FvH4_6g41560

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
32639735 .. 32642636
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41560.t1

Sequence Viewer

Length: 1224 bp
ATGTATGGAGGCAGACACAACAGAGAGCTGTCCTTCGAATCCCTGGCTCAAATCCCAATCCTGCGGCCGAGCATCCATGCCCGGAGGGCCAATCTGACCGTCAAGTTCCAGGACCTTTATGGGTTCACGGTGGAAGGGAATGTGGATGACGTCAACGTGTTGAATGAGGTGAGGGAGAAGGTGAGACAGCAAGGGAGGGTTTGGTGGTCAATGGAAGCCAATAAAGGAGCCAATTGGTACTTGCACAAGTCCATTTCTGAAGGTAAATCGCTTAAGGCTTCGTTGAAGTTTTCGGCTTTGGCTAATGCCATTACTCTCAAGAGGTTGATCAGGAAGGGCATTCCGCCTGTGCTGCGCCCCAAGGTGTGGTTTTCGCTTTCCGGGGCGGCTAAGAAGAAGTCCACCGTGCCGGAGAGCTATTATAATGACTTGACCATTGCCGTCGAGGGCAAGGTCACGCCTGCCACCAGGCAGATTGATCATGACTTGCCCCGTACGTTCCCTGGTCATCCCTGGTTGGACACCCCAGAGGGACATGCTGCTCTTCGTCGCGTTCTTGTTGGGTATTCATTCCGTGATTCAGAAGTTGGATATTGTCAGGGCTTAAATTATGTTGCGGCACTGTTACTGCTTGTGATGAAAACAGAGGAAGATGCATTTTGGATGCTAGCTGTTCTCCTGGAGAATGTCTTGGTCAATGACTGTTATACAAATAATTTATCAGGATGTCATGTCGAACAAAGAGTTTTCAAGGATTTCCTTGCTAAGATGTGTCCAAGGATGGCAGCGCATTTGGAAGCATTGGAGTTTGATGTATCCCTTGTTGCCACTGAGTGGTTTCTGTGCCTCTTTTCTAAGAGCTTGCCTTCAGAGACGACTCTAAGGGTGTGGGATGTCCTTTTCTACGAAGGGGCGAAAATTATGTTTCATGTGGCTTTAGCAATCTTTAAGATGAAGGAACATGAGTTGCTTACAACCCATCATGTTGGAGATGTAATTAATATTCTACAGAAAACCACTCATCATCTATTTGATCCAGATGAGCTATTGACGGTAGCATTTGATCAGATAGGTTCCTTTACAACCAACACTATATCGAAGCAGAGGAAAAAGCAAGAACCAGAAGTGATGAAGGAGCTTGATCAGAGATTAAGACGGCTAAATTCCCTGAAATTGGAAGACAGTAATATATCGAGTCAAAATGCGGAATGTCACTCAACCTAG

Protein Analysis

408

Amino Acids

46.4

Weight (kDa)

