Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003664

Physical Location & Seq

Genomic Coordinates Forward (+)

7887663 .. 7888109

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTTGGGACTCAGAGCAAGAGAGACCTGTCCCTGGAATTCCAATCCCAGATACCAATCCTGAGACCCAGCATCCATGCCAGGAGGGCGAATCTGACAGTAAAATTCCAGGACCTTTATGGGTTTACAGTGGAAGGGAATGTGGACGATGTGAATGTGTTGAATGAGGTGAGGGAGAAGGTGAGGCAGCAGGGGAGGGTATGGTGGTCGTTGGAGGCAAACAAAGGTGCAAATTGGTACCTGCAGACTTCCATTTCTGAAGGGAACTTGAAGTCCTCCCTAAAGTTTTCAGCTTTGGCCAATGCCATCACTCTGAAGAAGCTGATTAGGAAGGGGATTCCGCCGGTGCTCCGCCCCAAGGTGTGGTTTTCGCTGTCCGGGGCGGCCAAGAAGAAGTCCACCGCGCCGGAGAGCTATTACGATGACCTGATCGATCAAGGCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030054 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0031410 GO:0031982 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045296 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0050839 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0097708 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

149

Amino Acids

16.76

Weight (kDa)

9.84

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07890 AT3G07890 AT3G07890 AT3G07890 AT3G07890
fragaria_vesca	FvH4_6g41560
malus_domestica	MD09G1118900.v1.1 MD17G1109700.v1.1
prunus_persica	Prupe.3G205400_v2.0.a1 Prupe.3G205400_v2.0.a1
pyrus_communis	pycom09g04380 pycom17g10190 pycom17g10200
rosa_chinensis	RchiOBHm_Chr2g0094461 RchiOBHm_Chr2g0157241
rosa_laevigata	RLG00000020974
rosa_multiflora	Rmu_co8061220.1_g000001 Rmu_co8315133.1_g000001 Rmu_sc0006282.1_g000005 Rmu_sc0038099.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092380
rosa_rugosa	Rorug02G0459000 Rorug02G0459100
rosa_samantha	Rh2AG092200 Rh2AG092300 Rh2AG524100 Rh2BG092500 Rh2BG538500 Rh2CG095000 Rh2CG508900 Rh2DG091300 Rh2DG547400 Rh7AG484800
rosa_wichuraiana	Rw2G043350 Rw2G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	249
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	237
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccII	CGCG	1 cut(s)	404
AciI	CCGC	4 cut(s)	341, 352, 383, 402
AcoI	YGGCCR	2 cut(s)	297, 384
AcsI	RAATTY	2 cut(s)	38, 104
AcuI	CTGAAG	2 cut(s)	279, 335
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	3 cut(s)	34, 358, 363
AgsI	TTSAA	2 cut(s)	163, 271
AjnI	CCWGG	3 cut(s)	33, 80, 108
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	3 cut(s)	293, 322, 414
AluI	AGCT	3 cut(s)	293, 322, 414
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	2 cut(s)	18, 58
AoxI	GGCC	3 cut(s)	297, 384, 439
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	2 cut(s)	38, 104
Asp718I	GGTACC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	181, 193
AvaII	GGWCC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	3 cut(s)	35, 82, 110
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	2 cut(s)	18, 58
BfmI	CTRYAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	249
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	2 cut(s)	188, 384
BlsI	GCNGC	2 cut(s)	189, 385
Bme1390I	CCNGG	4 cut(s)	35, 82, 110, 379
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	4 cut(s)	35, 82, 110, 379
BmsI	GCATC	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	379
Bsa29I	ATCGAT	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	56
BsaI	GGTCTC	2 cut(s)	18, 58
BsaJI	CCNNGG	3 cut(s)	33, 357, 378
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 358, 363
Bse118I	RCCGGY	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	3 cut(s)	35, 82, 110
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	33, 357, 378
BseGI	GGATG	1 cut(s)	72
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	3 cut(s)	34, 358, 363
BseMII	CTCAG	2 cut(s)	26, 53
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	3 cut(s)	299, 386, 441
BshNI	GGYRCC	1 cut(s)	237
BshVI	ATCGAT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	3 cut(s)	344, 378, 407
BslFI	GGGAC	2 cut(s)	16, 22
BslI	CCNNNNNNNGG	3 cut(s)	34, 358, 363
BsmAI	GTCTC	2 cut(s)	18, 58
BsmFI	GGGAC	2 cut(s)	16, 22
BsnI	GGCC	3 cut(s)	299, 386, 441
Bso31I	GGTCTC	2 cut(s)	18, 58
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	429, 433
BspACI	CCGC	4 cut(s)	341, 352, 383, 402
