Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

26094270 .. 26096076

Gene Structure 1807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G278000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGGCGCCGATTACTATAAGATTCTTCAAGTACCACGAAACGCCAGTGAAGTTGACTTGAAGGAAGCTGCCGAGGCCAAATTCAACCAACTCTGCCAAGCCTACGACGTTTTGAGCGATCCTCGAAAGCGAGCAGTGTACGATCAGTACGGCGAGGAGGGTTTGAGTGGAGGGTCAAGGCCGGGCGGGTCTCGGAGCCCAGAAGATATATTCGCGGAGTTTTTTGGAGGGAGAGGCGGCGGCATGGGCCAGTCACGGGATGACGGGTTTCGGGACCCGGACGATGTGTTCTCCGACTTTTTTGGACAGAGGGTTAACATGGGCGAGTCACGGGCCGGTGGTTCTCGGTCTCGGAGCCCCGAAATCAGGAGTATGAATGGCGAAAATATATTCGAGTCGCTTATAGCCGCAGCGGAGGGCAATGGTCGGCAGAGGAAAGCAGCGGCGATAAAGAGGACATTGCCTTGCAGCTTGGAGGAGTTGTACATGGGCAACACCAGAAAGATAAAGATTTCTAAGGATGTTGTTGGTGCTAGTGGAAGAAGAAGCACAGTGGAGGAAGTTGTAAATATTGAGATCAAGCCTGGTTGGAAAAAGGACACCAAAATCACTTTCCCAGAGAAAGGGCATGATGTAGAGCGAGGTGTTATACCAGCCGACATCATCTTTATCATTGAGGAGAAGCCTCATAGTTTTTTCAAGAGGGATGGGGATGATCTCGTTGTCACTCAGAACATTTCTCTTGCGGACGCTCTGACAGGACACACAGCGCTGATGACAACGCTTGACGGGAGAAATCTGCGGGTCTCCATTGATTCGATCATCGGTCCCACCCACGAAGAAGTGGTTAAAGGGGAAGGAATGCCTATCCAGAAGGAACAAGGCAAAAAGGGTAACTTGATTCTCAAGTTTAACATCAGGATCCCCAAGCTTACCTCAGAGCAGAAAACTAGCATCAAACAATTGTTAACATCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

327

Amino Acids

35.9

Weight (kDa)

