Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Reverse (-)

2710065 .. 2712042

Gene Structure 1978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGGTCGATTATTACAAGGTTCTTCAGGTGGATCGGAATGCGAAAGACGACGACTTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAGACAAGAACCCTAACAACAAAAAAGACGCCGAAGCCAAATTCAAGCAGATCTCCGAAGCTTACGATGTTTTGAGTGATCCTCAAAAGAGAGCCATCTATGATCAATATGGAGAAGAAGGTCTAACAAGCCAGGCTCCGCCTCCCGGAGCAGGCGGCGGGTTTTCGGATGGAGGGGCTTCGTTCCGGTTCAACGGTAGAAGCGCAGATGATATCTTCTCGGAGTTCTTTGGCTTCACAAGACCATTTGGTGACTCACGTGGTGCAGGTCCCTCTAATGGGTTCCGGTTCGCGGAAGACGTTTTCTCGTCAAATGTTGTTCCACCGAGGAAAGCTGCCCCTATTGAGAGACAACTTCCTTGTAGTTTGGAAGATCTCTACAAAGGAGTCAGTAAGAAGATGAAGATCTCTCGGGACGTCCTCGATTCAAGCGGGAGACCCACAACAGTTGAGGAGATCTTGACGATAGAAATCAAGCCAGGGTGGAAGAAAGGGACGAAGATTACCTTCCCGGAGAAAGGAAACGAGCAGCGAGGAATCATACCATCAGATCTTGTATTCATAGTTGATGAGAAGCCACATGCGGTGTTCAAGCGAGACGGGAATGACCTTGTGATGACACAGAAGATCCCTCTTGTGGAAGCCCTCACGGGATACACTGCTCAGGTCTCGACTCTGGATGGAAGATCAGTAACGGTTCCAATTAACAACGTGATCAGCCCTTCTTATGAAGAGGTGGTGAAAGGTGAAGGCATGCCAATCCCTAAAGACCCATCAAAGAAAGGGAACTTGAGAATCAAGTTCACTGTTAAGTTCCCATCGAGGCTAACAACAGAGCAGAAATCTGGAATCAAACGAATGTTTTCGTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

323

Amino Acids

35.8

Weight (kDa)