BspANI	GGCC	3 cut(s)	299, 386, 441
BspCNI	CTCAG	2 cut(s)	25, 54
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	239
BspMAI	CTGCAG	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	237
BspTNI	GGTCTC	2 cut(s)	18, 58
BsrFI	RCCGGY	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	33, 357, 378
BssMI	GATC	2 cut(s)	429, 433
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	3 cut(s)	35, 82, 110
Bst4CI	ACNGT	2 cut(s)	100, 130
BstDEI	CTNAG	2 cut(s)	12, 62
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	2 cut(s)	432, 436
BstMAI	GTCTC	2 cut(s)	18, 58
BstMBI	GATC	2 cut(s)	429, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	3 cut(s)	35, 82, 110
BstSCI	CCNGG	4 cut(s)	33, 80, 108, 377
BstSFI	CTRYAG	1 cut(s)	242
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	299, 386, 441
BsuTUI	ATCGAT	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	135, 442
BveI	ACCTGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	6 cut(s)	293, 299, 322, 386, 414, 441
CviKI_1	RGCY	6 cut(s)	293, 299, 322, 386, 414, 441
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	12, 62
DpnI	GATC	2 cut(s)	431, 435
DpnII	GATC	2 cut(s)	429, 433
EaeI	YGGCCR	2 cut(s)	297, 384
EciI	GGCGGA	2 cut(s)	330, 341
Eco130I	CCWWGG	1 cut(s)	357
Eco31I	GGTCTC	2 cut(s)	18, 58
Eco47I	GGWCC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	279, 335
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	33, 80, 108
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	80
FaiI	YATR	3 cut(s)	78, 120, 202
FaqI	GGGAC	2 cut(s)	16, 22
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	188, 384
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	188, 384
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	2 cut(s)	188, 384
GsaI	CCCAGC	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	299, 386, 441
HapII	CCGG	3 cut(s)	344, 378, 407
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	3 cut(s)	10, 91, 337
HpaII	CCGG	3 cut(s)	344, 378, 407
HphI	GGTGA	2 cut(s)	181, 193
Hpy166II	GTNNAC	3 cut(s)	126, 145, 399
Hpy188I	TCNGA	4 cut(s)	15, 96, 259, 315
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	3 cut(s)	126, 145, 399
HpyAV	CCTTC	4 cut(s)	128, 172, 254, 325
HpyCH4III	ACNGT	2 cut(s)	100, 130
HpyCH4V	TGCA	2 cut(s)	230, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	12, 62
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	404
KpnI	GGTACC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	429, 433
LmnI	GCTCC	1 cut(s)	354
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	81
MalI	GATC	2 cut(s)	431, 435
MboI	GATC	2 cut(s)	429, 433
MboII	GAAGA	2 cut(s)	328, 403
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	3 cut(s)	38, 104, 232
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	78, 160, 165, 177, 189, 208, 286
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	3 cut(s)	344, 378, 407
MspR9I	CCNGG	4 cut(s)	35, 82, 110, 379
MvaI	CCWGG	3 cut(s)	35, 82, 110
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	2 cut(s)	429, 433
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	91, 337
PflMI	CCANNNNNTGG	1 cut(s)	363
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	189, 385
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	3 cut(s)	33, 80, 108
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	3 cut(s)	33, 80, 108
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SatI	GCNGC	2 cut(s)	188, 384
Sau3AI	GATC	2 cut(s)	429, 433
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	4 cut(s)	35, 82, 110, 379
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	242
SgrAI	CRCCGGYG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	3 cut(s)	38, 104, 232
SsiI	CCGC	4 cut(s)	341, 352, 383, 402
StyD4I	CCNGG	4 cut(s)	33, 80, 108, 377
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	100, 130
TaqI	TCGA	1 cut(s)	432
TasI	AATT	3 cut(s)	38, 104, 232
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	2 cut(s)	91, 337
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	1 cut(s)	187
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	38, 104
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.