Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315133.1

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 211

Gene Structure 211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315133.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

atggtccgcatttctgtagagattgtattgcaattggataggttcattgactgtgtgtatgtgcaggacctgccccgtaccttccctggtcacccatggttggacaccccagaaggacatgctgctctttgtcgagttcttgttgtgtattcgttccgtgattcggatgtgggttattgtcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

61

Amino Acids

7.04

Weight (kDa)

4.95

Isoelectric Point (pI)

22.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AciI	CCGC	1 cut(s)	7
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	2 cut(s)	100, 163
AjnI	CCWGG	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	4, 67
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	4, 67
BbvI	GCAGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	2 cut(s)	4, 67
BmgT120I	GGNCC	2 cut(s)	4, 67
BmrFI	CCNGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	85, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 163
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	85, 95
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	100, 163
BseXI	GCAGC	1 cut(s)	109
BsgI	GTGCAG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	100, 163
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	85, 95
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstDSI	CCRYGG	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	78
CaiI	CAGNNNCTG	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	4, 67
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	2 cut(s)	96, 119
CviQI	GTAC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	4, 67
Eco91I	GGTNACC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	99, 122
FaiI	YATR	3 cut(s)	60, 97, 120
FatI	CATG	2 cut(s)	95, 118
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	99, 122
HinfI	GANTC	1 cut(s)	161
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	91, 107
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	31, 64
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	99, 122
LpnPI	CCDG	5 cut(s)	50, 72, 83, 99, 123
Lsp1109I	GCAGC	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	89
MfeI	CAATTG	1 cut(s)	32
MluCI	AATT	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	95
NlaIII	CATG	2 cut(s)	99, 122
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	85
PspEI	GGTNACC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	4, 67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	123
Sau96I	GGNCC	2 cut(s)	4, 67
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	3 cut(s)	44, 72, 83
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	4, 67
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	7
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	34
TspGWI	ACGGA	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	4, 67
XceI	RCATGY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.