6.94

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	215
AciI	CCGC	9 cut(s)	186, 215, 237, 240, 408, 413, 443, 746, 802
AclWI	GGATC	3 cut(s)	113, 916, 929
AcsI	RAATTY	1 cut(s)	80
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	4 cut(s)	33, 140, 149, 485
AfeI	AGCGCT	1 cut(s)	771
AfiI	CCNNNNNNNGG	3 cut(s)	256, 366, 623
AgsI	TTSAA	4 cut(s)	29, 61, 85, 700
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	3 cut(s)	68, 471, 931
AluI	AGCT	3 cut(s)	68, 471, 931
Alw26I	GTCTC	3 cut(s)	195, 354, 811
AlwI	GGATC	3 cut(s)	113, 916, 929
Aor51HI	AGCGCT	1 cut(s)	771
AoxI	GGCC	4 cut(s)	75, 179, 247, 333
ApeKI	GCWGC	4 cut(s)	68, 410, 440, 468
ApoI	RAATTY	1 cut(s)	80
AspLEI	GCGC	2 cut(s)	8, 772
AspS9I	GGNCC	4 cut(s)	247, 274, 333, 827
AsuC2I	CCSGG	2 cut(s)	183, 278
AvaII	GGWCC	2 cut(s)	274, 827
BamHI	GGATCC	1 cut(s)	921
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	200, 359
BbvI	GCAGC	4 cut(s)	55, 422, 452, 480
BccI	CCATC	1 cut(s)	701
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	585
BcnI	CCSGG	2 cut(s)	183, 278
BcoDI	GTCTC	3 cut(s)	195, 354, 811
BfaI	CTAG	2 cut(s)	534, 951
BfoI	RGCGCY	2 cut(s)	9, 773
BisI	GCNGC	8 cut(s)	69, 238, 241, 408, 411, 441, 444, 469
BlsI	GCNGC	8 cut(s)	70, 239, 242, 409, 412, 442, 445, 470
Bme1390I	CCNGG	3 cut(s)	183, 278, 585
Bme18I	GGWCC	2 cut(s)	274, 827
BmgT120I	GGNCC	4 cut(s)	247, 274, 333, 827
BmiI	GGNNCC	7 cut(s)	7, 197, 275, 276, 356, 829, 923
BmrFI	CCNGG	3 cut(s)	183, 278, 585
BmsI	GCATC	1 cut(s)	963
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpuEI	CTTGAG	1 cut(s)	890
BpuMI	CCSGG	2 cut(s)	183, 278
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	3 cut(s)	195, 354, 811
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 366, 623
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	45, 250
Bse3DI	GCAATG	2 cut(s)	427, 458
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	4 cut(s)	265, 526, 712, 718
BseLI	CCNNNNNNNGG	3 cut(s)	256, 366, 623
BseMI	GCAATG	2 cut(s)	427, 458
BseMII	CTCAG	2 cut(s)	743, 951
BseNI	ACTGG	2 cut(s)	45, 250
BseRI	GAGGAG	3 cut(s)	170, 491, 692
BseXI	GCAGC	4 cut(s)	55, 422, 452, 480
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	4 cut(s)	77, 181, 249, 335
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	182, 278, 336
BslFI	GGGAC	2 cut(s)	287, 813
BslI	CCNNNNNNNGG	3 cut(s)	256, 366, 623
BsmAI	GTCTC	3 cut(s)	195, 354, 811
BsmFI	GGGAC	2 cut(s)	287, 813
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	4 cut(s)	77, 181, 249, 335
Bso31I	GGTCTC	3 cut(s)	195, 354, 811
Bsp1286I	GDGCHC	2 cut(s)	200, 359
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	6 cut(s)	118, 142, 576, 715, 819, 921
BspACI	CCGC	9 cut(s)	186, 215, 237, 240, 408, 413, 443, 746, 802
BspANI	GGCC	4 cut(s)	77, 181, 249, 335
BspCNI	CTCAG	2 cut(s)	742, 950
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	7 cut(s)	7, 197, 275, 276, 356, 829, 923
BspPI	GGATC	3 cut(s)	113, 916, 929
BspT107I	GGYRCC	1 cut(s)	5
BspTNI	GGTCTC	3 cut(s)	195, 354, 811
BsrDI	GCAATG	2 cut(s)	427, 458
BsrFI	RCCGGY	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	45, 250
