TBC1 domain family member
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890 |
| fragaria_vesca | FvH4_6g41560 |
| malus_domestica | MD09G1118900.v1.1 MD17G1109700.v1.1 |
| prunus_persica | Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1 |
| pyrus_communis | pycom09g04380 pycom17g10190 pycom17g10200 |
| rosa_chinensis | RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241 |
| rosa_laevigata | RLG00000020974 |
| rosa_multiflora | Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00092380 |
| rosa_rugosa | Rorug02G0459000 Rorug02G0459100 |
| rosa_samantha | Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800 |
| rosa_wichuraiana | Rw2G043350 Rw2G043410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 107 |
| AcsI | RAATTY | 1 cut(s) | 241 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 253 |
| AgsI | TTSAA | 1 cut(s) | 233 |
| AluBI | AGCT | 2 cut(s) | 124, 217 |
| AluI | AGCT | 2 cut(s) | 124, 217 |
| AlwI | GGATC | 1 cut(s) | 107 |
| ApoI | RAATTY | 1 cut(s) | 241 |
| AseI | ATTAAT | 1 cut(s) | 78 |
| BccI | CCATC | 1 cut(s) | 66 |
| BclI | TGATCA | 2 cut(s) | 142, 220 |
| BfaI | CTAG | 1 cut(s) | 301 |
| BfmI | CTRYAG | 1 cut(s) | 86 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 253 |
| Bse118I | RCCGGY | 1 cut(s) | 199 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 253 |
| BsiSI | CCGG | 1 cut(s) | 200 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 253 |
| Bsp143I | GATC | 3 cut(s) | 112, 142, 220 |
| BspMAI | CTGCAG | 1 cut(s) | 90 |
| BspPI | GGATC | 1 cut(s) | 107 |
| BsrFI | RCCGGY | 1 cut(s) | 199 |
| BssAI | RCCGGY | 1 cut(s) | 199 |
| BssMI | GATC | 3 cut(s) | 112, 142, 220 |
| Bst4CI | ACNGT | 2 cut(s) | 133, 237 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstKTI | GATC | 3 cut(s) | 115, 145, 223 |
| BstMBI | GATC | 3 cut(s) | 112, 142, 220 |
| BstSFI | CTRYAG | 1 cut(s) | 86 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 65 |
| BtgZI | GCGATG | 1 cut(s) | 84 |
| BtsI | GCAGTG | 1 cut(s) | 210 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| Cfr10I | RCCGGY | 1 cut(s) | 199 |
| CviAII | CATG | 2 cut(s) | 8, 62 |
| CviJI | RGCY | 3 cut(s) | 14, 124, 217 |
| CviKI_1 | RGCY | 3 cut(s) | 14, 124, 217 |
| DpnI | GATC | 3 cut(s) | 114, 144, 222 |
| DpnII | GATC | 3 cut(s) | 112, 142, 220 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| FaeI | CATG | 2 cut(s) | 11, 65 |
| FaiI | YATR | 4 cut(s) | 9, 63, 173, 269 |
| FatI | CATG | 2 cut(s) | 7, 61 |
| FbaI | TGATCA | 2 cut(s) | 142, 220 |
| FspBI | CTAG | 1 cut(s) | 301 |
| HapII | CCGG | 1 cut(s) | 200 |
| Hin1II | CATG | 2 cut(s) | 11, 65 |
| HinfI | GANTC | 1 cut(s) | 274 |
| HpaII | CCGG | 1 cut(s) | 200 |
| Hpy166II | GTNNAC | 1 cut(s) | 159 |
| Hpy188I | TCNGA | 2 cut(s) | 147, 225 |
| Hpy188III | TCNNGA | 1 cut(s) | 116 |
| Hpy8I | GTNNAC | 1 cut(s) | 159 |
| HpyAV | CCTTC | 2 cut(s) | 28, 205 |
| HpyCH4III | ACNGT | 2 cut(s) | 133, 237 |
| HpyCH4V | TGCA | 2 cut(s) | 88, 284 |
| Hsp92II | CATG | 2 cut(s) | 11, 65 |
| Ksp22I | TGATCA | 2 cut(s) | 142, 220 |
| Kzo9I | GATC | 3 cut(s) | 112, 142, 220 |
| LmnI | GCTCC | 1 cut(s) | 214 |
| LpnPI | CCDG | 4 cut(s) | 26, 129, 213, 260 |
| MaeI | CTAG | 1 cut(s) | 301 |
| MaeIII | GTNAC | 1 cut(s) | 290 |
| MalI | GATC | 3 cut(s) | 114, 144, 222 |
| MboI | GATC | 3 cut(s) | 112, 142, 220 |
| MboII | GAAGA | 1 cut(s) | 269 |
| MluCI | AATT | 3 cut(s) | 75, 241, 251 |
| MlyI | GAGTC | 1 cut(s) | 283 |
| MseI | TTAA | 3 cut(s) | 27, 78, 239 |
| MspI | CCGG | 1 cut(s) | 200 |
| NdeII | GATC | 3 cut(s) | 112, 142, 220 |
| NlaIII | CATG | 2 cut(s) | 11, 65 |
| NmuCI | GTSAC | 1 cut(s) | 290 |
| PleI | GAGTC | 1 cut(s) | 282 |
| PpsI | GAGTC | 1 cut(s) | 282 |
| PshBI | ATTAAT | 1 cut(s) | 78 |
| PstI | CTGCAG | 1 cut(s) | 90 |
| SaqAI | TTAA | 3 cut(s) | 27, 78, 239 |
| Sau3AI | GATC | 3 cut(s) | 112, 142, 220 |
| SchI | GAGTC | 1 cut(s) | 283 |
| SetI | ASST | 4 cut(s) | 126, 154, 219, 302 |
| SfcI | CTRYAG | 1 cut(s) | 86 |
| SgeI | CNNG | 9 cut(s) | 20, 53, 74, 128, 206, 212, 230, 259, 285 |
| Sse9I | AATT | 3 cut(s) | 75, 241, 251 |
| SspI | AATATT | 1 cut(s) | 82 |
| SspMI | CTAG | 1 cut(s) | 301 |
| TaaI | ACNGT | 2 cut(s) | 133, 237 |
| TasI | AATT | 3 cut(s) | 75, 241, 251 |
| Tru1I | TTAA | 3 cut(s) | 27, 78, 239 |
| Tru9I | TTAA | 3 cut(s) | 27, 78, 239 |
| TscAI | CASTG | 1 cut(s) | 210 |
| TseFI | GTSAC | 1 cut(s) | 290 |
| Tsp45I | GTSAC | 1 cut(s) | 290 |
| TspDTI | ATGAA | 2 cut(s) | 47, 224 |
| TspRI | CASTG | 1 cut(s) | 210 |
| VspI | ATTAAT | 1 cut(s) | 78 |
| XapI | RAATTY | 1 cut(s) | 241 |
| XspI | CTAG | 1 cut(s) | 301 |