8.4

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 118 - 324 5.9e-56 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 181 - 344 3.7e-32 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AatII GACGTC 1 cut(s) 153
AccB7I CCANNNNNTGG 2 cut(s) 366, 834
AccII CGCG 1 cut(s) 552
AciI CCGC 5 cut(s) 64, 344, 386, 617, 1205
AclWI GGATC 1 cut(s) 1028
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 1 cut(s) 1162
AcuI CTGAAG 2 cut(s) 279, 852
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 834
AfaI GTAC 2 cut(s) 239, 496
AfiI CCNNNNNNNGG 3 cut(s) 366, 834, 1174
AflII CTTAAG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 3 cut(s) 163, 286, 751
AjnI CCWGG 6 cut(s) 42, 108, 467, 502, 512, 678
AluBI AGCT 6 cut(s) 28, 417, 671, 861, 1045, 1138
AluI AGCT 6 cut(s) 28, 417, 671, 861, 1045, 1138
Alw26I GTCTC 2 cut(s) 178, 866
AlwI GGATC 1 cut(s) 1028
AoxI GGCC 2 cut(s) 65, 87
ApeKI GCWGC 3 cut(s) 352, 539, 785
ApoI RAATTY 1 cut(s) 1162
AseI ATTAAT 1 cut(s) 999
AspLEI GCGC 2 cut(s) 357, 790
AspS9I GGNCC 2 cut(s) 87, 112
AsuC2I CCSGG 2 cut(s) 82, 382
AsuHPI GGTGA 2 cut(s) 181, 193
AsuII TTCGAA 1 cut(s) 36
AsuNHI GCTAGC 1 cut(s) 667
AvaII GGWCC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 1185
BbvI GCAGC 3 cut(s) 339, 526, 797
BccI CCATC 2 cut(s) 775, 987
BceAI ACGGC 2 cut(s) 425, 1172
BciT130I CCWGG 6 cut(s) 44, 110, 469, 504, 514, 680
BciVI GTATCC 1 cut(s) 826
BclI TGATCA 4 cut(s) 327, 478, 1063, 1141
BcnI CCSGG 2 cut(s) 82, 382
BcoDI GTCTC 2 cut(s) 178, 866
BfaI CTAG 2 cut(s) 668, 1222
BfmI CTRYAG 1 cut(s) 1007
BfrI CTTAAG 1 cut(s) 272
BfuI GTATCC 1 cut(s) 826
BglI GCCNNNNNGGC 1 cut(s) 86
BisI GCNGC 6 cut(s) 65, 353, 387, 540, 618, 786
BlsI GCNGC 6 cut(s) 66, 354, 388, 541, 619, 787
Bme1390I CCNGG 8 cut(s) 44, 82, 110, 382, 469, 504, 514, 680
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 87, 112
BmiI GGNNCC 2 cut(s) 229, 1075
BmrFI CCNGG 8 cut(s) 44, 82, 110, 382, 469, 504, 514, 680
BmsI GCATC 3 cut(s) 81, 643, 654
BmtI GCTAGC 1 cut(s) 671
BpiI GAAGAC 1 cut(s) 1185
BpmI CTGGAG 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 2 cut(s) 82, 382
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 6 cut(s) 42, 360, 381, 502, 512, 776
Bsc4I CCNNNNNNNGG 3 cut(s) 366, 834, 1174
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 6 cut(s) 44, 110, 469, 504, 514, 680
BseDI CCNNGG 6 cut(s) 42, 360, 381, 502, 512, 776
BseGI GGATG 7 cut(s) 72, 151, 508, 669, 731, 786, 898
BseLI CCNNNNNNNGG 3 cut(s) 366, 834, 1174
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 1 cut(s) 822
BseX3I CGGCCG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 339, 526, 797
Bsh1236I CGCG 1 cut(s) 552
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 67, 89
BsiEI CGRYCG 1 cut(s) 68
BsiSI CCGG 3 cut(s) 82, 381, 410
BsiWI CGTACG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 3 cut(s) 366, 834, 1174
BsmAI GTCTC 2 cut(s) 178, 866
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 1 cut(s) 546
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 2 cut(s) 67, 89
Bsp119I TTCGAA 1 cut(s) 36
Bsp143I GATC 5 cut(s) 327, 478, 1033, 1063, 1141
BspACI CCGC 5 cut(s) 64, 344, 386, 617, 1205
BspANI GGCC 2 cut(s) 67, 89
BspCNI CTCAG 1 cut(s) 823
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 2 cut(s) 229, 1075
BspOI GCTAGC 1 cut(s) 671
BspPI GGATC 1 cut(s) 1028
BspQI GCTCTTC 1 cut(s) 549
BspT104I TTCGAA 1 cut(s) 36
BspTI CTTAAG 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 435
BssECI CCNNGG 6 cut(s) 42, 360, 381, 502, 512, 776
BssMI GATC 5 cut(s) 327, 478, 1033, 1063, 1141