BssAI	RCCGGY	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	6 cut(s)	118, 142, 576, 715, 819, 921
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	553
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	516, 729, 937
BstF5I	GGATG	4 cut(s)	265, 526, 712, 718
BstFNI	CGCG	1 cut(s)	215
BstH2I	RGCGCY	2 cut(s)	9, 773
BstHHI	GCGC	2 cut(s)	8, 772
BstKTI	GATC	6 cut(s)	121, 145, 579, 718, 822, 924
BstMAI	GTCTC	3 cut(s)	195, 354, 811
BstMBI	GATC	6 cut(s)	118, 142, 576, 715, 819, 921
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 246
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	3 cut(s)	181, 276, 583
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	4 cut(s)	55, 422, 452, 480
BstX2I	RGATCY	1 cut(s)	921
BstYI	RGATCY	1 cut(s)	921
BsuRI	GGCC	4 cut(s)	77, 181, 249, 335
BtsCI	GGATG	4 cut(s)	265, 526, 712, 718
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	3 cut(s)	52, 141, 558
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	8, 772
Cfr10I	RCCGGY	1 cut(s)	335
Cfr13I	GGNCC	4 cut(s)	247, 274, 333, 827
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	4 cut(s)	32, 139, 148, 484
CviAII	CATG	4 cut(s)	244, 319, 487, 629
CviQI	GTAC	4 cut(s)	32, 139, 148, 484
DdeI	CTNAG	3 cut(s)	516, 729, 937
DinI	GGCGCC	1 cut(s)	7
DpnI	GATC	6 cut(s)	120, 144, 578, 717, 821, 923
DpnII	GATC	6 cut(s)	118, 142, 576, 715, 819, 921
Eco24I	GRGCYC	2 cut(s)	200, 359
Eco31I	GGTCTC	3 cut(s)	195, 354, 811
Eco47I	GGWCC	2 cut(s)	274, 827
Eco47III	AGCGCT	1 cut(s)	771
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	583
EcoT38I	GRGCYC	2 cut(s)	200, 359
EgeI	GGCGCC	1 cut(s)	7
EheI	GGCGCC	1 cut(s)	7
FaeI	CATG	4 cut(s)	247, 322, 490, 632
FalI	AAGNNNNNCTT	2 cut(s)	881, 913
FaqI	GGGAC	2 cut(s)	287, 813
FatI	CATG	4 cut(s)	243, 318, 486, 628
FauI	CCCGC	2 cut(s)	179, 795
Fnu4HI	GCNGC	8 cut(s)	69, 238, 241, 408, 411, 441, 444, 469
FokI	GGATG	4 cut(s)	272, 533, 719, 725
FriOI	GRGCYC	2 cut(s)	200, 359
Fsp4HI	GCNGC	8 cut(s)	69, 238, 241, 408, 411, 441, 444, 469
FspBI	CTAG	2 cut(s)	534, 951
GlaI	GCGC	2 cut(s)	7, 771
GluI	GCNGC	8 cut(s)	69, 238, 241, 408, 411, 441, 444, 469
HaeII	RGCGCY	2 cut(s)	9, 773
HaeIII	GGCC	4 cut(s)	77, 181, 249, 335
HapII	CCGG	3 cut(s)	182, 278, 336
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	2 cut(s)	8, 772
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	247, 322, 490, 632
Hin6I	GCGC	2 cut(s)	6, 770
HinP1I	GCGC	2 cut(s)	6, 770
HincII	GTYRAC	3 cut(s)	55, 316, 969
HindII	GTYRAC	3 cut(s)	55, 316, 969
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	5 cut(s)	22, 326, 395, 815, 901
HpaI	GTTAAC	2 cut(s)	316, 969
HpaII	CCGG	3 cut(s)	182, 278, 336
Hpy166II	GTNNAC	4 cut(s)	55, 139, 316, 969
Hpy188I	TCNGA	6 cut(s)	195, 295, 354, 732, 756, 940
Hpy188III	TCNNGA	5 cut(s)	272, 367, 700, 871, 919
Hpy8I	GTNNAC	4 cut(s)	55, 139, 316, 969
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	55, 851, 868
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 246
HpyF3I	CTNAG	3 cut(s)	516, 729, 937
HpySE526I	ACGT	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	247, 322, 490, 632
