Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Reverse (-)

6818675 .. 6822376

Gene Structure 3702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11390.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGCGTGGATTACTACAAGGTGCTCCAAGTAGAACGCAATGCCAAAGACGACGACTTGAAGAAAGCCTACCGCAAGCTCGCCATGAAATGGCACCCCGATAAAAACCCTAACAACAAGAAAGCCGCCGAGGCCAAATTCAAGCAAATCTCCGAAGCCTACGATGTTTTGAGTGATCCGCAAAAGCGAGCGGTGTACGATCAGTACGGCGAGGAGGGTTTGAAGGCAGGCGCGCCGCCGCCGGATTCAGGGTTTTCTTCCGGCGCGCACGACGGCGGTCCGACTATGTTCCGGTTTAATACTCGGAATCCGGATGATATATTTTCCGAGTTTTTCGGGTTTTCGGGGTTCGGGCAAGGGATGCCGGATATGAGCCGGGCGGGCGGGTCAAGACCGGGCGGGTCGGCGTTTCAGAGGAGCATGTTTGGGGAGGATATATTTTCTCAATTTAGAGGCGCAGGTGAGCCCTCAGCGAGTGCGCCCCGGAAAGCCCAGCCCATTGAGAGGACATTGCCCTGTACTCTGGAGGACTTGTATAAGGGCACCACCAAGAAGATGAAGATTTCCAGGGATGTTGCTGATTCTAGTGGGAGATCAACCACGGTCGAGGAAATTCTCACAATTGAGATCAAGCCAGGTTGGAAGAAAGGCACAAAAATCACTTTCCCAGAGAAGGGAAATGAGCAGCGAGGTGTTATACCAGCAGACCTTGTCTTTATTATTGATGAGAAACCTCATACTCTTTTCAAGAGGGATGGAAATGATCTTATTGTCACTCAGAAGATATCTCTTGCGGAAGCTCTGACAGGTCACACTGCACAGCTGACAACCCTGGATGGGAGAAGTCTCACAGTCACTATCAATTCCATTATCAGCCCCACCTATGAAGAAGTGGTGAAAGGGGAGGGAATGCCAATCCCCAAGGAACCTTCCAAAAGGGGGAATTTAAGAGTCAAGTTCAACATCAAGTTCCCTACCAAGCTTACCTCAGAGCAGAAAGCCGGTATAAAAAAGTTATTAACGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

343

Amino Acids

37.73

Weight (kDa)

