Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Reverse (-)

77587769 .. 77591730

Gene Structure 3962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG547400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTATGGAGCCAGACACAAAAGAGAGCTGTCCTTTGAATCCCTAGCTCAAATCCCAATCTTGAGGCCGAGCATCCATGCCCGGAGGGCCAATCTCACCGTCAAGTTCCAGGACCTTTATGGGTTCACGGTGGAAGGGAATGTGGACGACGTCAATGTGTTGAACGAGGTGAGGGAGAAGGTGAGGCAGCAGGGGAGGGTTTGGTGGTCAATGGAGGCCAATAAAGGAGCCAATTGGTACTTGCACAAGTCCGTTTCGGAAGGCCAATCGCTTAAGGCCTCGCTAAAGTTTTCGGCTTTGGCCAATGCCATTACTCTCAAGAGGCTCATCAGGAAGGGGATTCCCCCGGTGCTCCGGCCCAAGGTCTGGTTTTCGCTTTCCGGGGCCGCCAAGAAGAAGTCCACCGTGCCGGACAGCTATTACAATGACTTGACCATTGCCGTGGAGGGCAAGGTCACACCTGCCACTAGGCAGATTGATCATGACCTGCCCCGTACCTTCCCTGGTCACCCATGGTTGGACACCCCAGAAGGACATGCTGCTCTTCGTCGCGTTCTTGTTGTGTATTCGTTCCGGGATTCGGATGTGGGTTATTGTCAGGGCTTAAATTATGTTGCAGCACTGTTACTGCTTGTGATGAAAACAGAGGAAGATGCATTTTGGATGCTAGCTGTTCTCCTGGAAAATGTCTTGGTCAATGACTGTTATACAAATAATTTATCAGGATGCCATGTCGAACAAAGAGTTTTCAAGGATTTTCTTGCTAAAATGTGTCCAAGGGTAGCGGCACATTTGGAAGCATTGGAGTTTGATGTATCCCTTGTTGCCACAGAGTGGTTTCTTTGCCTCTTTTCTAAGAGCTTGCCTTCAGAGGTTAGGGATACTGTTGACTCTATCTCTCTTTGTTACTTTGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

306

Amino Acids

34.68

Weight (kDa)