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 2 cut(s) 360, 776
Bst2UI CCWGG 6 cut(s) 44, 110, 469, 504, 514, 680
Bst4CI ACNGT 7 cut(s) 100, 130, 406, 624, 704, 1054, 1184
Bst6I CTCTTC 1 cut(s) 549
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 3 cut(s) 462, 669, 863
BstDEI CTNAG 5 cut(s) 390, 765, 831, 855, 881
BstF5I GGATG 7 cut(s) 72, 151, 508, 669, 731, 786, 898
BstFNI CGCG 1 cut(s) 552
BstHHI GCGC 2 cut(s) 357, 790
BstKTI GATC 5 cut(s) 330, 481, 1036, 1066, 1144
BstMAI GTCTC 2 cut(s) 178, 866
BstMBI GATC 5 cut(s) 327, 478, 1033, 1063, 1141
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 86, 352
BstNI CCWGG 6 cut(s) 44, 110, 469, 504, 514, 680
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 8 cut(s) 42, 80, 108, 380, 467, 502, 512, 678
BstSFI CTRYAG 1 cut(s) 1007
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 3 cut(s) 339, 526, 797
BstV2I GAAGAC 1 cut(s) 1185
BstXI CCANNNNNNTGG 1 cut(s) 986
BstZI CGGCCG 1 cut(s) 65
BsuI GTATCC 1 cut(s) 826
BsuRI GGCC 2 cut(s) 67, 89
BtsCI GGATG 7 cut(s) 72, 151, 508, 669, 731, 786, 898
BtsIMutI CAGTG 2 cut(s) 620, 828
Cac8I GCNNGC 3 cut(s) 462, 669, 863
CciI TCATGA 1 cut(s) 481
CfoI GCGC 2 cut(s) 357, 790
Cfr13I GGNCC 2 cut(s) 87, 112
Csp6I GTAC 2 cut(s) 238, 495
CviAII CATG 7 cut(s) 77, 482, 536, 731, 929, 962, 983
CviQI GTAC 2 cut(s) 238, 495
DdeI CTNAG 5 cut(s) 390, 765, 831, 855, 881
DpnI GATC 5 cut(s) 329, 480, 1035, 1065, 1143
DpnII GATC 5 cut(s) 327, 478, 1033, 1063, 1141
DraIII CACNNNGTG 1 cut(s) 834
EaeI YGGCCR 1 cut(s) 65
EagI CGGCCG 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
EciI GGCGGA 1 cut(s) 333
EclXI CGGCCG 1 cut(s) 65
Eco130I CCWWGG 2 cut(s) 360, 776
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 279, 852
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 6 cut(s) 42, 108, 467, 502, 512, 678
EcoT14I CCWWGG 2 cut(s) 360, 776
EcoT22I ATGCAT 1 cut(s) 658
ErhI CCWWGG 2 cut(s) 360, 776
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 7 cut(s) 80, 485, 539, 734, 932, 965, 986
FaqI GGGAC 1 cut(s) 546
FatI CATG 7 cut(s) 76, 481, 535, 730, 928, 961, 982
FbaI TGATCA 4 cut(s) 327, 478, 1063, 1141
Fnu4HI GCNGC 6 cut(s) 65, 353, 387, 540, 618, 786
FokI GGATG 7 cut(s) 59, 158, 495, 676, 738, 793, 905
Fsp4HI GCNGC 6 cut(s) 65, 353, 387, 540, 618, 786
FspBI CTAG 2 cut(s) 668, 1222
GlaI GCGC 2 cut(s) 356, 789
GluI GCNGC 6 cut(s) 65, 353, 387, 540, 618, 786
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 2 cut(s) 67, 89
HapII CCGG 3 cut(s) 82, 381, 410
HhaI GCGC 2 cut(s) 357, 790
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 7 cut(s) 80, 485, 539, 734, 932, 965, 986
Hin6I GCGC 2 cut(s) 355, 788
HinP1I GCGC 2 cut(s) 355, 788
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 4 cut(s) 38, 578, 877, 1195
HpaII CCGG 3 cut(s) 82, 381, 410
HphI GGTGA 2 cut(s) 181, 193
Hpy166II GTNNAC 3 cut(s) 126, 154, 402
Hpy188I TCNGA 6 cut(s) 96, 259, 583, 871, 1068, 1146
Hpy188III TCNNGA 5 cut(s) 319, 331, 482, 723, 1037
Hpy8I GTNNAC 3 cut(s) 126, 154, 402
Hpy99I CGWCG 2 cut(s) 446, 552
HpyAV CCTTC 9 cut(s) 43, 128, 172, 254, 328, 876, 902, 949, 1126
HpyCH4III ACNGT 7 cut(s) 100, 130, 406, 624, 704, 1054, 1184
HpyCH4IV ACGT 3 cut(s) 150, 156, 497
HpyCH4V TGCA 2 cut(s) 244, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 352
HpyF3I CTNAG 5 cut(s) 390, 765, 831, 855, 881
HpySE526I ACGT 3 cut(s) 150, 156, 497
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 7 cut(s) 80, 485, 539, 734, 932, 965, 986
HspAI GCGC 2 cut(s) 355, 788
Ksp22I TGATCA 4 cut(s) 327, 478, 1063, 1141
