Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

59107866 .. 59108600

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0459100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAACAACCACTGACCCCAAACTCCAACCCCCAAAAACCCACCAAACCCACAGACCCAAATGCCCTGAAGAAAAAGCTGCCCACCCCACAAGAGCTCATCTCCCACTATGAATCCCAAGGGCTTGACACCCAAGAAGCCTCTCTCAAGGTCATAGGGGACCTCCAGAGTGCCCTGTTTAGGGTCATATCCTCTGGAAGAGGCAGAAAGGACAAGCTTTTGGCTGAGACTTCAAGAAAAGTTGACAACACCAACAACAGCCTTGCCATTCTTAACATGAAGCTTGACTCCAAGCCTGGCTATGGTGAGTCTTTTGCTATTGGGCTTGCTTCTGGGCTCACCTTCCAAGGCGTTCAGAGTGTTCTGCCTCATGTATTCAAGGGTTTTGGAGACATTTGGAATTCTGTCAGGAATGTCGAAAAGGAAAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

144

Amino Acids

15.76

Weight (kDa)

9.19

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	180, 181, 302
AgsI	TTSAA	2 cut(s)	234, 379
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	4 cut(s)	79, 97, 217, 283
AluI	AGCT	4 cut(s)	79, 97, 217, 283
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	2 cut(s)	221, 384
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	317, 331
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	175
BanII	GRGCYC	2 cut(s)	99, 339
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	221, 384
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	118, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 181, 302
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	118, 346
BseLI	CCNNNNNNNGG	3 cut(s)	180, 181, 302
BseMII	CTCAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	180, 181, 302
BsmAI	GTCTC	2 cut(s)	221, 384
BsmFI	GGGAC	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	99, 175, 339
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	118, 346
BssT1I	CCWWGG	2 cut(s)	118, 346
Bst2UI	CCWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	225
BstMAI	GTCTC	2 cut(s)	221, 384
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstSLI	GKGCMC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	160
CviAII	CATG	2 cut(s)	277, 371
DdeI	CTNAG	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	118, 346
Eco24I	GRGCYC	2 cut(s)	99, 339
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	118, 346
EcoT38I	GRGCYC	2 cut(s)	99, 339
ErhI	CCWWGG	2 cut(s)	118, 346
FaeI	CATG	2 cut(s)	280, 374
FaiI	YATR	6 cut(s)	111, 155, 188, 278, 303, 372
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	276, 370
Fnu4HI	GCNGC	1 cut(s)	80
FriOI	GRGCYC	2 cut(s)	99, 339
Fsp4HI	GCNGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	149
Hin1II	CATG	2 cut(s)	280, 374
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	2 cut(s)	215, 281
HinfI	GANTC	3 cut(s)	113, 287, 308
HphI	GGTGA	2 cut(s)	317, 331
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	4 cut(s)	166, 195, 234, 409
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	280, 374
LpnPI	CCDG	8 cut(s)	80, 179, 180, 188, 282, 309, 318, 394
Lsp1109I	GCAGC	1 cut(s)	66
MboII	GAAGA	2 cut(s)	82, 210
MhlI	GDGCHC	3 cut(s)	99, 175, 339
MluCI	AATT	1 cut(s)	400
MlyI	GAGTC	2 cut(s)	281, 317
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	5 cut(s)	151, 173, 194, 202, 378
MseI	TTAA	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
NlaIII	CATG	2 cut(s)	280, 374
NlaIV	GGNNCC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	2 cut(s)	281, 316
PpsI	GAGTC	2 cut(s)	281, 316
PpuMI	RGGWCCY	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	281, 317
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	3 cut(s)	99, 175, 339
SetI	ASST	7 cut(s)	81, 99, 153, 165, 219, 285, 344
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	400
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	2 cut(s)	118, 346
TaqI	TCGA	1 cut(s)	417
TasI	AATT	1 cut(s)	400
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	126, 293
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.