8.44

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	118 - 291	1.4e-43	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	181 - 290	5.7e-21	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	469
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	2 cut(s)	469, 495
AccB7I	CCANNNNNTGG	2 cut(s)	366, 834
AccII	CGCG	1 cut(s)	552
AciI	CCGC	2 cut(s)	387, 785
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	852
AcyI	GRCGYC	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	834
AfaI	GTAC	2 cut(s)	239, 496
AfiI	CCNNNNNNNGG	5 cut(s)	361, 366, 517, 580, 834
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	38, 163, 751, 914
AjnI	CCWGG	3 cut(s)	108, 502, 678
AluBI	AGCT	5 cut(s)	28, 47, 417, 671, 861
AluI	AGCT	5 cut(s)	28, 47, 417, 671, 861
Alw21I	GWGCWC	1 cut(s)	354
AoxI	GGCC	8 cut(s)	65, 87, 216, 262, 276, 300, 356, 384
ApeKI	GCWGC	3 cut(s)	187, 539, 617
AspS9I	GGNCC	4 cut(s)	87, 112, 357, 384
AsuC2I	CCSGG	4 cut(s)	82, 347, 382, 575
AsuHPI	GGTGA	4 cut(s)	88, 181, 193, 500
AsuNHI	GCTAGC	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	199, 526, 629
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	3 cut(s)	110, 504, 680
BciVI	GTATCC	2 cut(s)	826, 874
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	4 cut(s)	82, 347, 382, 575
BfaI	CTAG	3 cut(s)	44, 468, 668
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	2 cut(s)	469, 495
BfuI	GTATCC	2 cut(s)	826, 874
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
BlsI	GCNGC	5 cut(s)	189, 388, 541, 619, 787
Bme1390I	CCNGG	7 cut(s)	82, 110, 347, 382, 504, 575, 680
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	87, 112, 357, 384
BmiI	GGNNCC	3 cut(s)	10, 229, 385
BmrFI	CCNGG	7 cut(s)	82, 110, 347, 382, 504, 575, 680
BmsI	GCATC	4 cut(s)	81, 643, 654, 716
BmtI	GCTAGC	1 cut(s)	671
BpuEI	CTTGAG	2 cut(s)	82, 302
BpuMI	CCSGG	4 cut(s)	82, 347, 382, 575
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	7 cut(s)	345, 360, 381, 441, 502, 512, 776
Bsc4I	CCNNNNNNNGG	5 cut(s)	361, 366, 517, 580, 834
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	110, 504, 680
BseDI	CCNNGG	7 cut(s)	345, 360, 381, 441, 502, 512, 776
BseGI	GGATG	4 cut(s)	72, 589, 669, 731
BseLI	CCNNNNNNNGG	5 cut(s)	361, 366, 517, 580, 834
BseMI	GCAATG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	199, 526, 629
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	8 cut(s)	67, 89, 218, 264, 278, 302, 358, 386
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	6 cut(s)	82, 347, 355, 381, 410, 574
BslI	CCNNNNNNNGG	5 cut(s)	361, 366, 517, 580, 834
BsnI	GGCC	8 cut(s)	67, 89, 218, 264, 278, 302, 358, 386
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	478
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	2 cut(s)	387, 785
BspANI	GGCC	8 cut(s)	67, 89, 218, 264, 278, 302, 358, 386
BspFNI	CGCG	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	10, 229, 385
BspMI	ACCTGC	2 cut(s)	469, 495
BspOI	GCTAGC	1 cut(s)	671
BspQI	GCTCTTC	1 cut(s)	549
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	7 cut(s)	345, 360, 381, 441, 502, 512, 776
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	3 cut(s)	360, 512, 776
Bst2UI	CCWGG	3 cut(s)	110, 504, 680
Bst4CI	ACNGT	6 cut(s)	100, 130, 406, 624, 704, 886
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	669, 863
BstDEI	CTNAG	1 cut(s)	855
BstDSI	CCRYGG	2 cut(s)	441, 512
BstEII	GGTNACC	1 cut(s)	506
BstF5I	GGATG	4 cut(s)	72, 589, 669, 731
BstFNI	CGCG	1 cut(s)	552
BstKTI	GATC	1 cut(s)	481
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	3 cut(s)	110, 504, 680
BstNSI	RCATGY	1 cut(s)	539
BstPI	GGTNACC	1 cut(s)	506
BstSCI	CCNGG	7 cut(s)	80, 108, 345, 380, 502, 573, 678
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	199, 526, 629
BstXI	CCANNNNNNTGG	1 cut(s)	442
BsuI	GTATCC	2 cut(s)	826, 874
BsuRI	GGCC	8 cut(s)	67, 89, 218, 264, 278, 302, 358, 386
BtgI	CCRYGG	2 cut(s)	441, 512
BtsCI	GGATG	4 cut(s)	72, 589, 669, 731
BtsIMutI	CAGTG	1 cut(s)	620
BveI	ACCTGC	2 cut(s)	469, 495
Cac8I	GCNNGC	2 cut(s)	669, 863
CciI	TCATGA	1 cut(s)	481
Cfr13I	GGNCC	4 cut(s)	87, 112, 357, 384
Csp6I	GTAC	2 cut(s)	238, 495
CviAII	CATG	5 cut(s)	77, 482, 513, 536, 731
CviQI	GTAC	2 cut(s)	238, 495
DdeI	CTNAG	1 cut(s)	855
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DraIII	CACNNNGTG	1 cut(s)	834
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco130I	CCWWGG	3 cut(s)	360, 512, 776
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	852
Eco91I	GGTNACC	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	506
EcoRII	CCWGG	3 cut(s)	108, 502, 678
EcoT14I	CCWWGG	3 cut(s)	360, 512, 776
