)	586
BspLI	GGNNCC	3 cut(s)	10, 229, 385
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	536
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	4 cut(s)	345, 360, 381, 441
BssMI	GATC	4 cut(s)	478, 528, 546, 583
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	4 cut(s)	100, 130, 406, 538
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	272
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	4 cut(s)	481, 531, 549, 586
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	4 cut(s)	478, 528, 546, 583
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	4 cut(s)	80, 108, 345, 380
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	528
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	528
Bsu15I	ATCGAT	1 cut(s)	586
BsuRI	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
BsuTUI	ATCGAT	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	469
Cfr13I	GGNCC	4 cut(s)	87, 112, 357, 384
ClaI	ATCGAT	1 cut(s)	586
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	4 cut(s)	77, 482, 508, 577
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	4 cut(s)	480, 530, 548, 585
DpnII	GATC	4 cut(s)	478, 528, 546, 583
EaeI	YGGCCR	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	4 cut(s)	80, 485, 511, 580
FaiI	YATR	6 cut(s)	6, 78, 120, 483, 509, 578
FatI	CATG	4 cut(s)	76, 481, 507, 576
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	2 cut(s)	188, 387
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	188, 387
FspBI	CTAG	2 cut(s)	44, 468
GluI	GCNGC	2 cut(s)	188, 387
HaeIII	GGCC	7 cut(s)	67, 89, 218, 264, 302, 358, 386
HapII	CCGG	5 cut(s)	82, 347, 355, 381, 410
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	80, 485, 511, 580
HinfI	GANTC	3 cut(s)	38, 340, 487
HpaII	CCGG	5 cut(s)	82, 347, 355, 381, 410
HphI	GGTGA	3 cut(s)	88, 181, 193
Hpy166II	GTNNAC	3 cut(s)	126, 145, 402
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	5 cut(s)	61, 319, 331, 518, 532
Hpy8I	GTNNAC	3 cut(s)	126, 145, 402
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	4 cut(s)	128, 172, 254, 328
HpyCH4III	ACNGT	4 cut(s)	100, 130, 406, 538
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	244, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	80, 485, 511, 580
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	478, 528, 546, 583
LmnI	GCTCC	3 cut(s)	8, 227, 357
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	44, 468
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	4 cut(s)	480, 530, 548, 585
MboI	GATC	4 cut(s)	478, 528, 546, 583
MboII	GAAGA	1 cut(s)	406
MfeI	CAATTG	1 cut(s)	232
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	2 cut(s)	232, 569
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	506
MnlI	CCTC	9 cut(s)	57, 78, 160, 165, 177, 189, 208, 315, 439
Mox20I	TGGCCA	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	5 cut(s)	82, 347, 355, 381, 410
MspR9I	CCNGG	4 cut(s)	82, 110, 347, 382
MunI	CAATTG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	3 cut(s)	82, 347, 382
NdeII	GATC	4 cut(s)	478, 528, 546, 583
NlaIII	CATG	4 cut(s)	80, 485, 511, 580
NlaIV	GGNNCC	3 cut(s)	10, 229, 385
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	1 cut(s)	454
PaqCI	CACCTGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	2 cut(s)	38, 340
PflFI	GACNNNGTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	189, 388
Ple19I	CGATCG	1 cut(s)	549
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	10, 229, 385
PspPI	GGNCC	4 cut(s)	87, 112, 357, 384
PspPPI	RGGWCCY	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	528
PsyI	GACNNNGTC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	549
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	188, 387
Sau3AI	GATC	4 cut(s)	478, 528, 546, 583
Sau96I	GGNCC	4 cut(s)	87, 112, 357, 384
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	4 cut(s)	82, 110, 347, 382
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	3 cut(s)	61, 272, 317
SmoI	CTYRAG	3 cut(s)	61, 272, 317
Sse9I	AATT	2 cut(s)	232, 569
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	2 cut(s)	44, 468
StyD4I	CCNGG	4 cut(s)	80, 108, 345, 380
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	4 cut(s)	100, 130, 406, 538
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	545, 549, 586
TasI	AATT	2 cut(s)	232, 569
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	38, 340
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	1 cut(s)	565
TspGWI	ACGGA	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	149
Van91I	CCANNNNNTGG	1 cut(s)	366
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	2 cut(s)	44, 468
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.