Rmu_sc0000766.1_g000028

DnaJ homolog subfamily B member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000766.1
Physical Location & Seq
Reverse (-)
169227 .. 172947
3721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000766.1_g000028.1.cds

Sequence Viewer

Length: 1368 bp
atgtctacgttggatctgtatgctatttatgcttcttctctcttgctttcttctctgtacaggagatcaaccacggttgaggaaattctcacaattgagatcaagccaggttggaaaaaaggcacaaaaatcactttcccagagaagggaaatgagcagcgaggtgttataccagcagacctcgtctttattattgatgagaaacctcatagtcttttcaagagggatgggaacgatcttatcgtcactcagaagatatctcttgccgaagctctgacaggtcacacagcacagctgacaaccctggatgggagaagtctcacagtgcccatcaattctattatcagccccacctatgaagaagtggtcaaaggggagggaatgccaatccccaaggaaccttccaaaaaggggaacttaagagtcaagttcaacatcaagttccctaccaagcttacctcagagcagaaaaccggtataaaaaggtgtgttgggttgcttgtgcacgtacgtgtatgttggtcttgtctgcgagcggtgtacgatcagtacggcgaggagggtttgaaggcaggggcgccgccaccggattcggggttttcggccggcggacaggacggtccgaccacgttccggttcaataccaggaacccggatgatatattttccgagtttttcgggttttcgggtttcggacaggggatgccggacatgggccgggccggcgggtcgaggccgggtggggcgttcccgaggagcatgttcggggatgacatatttgcttcgtttagaggcgcaggtgaaccctctgctaatgtgcagaggaaagcccagcccattgagaggacattgccatgtactctggaggacttgtataagggcaccaccaagaagatgaagatttccagggatgttgctgattctagtgggagatcaaccacggttgaggaaattctcacaattgagatcaagccaggttggaaaaaaggcacaaaaatcactttcccagagaagggaaatgagcagcgaggtgttataccagcagacctcgtctttattattgatgagaaacctcatagtcttttcaagagggatgggaacgatcttatcgtcactcagaagatatctcttgccgaagctctgacaggtcacacagcacagctgacaaccctggatgggagaagtctcacagtgcccatcaattctattatcagccccacctatgaagaagtggtcaaaggggagggaatgccaatccccaaggaaccttccaaaaaggggaacttaagagtcaagttcaacatcaagttccctaccaagcttacctcagagcagaaaaccggtataaaaaggttactaacggcgtaa

Protein Analysis

455

Amino Acids

49.89

Weight (kDa)