Kzo9I GATC 5 cut(s) 327, 478, 1033, 1063, 1141
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 2 cut(s) 227, 1135
Lsp1109I GCAGC 3 cut(s) 339, 526, 797
LweI GCATC 3 cut(s) 81, 643, 654
MaeI CTAG 2 cut(s) 668, 1222
MaeII ACGT 3 cut(s) 150, 156, 497
MaeIII GTNAC 3 cut(s) 454, 624, 1211
MalI GATC 5 cut(s) 329, 480, 1035, 1065, 1143
MboI GATC 5 cut(s) 327, 478, 1033, 1063, 1141
MboII GAAGA 4 cut(s) 406, 536, 662, 1190
MfeI CAATTG 1 cut(s) 232
MluCI AATT 7 cut(s) 232, 607, 715, 918, 996, 1162, 1172
MlyI GAGTC 2 cut(s) 871, 1204
MmeI TCCRAC 3 cut(s) 498, 568, 967
Mph1103I ATGCAT 1 cut(s) 658
MseI TTAA 5 cut(s) 273, 605, 948, 999, 1151
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 3 cut(s) 82, 381, 410
MspR9I CCNGG 8 cut(s) 44, 82, 110, 382, 469, 504, 514, 680
MunI CAATTG 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 6 cut(s) 44, 110, 469, 504, 514, 680
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 86, 352
NciI CCSGG 2 cut(s) 82, 382
NdeII GATC 5 cut(s) 327, 478, 1033, 1063, 1141
NheI GCTAGC 1 cut(s) 667
NlaIII CATG 7 cut(s) 80, 485, 539, 734, 932, 965, 986
NlaIV GGNNCC 2 cut(s) 229, 1075
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 454, 1211
NsiI ATGCAT 1 cut(s) 658
NspI RCATGY 1 cut(s) 539
NspV TTCGAA 1 cut(s) 36
PagI TCATGA 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 549
PctI GAATGC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 38, 578
Pfl23II CGTACG 1 cut(s) 494
PflMI CCANNNNNTGG 2 cut(s) 366, 834
PfoI TCCNGGA 2 cut(s) 108, 678
PkrI GCNGC 6 cut(s) 66, 354, 388, 541, 619, 787
PleI GAGTC 2 cut(s) 871, 1203
PpsI GAGTC 2 cut(s) 871, 1203
PpuMI RGGWCCY 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 999
PsiI TTATAA 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 112
Psp6I CCWGG 6 cut(s) 42, 108, 467, 502, 512, 678
PspGI CCWGG 6 cut(s) 42, 108, 467, 502, 512, 678
PspLI CGTACG 1 cut(s) 494
PspN4I GGNNCC 2 cut(s) 229, 1075
PspPI GGNCC 2 cut(s) 87, 112
PspPPI RGGWCCY 1 cut(s) 112
RsaI GTAC 2 cut(s) 239, 496
RsaNI GTAC 2 cut(s) 238, 495
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 5 cut(s) 273, 605, 948, 999, 1151
SatI GCNGC 6 cut(s) 65, 353, 387, 540, 618, 786
Sau3AI GATC 5 cut(s) 327, 478, 1033, 1063, 1141
Sau96I GGNCC 2 cut(s) 87, 112
SchI GAGTC 2 cut(s) 871, 1204
ScrFI CCNGG 8 cut(s) 44, 82, 110, 382, 469, 504, 514, 680
SfaNI GCATC 3 cut(s) 81, 643, 654
SfcI CTRYAG 1 cut(s) 1007
SfuI TTCGAA 1 cut(s) 36
SinI GGWCC 1 cut(s) 112
SmlI CTYRAG 2 cut(s) 272, 317
SmoI CTYRAG 2 cut(s) 272, 317
Sse9I AATT 7 cut(s) 232, 607, 715, 918, 996, 1162, 1172
SsiI CCGC 5 cut(s) 64, 344, 386, 617, 1205
SspI AATATT 1 cut(s) 1003
SspMI CTAG 2 cut(s) 668, 1222
StyD4I CCNGG 8 cut(s) 42, 80, 108, 380, 467, 502, 512, 678
StyI CCWWGG 2 cut(s) 360, 776
TaaI ACNGT 7 cut(s) 100, 130, 406, 624, 704, 1054, 1184
TaiI ACGT 3 cut(s) 153, 159, 500
TaqI TCGA 5 cut(s) 36, 444, 735, 1097, 1193
TasI AATT 7 cut(s) 232, 607, 715, 918, 996, 1162, 1172
TauI GCSGC 3 cut(s) 67, 389, 620
TfiI GAWTC 2 cut(s) 38, 578
Tru1I TTAA 5 cut(s) 273, 605, 948, 999, 1151
Tru9I TTAA 5 cut(s) 273, 605, 948, 999, 1151
TscAI CASTG 2 cut(s) 627, 835
TseFI GTSAC 2 cut(s) 454, 1211
TseI GCWGC 3 cut(s) 352, 539, 785
Tsp45I GTSAC 2 cut(s) 454, 1211
TspDTI ATGAA 5 cut(s) 558, 653, 917, 968, 1145
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 2 cut(s) 627, 835
Van91I CCANNNNNTGG 2 cut(s) 366, 834
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 1 cut(s) 1162
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 2 cut(s) 668, 1222
ZraI GACGTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.