9.31

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	72 - 230	1.2e-43	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	2 cut(s)	93, 542
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	191
AccII	CGCG	2 cut(s)	233, 266
AccIII	TCCGGA	1 cut(s)	310
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	3 cut(s)	137, 612, 943
AfaI	GTAC	3 cut(s)	197, 206, 520
AfiI	CCNNNNNNNGG	7 cut(s)	90, 248, 504, 673, 674, 837, 939
AgsI	TTSAA	5 cut(s)	61, 142, 223, 748, 961
AjnI	CCWGG	3 cut(s)	566, 634, 831
AluBI	AGCT	4 cut(s)	79, 800, 823, 982
AluI	AGCT	4 cut(s)	79, 800, 823, 982
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	851
AlwI	GGATC	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	3 cut(s)	137, 612, 943
AscI	GGCGCGCC	1 cut(s)	231
AspLEI	GCGC	6 cut(s)	233, 235, 266, 268, 458, 481
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	3 cut(s)	377, 396, 484
AsuHPI	GGTGA	2 cut(s)	473, 907
AvaII	GGWCC	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	545
BanI	GGYRCC	2 cut(s)	93, 542
BanII	GRGCYC	1 cut(s)	468
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	2 cut(s)	749, 830
BceAI	ACGGC	2 cut(s)	223, 289
BciT130I	CCWGG	3 cut(s)	568, 636, 833
BcnI	CCSGG	3 cut(s)	377, 396, 484
BcoDI	GTCTC	1 cut(s)	851
BfaI	CTAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	449
BglI	GCCNNNNNGGC	2 cut(s)	131, 381
BisI	GCNGC	4 cut(s)	126, 236, 239, 686
BlsI	GCNGC	4 cut(s)	127, 237, 240, 687
Bme1390I	CCNGG	6 cut(s)	377, 396, 484, 568, 636, 833
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	3 cut(s)	95, 544, 927
BmrFI	CCNGG	6 cut(s)	377, 396, 484, 568, 636, 833
BmsI	GCATC	1 cut(s)	351
BoxI	GACNNNNGTC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	469
BpuMI	CCSGG	3 cut(s)	377, 396, 484
BsaJI	CCNNGG	6 cut(s)	129, 482, 567, 600, 831, 921
BsaWI	WCCGGW	2 cut(s)	291, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	7 cut(s)	90, 248, 504, 673, 674, 837, 939
Bse118I	RCCGGY	1 cut(s)	1001
Bse3DI	GCAATG	2 cut(s)	46, 509
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	3 cut(s)	568, 636, 833
BseDI	CCNNGG	6 cut(s)	129, 482, 567, 600, 831, 921
BseGI	GGATG	5 cut(s)	319, 366, 577, 760, 841
BseLI	CCNNNNNNNGG	7 cut(s)	90, 248, 504, 673, 674, 837, 939
BseMI	GCAATG	2 cut(s)	46, 509
BseMII	CTCAG	3 cut(s)	483, 791, 1002
BsePI	GCGCGC	2 cut(s)	231, 264
BseRI	GAGGAG	2 cut(s)	227, 430
BseSI	GKGCMC	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	697
BseYI	CCCAGC	1 cut(s)	492
BsgI	GTGCAG	1 cut(s)	801
Bsh1236I	CGCG	2 cut(s)	233, 266
Bsh1285I	CGRYCG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	2 cut(s)	93, 542
BsiEI	CGRYCG	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	9 cut(s)	242, 261, 292, 311, 365, 376, 395, 484, 1002
BslI	CCNNNNNNNGG	7 cut(s)	90, 248, 504, 673, 674, 837, 939
BsmAI	GTCTC	1 cut(s)	851
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	27, 468, 545
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	175, 199, 593, 627, 763
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	3 cut(s)	482, 790, 1001
BspEI	TCCGGA	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	233, 266
BspLI	GGNNCC	3 cut(s)	95, 544, 927
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	2 cut(s)	93, 542
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	2 cut(s)	46, 509
BsrFI	RCCGGY	1 cut(s)	1001
BssAI	RCCGGY	1 cut(s)	1001
BssECI	CCNNGG	6 cut(s)	129, 482, 567, 600, 831, 921
BssHII	GCGCGC	2 cut(s)	231, 264
BssMI	GATC	5 cut(s)	175, 199, 593, 627, 763
BssT1I	CCWWGG	1 cut(s)	921
Bst2UI	CCWGG	3 cut(s)	568, 636, 833
Bst4CI	ACNGT	2 cut(s)	604, 853
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	7 cut(s)	77, 81, 189, 229, 233, 266, 382
BstDEI	CTNAG	3 cut(s)	469, 777, 988
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	5 cut(s)	319, 366, 577, 760, 841
BstFNI	CGCG	2 cut(s)	233, 266
BstHHI	GCGC	6 cut(s)	233, 235, 266, 268, 458, 481
BstKTI	GATC	5 cut(s)	178, 202, 596, 630, 766
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	5 cut(s)	175, 199, 593, 627, 763
BstMCI	CGRYCG	1 cut(s)	606
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 361, 381
BstNI	CCWGG	3 cut(s)	568, 636, 833
BstNSI	RCATGY	1 cut(s)	424
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	6 cut(s)	375, 394, 482, 566, 634, 831
BstSLI	GKGCMC	1 cut(s)	545
BstUI	CGCG	2 cut(s)	233, 266
BstV1I	GCAGC	1 cut(s)	697
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	5 cut(s)	319, 366, 577, 760, 841
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	813
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	7 cut(s)	77, 81, 189, 229, 233, 266, 382
CfoI	GCGC	6 cut(s)	233, 235, 266, 268, 458, 481
Cfr10I	RCCGGY	1 cut(s)	1001
Cfr13I	GGNCC	1 cut(s)	278
CpoI	CGGWCCG	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	196, 205, 519
CspI	CGGWCCG	1 cut(s)	278
CviAII	CATG	2 cut(s)	85, 421
CviQI	GTAC	3 cut(s)	196, 205, 519
DdeI	CTNAG	3 cut(s)	469, 777, 988
