Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7222772 .. 7226083

Gene Structure 3312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG092500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGATGAAGATGACCTCTTCGAAGCGATCGATAAGAGACCTGCCCCGTACCTTCCCTGGTCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTCGTCGCGTTCTTGTTGTGTATTCGTTCCGTGATTCGGATGTGGGTTATTGTCAGGGCTTAAATTATGTTGCAGCACTGTTACTGCTTGTGATGAAAACAGAGGAAGATGCATTTTGGATGCTAGCTGTTCTCCTGGAAAATGTCTTGGTCAATGACTGTTATACAAATAATTTATCAGGATGCCATGTCGAACAAAGAGTTTTCAAGGATTTTCTTGCTAAAATGTGTCCAAGGGTAGCGGCGCATTTGGAAGCATTGGAGTTTGATGTATCCCTTGTTGCCACAGAGTGGTTTCTTTGCCTCTTTTCTAAGAGCTTGCCTTCAGAGGTTAGAGATACTTTTGACTCTATCTATCTTTTTTACTTTGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

157

Amino Acids

18.09

Weight (kDa)

5.32

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	12 - 143	1.8e-39	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	32 - 148	1.1e-21	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	405
AdeI	CACNNNGTG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	3 cut(s)	70, 133, 387
AgsI	TTSAA	2 cut(s)	304, 467
AjnI	CCWGG	2 cut(s)	55, 231
AluBI	AGCT	2 cut(s)	224, 414
AluI	AGCT	2 cut(s)	224, 414
Alw26I	GTCTC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	92, 170
AspLEI	GCGC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	20
AsuNHI	GCTAGC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	79, 182
BciT130I	CCWGG	2 cut(s)	57, 233
BciVI	GTATCC	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	3 cut(s)	93, 171, 339
BlsI	GCNGC	3 cut(s)	94, 172, 340
Bme1390I	CCNGG	2 cut(s)	57, 233
BmrFI	CCNGG	2 cut(s)	57, 233
BmsI	GCATC	3 cut(s)	196, 207, 269
BmtI	GCTAGC	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	55, 65, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 133, 387
BseBI	CCWGG	2 cut(s)	57, 233
BseCI	ATCGAT	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	55, 65, 329
BseGI	GGATG	3 cut(s)	142, 222, 284
BseLI	CCNNNNNNNGG	3 cut(s)	70, 133, 387
BseXI	GCAGC	2 cut(s)	79, 182
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	29
BslI	CCNNNNNNNGG	3 cut(s)	70, 133, 387
BsmAI	GTCTC	1 cut(s)	30
Bso31I	GGTCTC	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	1 cut(s)	338
BspDI	ATCGAT	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	224
BspQI	GCTCTTC	1 cut(s)	102
BspT104I	TTCGAA	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	30
BssECI	CCNNGG	3 cut(s)	55, 65, 329
BssMI	GATC	1 cut(s)	26
BssT1I	CCWWGG	2 cut(s)	65, 329
Bst2UI	CCWGG	2 cut(s)	57, 233
Bst4CI	ACNGT	2 cut(s)	177, 257
Bst6I	CTCTTC	2 cut(s)	22, 102
BstBI	TTCGAA	1 cut(s)	20
BstC8I	GCNNGC	2 cut(s)	222, 416
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	65
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	3 cut(s)	142, 222, 284
BstFNI	CGCG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	26
BstMCI	CGRYCG	1 cut(s)	29
BstNI	CCWGG	2 cut(s)	57, 233
BstNSI	RCATGY	1 cut(s)	92
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	55, 231
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	79, 182
Bsu15I	ATCGAT	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	379
BsuTUI	ATCGAT	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	142, 222, 284
BtsIMutI	CAGTG	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	222, 416
CfoI	GCGC	1 cut(s)	343
ClaI	ATCGAT	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	3 cut(s)	66, 89, 284
CviJI	RGCY	3 cut(s)	156, 224, 414
CviKI_1	RGCY	3 cut(s)	156, 224, 414
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
DraIII	CACNNNGTG	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	22, 102
EarI	CTCTTC	2 cut(s)	22, 102
Eco130I	CCWWGG	2 cut(s)	65, 329
Eco31I	GGTCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	405
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	55, 231
EcoT14I	CCWWGG	2 cut(s)	65, 329
EcoT22I	ATGCAT	1 cut(s)	211
ErhI	CCWWGG	2 cut(s)	65, 329
FaeI	CATG	3 cut(s)	69, 92, 287
FaiI	YATR	6 cut(s)	67, 90, 165, 261, 285, 472
FatI	CATG	3 cut(s)	65, 88, 283
Fnu4HI	GCNGC	3 cut(s)	93, 171, 339
FokI	GGATG	3 cut(s)	149, 229, 291
Fsp4HI	GCNGC	3 cut(s)	93, 171, 339
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	3 cut(s)	93, 171, 339
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	3 cut(s)	69, 92, 287
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	131, 443
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	136, 424
Hpy188III	TCNNGA	1 cut(s)	276
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	61, 77, 429
HpyCH4III	ACNGT	2 cut(s)	177, 257
HpyCH4V	TGCA	2 cut(s)	170, 209
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	69, 92, 287
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	1 cut(s)	26
LguI	GCTCTTC	1 cut(s)	102
LpnPI	CCDG	8 cut(s)	42, 53, 69, 93, 137, 218, 245, 261
Lsp1109I	GCAGC	2 cut(s)	79, 182
LweI	GCATC	3 cut(s)	196, 207, 269
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	2 cut(s)	59, 177
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	4 cut(s)	9, 19, 89, 215
MluCI	AATT	2 cut(s)	160, 268
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	25, 193, 410, 418
Mph1103I	ATGCAT	1 cut(s)	211
MseI	TTAA	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	57, 233
MvaI	CCWGG	2 cut(s)	57, 233
MvnI	CGCG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	220
NlaIII	CATG	3 cut(s)	69, 92, 287
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	387
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	94, 172, 340
Ple19I	CGATCG	1 cut(s)	29
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	55, 231
PspEI	GGTNACC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	55, 231
PvuI	CGATCG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	3 cut(s)	93, 171, 339
Sau3AI	GATC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	57, 233
SetI	ASST	6 cut(s)	17, 42, 53, 226, 416, 429
SfaNI	GCATC	3 cut(s)	196, 207, 269
SfuI	TTCGAA	1 cut(s)	20
Sse9I	AATT	2 cut(s)	160, 268
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	55, 231
StyI	CCWWGG	2 cut(s)	65, 329
TaaI	ACNGT	2 cut(s)	177, 257
TaqI	TCGA	3 cut(s)	20, 29, 288
TasI	AATT	2 cut(s)	160, 268
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	92, 170
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	20, 206
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	387
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.