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	3 cut(s)	360, 512, 776
FaeI	CATG	5 cut(s)	80, 485, 516, 539, 734
FatI	CATG	5 cut(s)	76, 481, 512, 535, 730
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
FokI	GGATG	4 cut(s)	59, 596, 676, 738
Fsp4HI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
FspBI	CTAG	3 cut(s)	44, 468, 668
GluI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
HaeIII	GGCC	8 cut(s)	67, 89, 218, 264, 278, 302, 358, 386
HapII	CCGG	6 cut(s)	82, 347, 355, 381, 410, 574
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	5 cut(s)	80, 485, 516, 539, 734
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HinfI	GANTC	4 cut(s)	38, 340, 578, 890
HpaII	CCGG	6 cut(s)	82, 347, 355, 381, 410, 574
HphI	GGTGA	4 cut(s)	88, 181, 193, 500
Hpy166II	GTNNAC	4 cut(s)	126, 145, 402, 889
Hpy188I	TCNGA	3 cut(s)	259, 583, 871
Hpy188III	TCNNGA	5 cut(s)	61, 319, 331, 482, 723
Hpy8I	GTNNAC	4 cut(s)	126, 145, 402, 889
Hpy99I	CGWCG	2 cut(s)	152, 552
HpyAV	CCTTC	7 cut(s)	128, 172, 254, 328, 508, 524, 876
HpyCH4III	ACNGT	6 cut(s)	100, 130, 406, 624, 704, 886
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	244, 617, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	855
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	5 cut(s)	80, 485, 516, 539, 734
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	478
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	3 cut(s)	8, 227, 357
Lsp1109I	GCAGC	3 cut(s)	199, 526, 629
LweI	GCATC	4 cut(s)	81, 643, 654, 716
MaeI	CTAG	3 cut(s)	44, 468, 668
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	454, 506, 624, 905
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	3 cut(s)	406, 536, 662
MfeI	CAATTG	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	354
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	3 cut(s)	232, 607, 715
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	1 cut(s)	498
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	2 cut(s)	273, 605
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	6 cut(s)	82, 347, 355, 381, 410, 574
MspR9I	CCNGG	7 cut(s)	82, 110, 347, 382, 504, 575, 680
MunI	CAATTG	1 cut(s)	232
MvaI	CCWGG	3 cut(s)	110, 504, 680
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	4 cut(s)	82, 347, 382, 575
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	1 cut(s)	478
NheI	GCTAGC	1 cut(s)	667
NlaIII	CATG	5 cut(s)	80, 485, 516, 539, 734
NlaIV	GGNNCC	3 cut(s)	10, 229, 385
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	454, 506
NsiI	ATGCAT	1 cut(s)	658
NspI	RCATGY	1 cut(s)	539
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	38, 340, 578
PflFI	GACNNNGTC	1 cut(s)	149
PflMI	CCANNNNNTGG	2 cut(s)	366, 834
PfoI	TCCNGGA	3 cut(s)	108, 573, 678
PkrI	GCNGC	5 cut(s)	189, 388, 541, 619, 787
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	3 cut(s)	108, 502, 678
PspEI	GGTNACC	1 cut(s)	506
PspGI	CCWGG	3 cut(s)	108, 502, 678
PspN4I	GGNNCC	3 cut(s)	10, 229, 385
PspPI	GGNCC	4 cut(s)	87, 112, 357, 384
PspPPI	RGGWCCY	1 cut(s)	112
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	239, 496
RsaNI	GTAC	2 cut(s)	238, 495
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	273, 605
SatI	GCNGC	5 cut(s)	188, 387, 540, 618, 786
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	4 cut(s)	87, 112, 357, 384
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	7 cut(s)	82, 110, 347, 382, 504, 575, 680
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	4 cut(s)	81, 643, 654, 716
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	3 cut(s)	61, 272, 317
SmoI	CTYRAG	3 cut(s)	61, 272, 317
Sse9I	AATT	3 cut(s)	232, 607, 715
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	2 cut(s)	387, 785
SspMI	CTAG	3 cut(s)	44, 468, 668
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	7 cut(s)	80, 108, 345, 380, 502, 573, 678
StyI	CCWWGG	3 cut(s)	360, 512, 776
TaaI	ACNGT	6 cut(s)	100, 130, 406, 624, 704, 886
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	735
TasI	AATT	3 cut(s)	232, 607, 715
TauI	GCSGC	2 cut(s)	389, 788
TfiI	GAWTC	3 cut(s)	38, 340, 578
Tru1I	TTAA	2 cut(s)	273, 605
Tru9I	TTAA	2 cut(s)	273, 605
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	2 cut(s)	454, 506
TseI	GCWGC	3 cut(s)	187, 539, 617
Tsp45I	GTSAC	2 cut(s)	454, 506
TspDTI	ATGAA	1 cut(s)	653
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	627
Tth111I	GACNNNGTC	1 cut(s)	149
Van91I	CCANNNNNTGG	2 cut(s)	366, 834
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	539
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	3 cut(s)	44, 468, 668
ZraI	GACGTC	1 cut(s)	151
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.