HspAI	GCGC	2 cut(s)	6, 770
KasI	GGCGCC	1 cut(s)	5
KflI	GGGWCCC	1 cut(s)	274
KspAI	GTTAAC	2 cut(s)	316, 969
Kzo9I	GATC	6 cut(s)	118, 142, 576, 715, 819, 921
LmnI	GCTCC	2 cut(s)	195, 354
Lsp1109I	GCAGC	4 cut(s)	55, 422, 452, 480
LweI	GCATC	1 cut(s)	963
MaeI	CTAG	2 cut(s)	534, 951
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	4 cut(s)	252, 327, 724, 893
MalI	GATC	6 cut(s)	120, 144, 578, 717, 821, 923
MboI	GATC	6 cut(s)	118, 142, 576, 715, 819, 921
MboII	GAAGA	5 cut(s)	17, 215, 552, 555, 851
MfeI	CAATTG	1 cut(s)	962
MflI	RGATCY	1 cut(s)	921
MhlI	GDGCHC	2 cut(s)	200, 359
MluCI	AATT	2 cut(s)	80, 962
Mly113I	GGCGCC	1 cut(s)	6
MlyI	GAGTC	2 cut(s)	335, 404
MmeI	TCCRAC	2 cut(s)	318, 569
MseI	TTAA	4 cut(s)	315, 849, 912, 968
MspA1I	CMGCKG	2 cut(s)	413, 443
MspI	CCGG	3 cut(s)	182, 278, 336
MspR9I	CCNGG	3 cut(s)	183, 278, 585
MunI	CAATTG	1 cut(s)	962
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	74, 246
NarI	GGCGCC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	183, 278
NdeII	GATC	6 cut(s)	118, 142, 576, 715, 819, 921
NlaIII	CATG	4 cut(s)	247, 322, 490, 632
NlaIV	GGNNCC	7 cut(s)	7, 197, 275, 276, 356, 829, 923
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	3 cut(s)	252, 327, 724
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	867
PfeI	GAWTC	3 cut(s)	22, 815, 901
PkrI	GCNGC	8 cut(s)	70, 239, 242, 409, 412, 442, 445, 470
PleI	GAGTC	2 cut(s)	334, 403
PluTI	GGCGCC	1 cut(s)	9
PpsI	GAGTC	2 cut(s)	334, 403
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	7 cut(s)	7, 197, 275, 276, 356, 829, 923
PspPI	GGNCC	4 cut(s)	247, 274, 333, 827
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	921
RsaI	GTAC	4 cut(s)	33, 140, 149, 485
RsaNI	GTAC	4 cut(s)	32, 139, 148, 484
SaqAI	TTAA	4 cut(s)	315, 849, 912, 968
SatI	GCNGC	8 cut(s)	69, 238, 241, 408, 411, 441, 444, 469
Sau3AI	GATC	6 cut(s)	118, 142, 576, 715, 819, 921
Sau96I	GGNCC	4 cut(s)	247, 274, 333, 827
SchI	GAGTC	2 cut(s)	335, 404
ScrFI	CCNGG	3 cut(s)	183, 278, 585
SduI	GDGCHC	2 cut(s)	200, 359
SetI	ASST	6 cut(s)	70, 111, 473, 646, 933, 938
SfaNI	GCATC	1 cut(s)	963
SfoI	GGCGCC	1 cut(s)	7
SinI	GGWCC	2 cut(s)	274, 827
SmlI	CTYRAG	1 cut(s)	905
SmoI	CTYRAG	1 cut(s)	905
Sse9I	AATT	2 cut(s)	80, 962
SsiI	CCGC	9 cut(s)	186, 215, 237, 240, 408, 413, 443, 746, 802
SspDI	GGCGCC	1 cut(s)	5
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	2 cut(s)	534, 951
StyD4I	CCNGG	3 cut(s)	181, 276, 583
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	124, 393, 818
TaqII	GACCGA	2 cut(s)	336, 815
TasI	AATT	2 cut(s)	80, 962
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	4 cut(s)	240, 243, 410, 446
TfiI	GAWTC	3 cut(s)	22, 815, 901
Tru1I	TTAA	4 cut(s)	315, 849, 912, 968
Tru9I	TTAA	4 cut(s)	315, 849, 912, 968
TscAI	CASTG	3 cut(s)	52, 141, 558
TseFI	GTSAC	3 cut(s)	252, 327, 724
TseI	GCWGC	4 cut(s)	68, 410, 440, 468
Tsp45I	GTSAC	3 cut(s)	252, 327, 724
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	3 cut(s)	52, 141, 558
VpaK11BI	GGWCC	2 cut(s)	274, 827
XapI	RAATTY	1 cut(s)	80
XspI	CTAG	2 cut(s)	534, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.