9.25

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	1e-27	DnaJ domain
DnaJ_C	PF01556	147 - 305	5.2e-42	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	516
Acc36I	ACCTGC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccII	CGCG	1 cut(s)	389
AciI	CCGC	6 cut(s)	236, 252, 255, 389, 528, 680
AclWI	GGATC	3 cut(s)	42, 170, 718
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	11
AcvI	CACGTG	1 cut(s)	356
AcyI	GRCGYC	2 cut(s)	126, 513
AdeI	CACNNNGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	8 cut(s)	90, 242, 248, 374, 375, 388, 614, 733
AgsI	TTSAA	5 cut(s)	61, 142, 289, 525, 688
AjnI	CCWGG	2 cut(s)	228, 574
AluBI	AGCT	3 cut(s)	68, 158, 431
AluI	AGCT	3 cut(s)	68, 158, 431
Alw26I	GTCTC	4 cut(s)	439, 526, 687, 769
AlwI	GGATC	3 cut(s)	42, 170, 718
Ama87I	CYCGRG	1 cut(s)	507
ApeKI	GCWGC	2 cut(s)	431, 625
ApoI	RAATTY	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	958
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	2 cut(s)	243, 608
AsuHPI	GGTGA	3 cut(s)	359, 847, 854
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	399, 957
BbvI	GCAGC	2 cut(s)	418, 637
BccI	CCATC	6 cut(s)	200, 260, 649, 770, 877, 922
BciT130I	CCWGG	2 cut(s)	230, 576
BciVI	GTATCC	1 cut(s)	743
BclI	TGATCA	2 cut(s)	199, 810
BcnI	CCSGG	2 cut(s)	243, 608
BcoDI	GTCTC	4 cut(s)	439, 526, 687, 769
BfaI	CTAG	1 cut(s)	970
BfuAI	ACCTGC	1 cut(s)	353
BfuI	GTATCC	1 cut(s)	743
BglII	AGATCT	5 cut(s)	147, 469, 501, 552, 646
BisI	GCNGC	3 cut(s)	253, 432, 626
BlsI	GCNGC	3 cut(s)	254, 433, 627
Bme1390I	CCNGG	4 cut(s)	230, 243, 576, 608
Bme18I	GGWCC	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	4 cut(s)	234, 367, 380, 795
BmrFI	CCNGG	4 cut(s)	230, 243, 576, 608
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	399, 957
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
Bpu10I	CCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	1 cut(s)	907
BpuMI	CCSGG	2 cut(s)	243, 608
BsaAI	YACGTR	1 cut(s)	356
BsaBI	GATNNNNATC	2 cut(s)	500, 566
BsaHI	GRCGYC	2 cut(s)	126, 513
BsaI	GGTCTC	2 cut(s)	526, 769
BsaJI	CCNNGG	2 cut(s)	422, 575
BsaWI	WCCGGW	2 cut(s)	282, 381
Bsc4I	CCNNNNNNNGG	8 cut(s)	90, 242, 248, 374, 375, 388, 614, 733
Bse8I	GATNNNNATC	2 cut(s)	500, 566
BseBI	CCWGG	2 cut(s)	230, 576
BseDI	CCNNGG	2 cut(s)	422, 575
BseGI	GGATG	3 cut(s)	94, 271, 781
BseJI	GATNNNNATC	2 cut(s)	500, 566
BseLI	CCNNNNNNNGG	8 cut(s)	90, 242, 248, 374, 375, 388, 614, 733
BseMII	CTCAG	1 cut(s)	773
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	2 cut(s)	418, 637
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	4 cut(s)	243, 283, 382, 608
BslFI	GGGAC	3 cut(s)	351, 524, 604
BslI	CCNNNNNNNGG	8 cut(s)	90, 242, 248, 374, 375, 388, 614, 733
BsmAI	GTCTC	4 cut(s)	439, 526, 687, 769
BsmBI	CGTCTC	1 cut(s)	687
BsmFI	GGGAC	3 cut(s)	351, 524, 604
BsmI	GAATGC	1 cut(s)	46
Bso31I	GGTCTC	2 cut(s)	526, 769
BsoBI	CYCGRG	1 cut(s)	507
BspACI	CCGC	6 cut(s)	236, 252, 255, 389, 528, 680
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	4 cut(s)	234, 367, 380, 795
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	3 cut(s)	42, 170, 718
BspTNI	GGTCTC	2 cut(s)	526, 769
BssECI	CCNNGG	2 cut(s)	422, 575
BssNI	GRCGYC	2 cut(s)	126, 513
Bst2UI	CCWGG	2 cut(s)	230, 576
Bst4CI	ACNGT	4 cut(s)	293, 544, 793, 904
Bst6I	CTCTTC	1 cut(s)	822
BstACI	GRCGYC	2 cut(s)	126, 513
BstBAI	YACGTR	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	250, 851
BstDEI	CTNAG	1 cut(s)	759
BstF5I	GGATG	3 cut(s)	94, 271, 781
BstFNI	CGCG	1 cut(s)	389
BstHHI	GCGC	1 cut(s)	302
BstMAI	GTCTC	4 cut(s)	439, 526, 687, 769
BstNI	CCWGG	2 cut(s)	230, 576
BstNSI	RCATGY	2 cut(s)	680, 853
BstSCI	CCNGG	4 cut(s)	228, 241, 574, 606
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	2 cut(s)	418, 637
BstV2I	GAAGAC	2 cut(s)	399, 957
BstX2I	RGATCY	6 cut(s)	147, 469, 501, 552, 646, 723
BstYI	RGATCY	6 cut(s)	147, 469, 501, 552, 646, 723
BsuI	GTATCC	1 cut(s)	743
BtsCI	GGATG	3 cut(s)	94, 271, 781
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	2 cut(s)	753, 900
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	2 cut(s)	250, 851
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	134
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	3 cut(s)	85, 677, 850