DpnI	GATC	5 cut(s)	177, 201, 595, 629, 765
DpnII	GATC	5 cut(s)	175, 199, 593, 627, 763
Eco130I	CCWWGG	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	278
EcoRII	CCWGG	3 cut(s)	566, 634, 831
EcoRV	GATATC	1 cut(s)	786
EcoT14I	CCWWGG	1 cut(s)	921
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	2 cut(s)	88, 424
FatI	CATG	2 cut(s)	84, 420
FauI	CCCGC	3 cut(s)	373, 377, 392
Fnu4HI	GCNGC	4 cut(s)	126, 236, 239, 686
FokI	GGATG	5 cut(s)	326, 373, 584, 767, 848
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	126, 236, 239, 686
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	6 cut(s)	232, 234, 265, 267, 457, 480
GluI	GCNGC	4 cut(s)	126, 236, 239, 686
GsaI	CCCAGC	1 cut(s)	496
GsuI	CTGGAG	1 cut(s)	545
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	9 cut(s)	242, 261, 292, 311, 365, 376, 395, 484, 1002
HhaI	GCGC	6 cut(s)	233, 235, 266, 268, 458, 481
Hin1II	CATG	2 cut(s)	88, 424
Hin6I	GCGC	6 cut(s)	231, 233, 264, 266, 456, 479
HinP1I	GCGC	6 cut(s)	231, 233, 264, 266, 456, 479
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	4 cut(s)	245, 307, 581, 951
HpaII	CCGG	9 cut(s)	242, 261, 292, 311, 365, 376, 395, 484, 1002
HphI	GGTGA	2 cut(s)	473, 907
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	8 cut(s)	154, 282, 306, 328, 414, 780, 804, 991
Hpy188III	TCNNGA	4 cut(s)	311, 390, 524, 748
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	3 cut(s)	56, 275, 1027
HpyAV	CCTTC	3 cut(s)	217, 667, 939
HpyCH4III	ACNGT	2 cut(s)	604, 853
HpyCH4IV	ACGT	1 cut(s)	1022
HpyCH4V	TGCA	1 cut(s)	818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 361, 381
HpyF3I	CTNAG	3 cut(s)	469, 777, 988
HpySE526I	ACGT	1 cut(s)	1022
Hsp92II	CATG	2 cut(s)	88, 424
HspAI	GCGC	6 cut(s)	231, 233, 264, 266, 456, 479
Kpn2I	TCCGGA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	175, 199, 593, 627, 763
LmnI	GCTCC	2 cut(s)	30, 417
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	1022
MaeIII	GTNAC	3 cut(s)	772, 809, 853
MalI	GATC	5 cut(s)	177, 201, 595, 629, 765
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	5 cut(s)	175, 199, 593, 627, 763
MboII	GAAGA	7 cut(s)	73, 249, 565, 571, 655, 793, 899
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	3 cut(s)	27, 468, 545
MluCI	AATT	6 cut(s)	137, 446, 612, 621, 862, 943
MlyI	GAGTC	1 cut(s)	960
MmeI	TCCRAC	2 cut(s)	305, 620
MroI	TCCGGA	1 cut(s)	310
MseI	TTAA	3 cut(s)	297, 947, 1019
MspA1I	CMGCKG	1 cut(s)	823
MspI	CCGG	9 cut(s)	242, 261, 292, 311, 365, 376, 395, 484, 1002
MspR9I	CCNGG	6 cut(s)	377, 396, 484, 568, 636, 833
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	915
MvaI	CCWGG	3 cut(s)	568, 636, 833
MvnI	CGCG	2 cut(s)	233, 266
MwoI	GCNNNNNNNGC	3 cut(s)	131, 361, 381
NciI	CCSGG	3 cut(s)	377, 396, 484
NdeII	GATC	5 cut(s)	175, 199, 593, 627, 763
NlaIII	CATG	2 cut(s)	88, 424
NlaIV	GGNNCC	3 cut(s)	95, 544, 927
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	3 cut(s)	772, 809, 853
NspI	RCATGY	1 cut(s)	424
PalAI	GGCGCGCC	1 cut(s)	231
PaqCI	CACCTGC	1 cut(s)	449
PauI	GCGCGC	2 cut(s)	231, 264
PctI	GAATGC	1 cut(s)	915
PfeI	GAWTC	3 cut(s)	245, 307, 581
PflFI	GACNNNGTC	1 cut(s)	710
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	4 cut(s)	127, 237, 240, 687
PleI	GAGTC	1 cut(s)	959
PpsI	GAGTC	1 cut(s)	959
PshAI	GACNNNNGTC	1 cut(s)	276
Psp6I	CCWGG	3 cut(s)	566, 634, 831
PspFI	CCCAGC	1 cut(s)	492
PspGI	CCWGG	3 cut(s)	566, 634, 831
PspN4I	GGNNCC	3 cut(s)	95, 544, 927
PspPI	GGNCC	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	710
PteI	GCGCGC	2 cut(s)	231, 264
PvuII	CAGCTG	1 cut(s)	823
RsaI	GTAC	3 cut(s)	197, 206, 520
RsaNI	GTAC	3 cut(s)	196, 205, 519
Rsr2I	CGGWCCG	1 cut(s)	278
RsrII	CGGWCCG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	297, 947, 1019
SatI	GCNGC	4 cut(s)	126, 236, 239, 686
Sau3AI	GATC	5 cut(s)	175, 199, 593, 627, 763
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	960
ScrFI	CCNGG	6 cut(s)	377, 396, 484, 568, 636, 833
SduI	GDGCHC	3 cut(s)	27, 468, 545
SfaNI	GCATC	1 cut(s)	351
SgsI	GGCGCGCC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	6 cut(s)	137, 446, 612, 621, 862, 943
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	6 cut(s)	375, 394, 482, 566, 634, 831
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	2 cut(s)	604, 853
TaiI	ACGT	1 cut(s)	1025
TaqI	TCGA	1 cut(s)	606
TasI	AATT	6 cut(s)	137, 446, 612, 621, 862, 943
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	3 cut(s)	128, 238, 241
TfiI	GAWTC	3 cut(s)	245, 307, 581
Tru1I	TTAA	3 cut(s)	297, 947, 1019
Tru9I	TTAA	3 cut(s)	297, 947, 1019
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	3 cut(s)	772, 809, 853
TseI	GCWGC	1 cut(s)	685
Tsp45I	GTSAC	3 cut(s)	772, 809, 853
TspDTI	ATGAA	3 cut(s)	101, 572, 900
TspRI	CASTG	1 cut(s)	820
Tth111I	GACNNNGTC	1 cut(s)	710
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	3 cut(s)	137, 612, 943
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.