Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7747765 .. 7748373

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG092300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTGTCCAAGGGTAGCAGCGCATTTGGATGCATTGGAGTTTGATGTATCCCTTGTTGCCACAGAGTGGATTCTTTGCCTCTTTTCTAAGAGCTTGCCTTCAGAGATGAAGGAACAGGAGTTGCTTCTAACCTATCATGTTGGCGATGTCATTAATATTCTGCAGAAAACCACTCATCATCTATTTGATCCTGATGAGCTATTGACGGTAACACATTTCTCTGTGCTTGCTCTTTTTAGTGATGCGCTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

84

Amino Acids

9.51

Weight (kDa)

4.68

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	66
AclWI	GGATC	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	84
AdeI	CACNNNGTG	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	66
AluBI	AGCT	2 cut(s)	93, 199
AluI	AGCT	2 cut(s)	93, 199
AlwI	GGATC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	17
AseI	ATTAAT	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	22, 247
BbvI	GCAGC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
BmsI	GCATC	2 cut(s)	19, 232
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	95, 228
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	34
BstHHI	GCGC	2 cut(s)	22, 247
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	95, 228
CfoI	GCGC	2 cut(s)	22, 247
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	2 cut(s)	93, 199
CviKI_1	RGCY	2 cut(s)	93, 199
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
DraIII	CACNNNGTG	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	1 cut(s)	140
FaiI	YATR	1 cut(s)	138
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	2 cut(s)	21, 246
GluI	GCNGC	1 cut(s)	18
HhaI	GCGC	2 cut(s)	22, 247
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	2 cut(s)	20, 245
HinP1I	GCGC	2 cut(s)	20, 245
HinfI	GANTC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	103, 108
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	32, 163
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	2 cut(s)	20, 245
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	2 cut(s)	101, 204
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	2 cut(s)	19, 232
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MnlI	CCTC	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	27
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	187
SetI	ASST	3 cut(s)	95, 134, 201
SfaNI	GCATC	2 cut(s)	19, 232
SfcI	CTRYAG	1 cut(s)	161
SgeI	CNNG	7 cut(s)	21, 65, 106, 128, 149, 203, 239
SmiMI	CAYNNNNRTG	1 cut(s)	27
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	66
VspI	ATTAAT	1 cut(s)	153
XspI	CTAG	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.