DdeI	CTNAG	1 cut(s)	759
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
EciI	GGCGGA	1 cut(s)	225
Eco31I	GGTCTC	2 cut(s)	526, 769
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	11
Eco72I	CACGTG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	228, 574
EcoRV	GATATC	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	687
FaeI	CATG	3 cut(s)	88, 680, 853
FaiI	YATR	8 cut(s)	86, 198, 207, 638, 659, 678, 825, 851
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	3 cut(s)	351, 524, 604
FatI	CATG	3 cut(s)	84, 676, 849
FauI	CCCGC	2 cut(s)	248, 521
FbaI	TGATCA	2 cut(s)	199, 810
Fnu4HI	GCNGC	3 cut(s)	253, 432, 626
FokI	GGATG	3 cut(s)	81, 278, 788
Fsp4HI	GCNGC	3 cut(s)	253, 432, 626
FspBI	CTAG	1 cut(s)	970
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	3 cut(s)	253, 432, 626
HapII	CCGG	4 cut(s)	243, 283, 382, 608
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	2 cut(s)	126, 513
Hin1II	CATG	3 cut(s)	88, 680, 853
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HindIII	AAGCTT	2 cut(s)	66, 156
HinfI	GANTC	7 cut(s)	350, 483, 521, 633, 769, 891, 945
HpaII	CCGG	4 cut(s)	243, 283, 382, 608
HphI	GGTGA	3 cut(s)	359, 847, 854
Hpy166II	GTNNAC	1 cut(s)	900
Hpy188I	TCNGA	5 cut(s)	39, 154, 265, 319, 646
Hpy188III	TCNNGA	6 cut(s)	98, 509, 556, 766, 773, 942
Hpy8I	GTNNAC	1 cut(s)	900
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	209, 613, 828, 839
HpyCH4III	ACNGT	4 cut(s)	293, 544, 793, 904
HpyCH4IV	ACGT	4 cut(s)	355, 396, 513, 807
HpyCH4V	TGCA	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	759
HpySE526I	ACGT	4 cut(s)	355, 396, 513, 807
Hsp92I	GRCGYC	2 cut(s)	126, 513
Hsp92II	CATG	3 cut(s)	88, 680, 853
HspAI	GCGC	1 cut(s)	300
Ksp22I	TGATCA	2 cut(s)	199, 810
LmnI	GCTCC	2 cut(s)	238, 245
Lsp1109I	GCAGC	2 cut(s)	418, 637
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	970
MaeII	ACGT	4 cut(s)	355, 396, 513, 807
MaeIII	GTNAC	2 cut(s)	347, 787
MflI	RGATCY	6 cut(s)	147, 469, 501, 552, 646, 723
MluCI	AATT	2 cut(s)	137, 798
MlyI	GAGTC	3 cut(s)	344, 492, 763
MroXI	GAANNNNTTC	1 cut(s)	958
MseI	TTAA	2 cut(s)	801, 906
MspI	CCGG	4 cut(s)	243, 283, 382, 608
MspR9I	CCNGG	4 cut(s)	230, 243, 576, 608
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	2 cut(s)	230, 576
MvnI	CGCG	1 cut(s)	389
NciI	CCSGG	2 cut(s)	243, 608
NlaIII	CATG	3 cut(s)	88, 680, 853
NlaIV	GGNNCC	4 cut(s)	234, 367, 380, 795
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	2 cut(s)	680, 853
PaeI	GCATGC	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	958
PfeI	GAWTC	4 cut(s)	521, 633, 891, 945
PflMI	CCANNNNNTGG	1 cut(s)	90
PfoI	TCCNGGA	2 cut(s)	241, 606
PkrI	GCNGC	3 cut(s)	254, 433, 627
PleI	GAGTC	3 cut(s)	344, 491, 763
PmaCI	CACGTG	1 cut(s)	356
PmlI	CACGTG	1 cut(s)	356
PpsI	GAGTC	3 cut(s)	344, 491, 763
Ppu21I	YACGTR	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	228, 574
PspCI	CACGTG	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	228, 574
PspN4I	GGNNCC	4 cut(s)	234, 367, 380, 795
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
PsuI	RGATCY	6 cut(s)	147, 469, 501, 552, 646, 723
SaqAI	TTAA	2 cut(s)	801, 906
SatI	GCNGC	3 cut(s)	253, 432, 626
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	3 cut(s)	344, 492, 763
ScrFI	CCNGG	4 cut(s)	230, 243, 576, 608
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	886
SmoI	CTYRAG	1 cut(s)	886
SphI	GCATGC	1 cut(s)	853
Sse9I	AATT	2 cut(s)	137, 798
SsiI	CCGC	6 cut(s)	236, 252, 255, 389, 528, 680
SspMI	CTAG	1 cut(s)	970
StyD4I	CCNGG	4 cut(s)	228, 241, 574, 606
TaaI	ACNGT	4 cut(s)	293, 544, 793, 904
TaiI	ACGT	4 cut(s)	358, 399, 516, 810
TaqI	TCGA	4 cut(s)	9, 519, 767, 917
TasI	AATT	2 cut(s)	137, 798
TauI	GCSGC	1 cut(s)	255
TfiI	GAWTC	4 cut(s)	521, 633, 891, 945
Tru1I	TTAA	2 cut(s)	801, 906
Tru9I	TTAA	2 cut(s)	801, 906
TscAI	CASTG	2 cut(s)	760, 907
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	2 cut(s)	431, 625
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	4 cut(s)	101, 512, 646, 840
TspRI	CASTG	2 cut(s)	760, 907
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	2 cut(s)	680, 853
XmnI	GAANNNNTTC	1 cut(s)	958
XspI	CTAG	1 cut(s)	970
ZraI	GACGTC	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.