9.32

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 788
AasI GACNNNNNNGTC 1 cut(s) 618
Acc36I ACCTGC 1 cut(s) 788
AccB1I GGYRCC 2 cut(s) 577, 881
AccBSI CCGCTC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 5
AciI CCGC 4 cut(s) 536, 581, 609, 726
AclWI GGATC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 2 cut(s) 84, 951
AcyI GRCGYC 1 cut(s) 578
AfaI GTAC 5 cut(s) 59, 510, 542, 551, 859
AflII CTTAAG 2 cut(s) 418, 1285
AflIII ACRYGT 1 cut(s) 511
AgeI ACCGGT 2 cut(s) 473, 1340
AgsI TTSAA 6 cut(s) 220, 433, 568, 640, 1087, 1300
AjnI CCWGG 6 cut(s) 106, 303, 644, 905, 973, 1170
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 6 cut(s) 272, 295, 454, 1139, 1162, 1321
AluI AGCT 6 cut(s) 272, 295, 454, 1139, 1162, 1321
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 2 cut(s) 323, 1190
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 1 cut(s) 21
Ama87I CYCGRG 1 cut(s) 751
AoxI GGCC 4 cut(s) 603, 715, 720, 734
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 2 cut(s) 157, 1024
ApoI RAATTY 2 cut(s) 84, 951
AsiGI ACCGGT 2 cut(s) 473, 1340
AspLEI GCGC 2 cut(s) 580, 797
AspS9I GGNCC 3 cut(s) 620, 715, 720
AsuC2I CCSGG 3 cut(s) 653, 719, 738
AsuHPI GGTGA 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 1 cut(s) 620
BaeGI GKGCMC 4 cut(s) 330, 507, 884, 1197
BanI GGYRCC 2 cut(s) 577, 881
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 169, 1036
BccI CCATC 6 cut(s) 221, 302, 338, 1088, 1169, 1205
BceAI ACGGC 1 cut(s) 568
BciT130I CCWGG 6 cut(s) 108, 305, 646, 907, 975, 1172
BcnI CCSGG 3 cut(s) 653, 719, 738
BcoDI GTCTC 2 cut(s) 323, 1190
BfaI CTAG 1 cut(s) 924
BfoI RGCGCY 1 cut(s) 581
BfrI CTTAAG 2 cut(s) 418, 1285
BfuAI ACCTGC 1 cut(s) 788
BglI GCCNNNNNGGC 1 cut(s) 723
BisI GCNGC 3 cut(s) 158, 581, 1025
BlsI GCNGC 3 cut(s) 159, 582, 1026
Bme1390I CCNGG 9 cut(s) 108, 305, 646, 653, 719, 738, 907, 975, 1172
Bme18I GGWCC 1 cut(s) 620
BmeT110I CYCGRG 1 cut(s) 751
BmgT120I GGNCC 3 cut(s) 620, 715, 720
BmiI GGNNCC 5 cut(s) 399, 579, 650, 883, 1266
BmrFI CCNGG 9 cut(s) 108, 305, 646, 653, 719, 738, 907, 975, 1172
BmsI GCATC 1 cut(s) 693
BpmI CTGGAG 1 cut(s) 884
BpuMI CCSGG 3 cut(s) 653, 719, 738
BsaAI YACGTR 2 cut(s) 508, 512
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 8 cut(s) 72, 303, 393, 752, 906, 939, 1170, 1260
BsaWI WCCGGW 4 cut(s) 473, 586, 633, 1340
BsaXI ACNNNNNCTCC 2 cut(s) 857, 887
Bse118I RCCGGY 4 cut(s) 473, 605, 722, 1340
Bse3DI GCAATG 1 cut(s) 848
BseBI CCWGG 6 cut(s) 108, 305, 646, 907, 975, 1172
BseDI CCNNGG 8 cut(s) 72, 303, 393, 752, 906, 939, 1170, 1260
BseGI GGATG 8 cut(s) 232, 313, 661, 708, 775, 916, 1099, 1180
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 4 cut(s) 263, 474, 1130, 1341
BseRI GAGGAG 2 cut(s) 572, 769
BseSI GKGCMC 4 cut(s) 330, 507, 884, 1197
BseX3I CGGCCG 1 cut(s) 603
BseXI GCAGC 2 cut(s) 169, 1036
BseYI CCCAGC 1 cut(s) 831
BsgI GTGCAG 1 cut(s) 839
Bsh1285I CGRYCG 1 cut(s) 606
BshFI GGCC 4 cut(s) 605, 717, 722, 736
BshNI GGYRCC 2 cut(s) 577, 881
BshTI ACCGGT 2 cut(s) 473, 1340
BsiEI CGRYCG 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 751
BsiWI CGTACG 1 cut(s) 508
BsmAI GTCTC 2 cut(s) 323, 1190
BsmI GAATGC 2 cut(s) 387, 1254
BsnI GGCC 4 cut(s) 605, 717, 722, 736
BsoBI CYCGRG 1 cut(s) 751
Bsp1286I GDGCHC 4 cut(s) 330, 507, 884, 1197
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 8 cut(s) 13, 65, 99, 235, 544, 932, 966, 1102
BspACI CCGC 4 cut(s) 536, 581, 609, 726
BspANI GGCC 4 cut(s) 605, 717, 722, 736
BspCNI CTCAG 4 cut(s) 262, 473, 1129, 1340
BspLI GGNNCC 5 cut(s) 399, 579, 650, 883, 1266
BspMI ACCTGC 1 cut(s) 788
BspPI GGATC 1 cut(s) 21
BspT107I GGYRCC 2 cut(s) 577, 881
BspTI CTTAAG 2 cut(s) 418, 1285
BsrBI CCGCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 4 cut(s) 473, 605, 722, 1340
BsrGI TGTACA 1 cut(s) 57
BssAI RCCGGY 4 cut(s) 473, 605, 722, 1340
BssECI CCNNGG 8 cut(s) 72, 303, 393, 752, 906, 939, 1170, 1260
BssMI GATC 8 cut(s) 13, 65, 99, 235, 544, 932, 966, 1102
BssNI GRCGYC 1 cut(s) 578
BssT1I CCWWGG 2 cut(s) 393, 1260
Bst2UI CCWGG 6 cut(s) 108, 305, 646, 907, 975, 1172
Bst4CI ACNGT 5 cut(s) 76, 325, 620, 943, 1192
BstACI GRCGYC 1 cut(s) 578
BstAFI CTTAAG 2 cut(s) 418, 1285
BstAUI TGTACA 1 cut(s) 57
BstBAI YACGTR 2 cut(s) 508, 512
BstC8I GCNNGC 3 cut(s) 534, 607, 724
BstDEI CTNAG 4 cut(s) 249, 460, 1116, 1327
BstDSI CCRYGG 2 cut(s) 72, 939
BstF5I GGATG 8 cut(s) 232, 313, 661, 708, 775, 916, 1099, 1180
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 2 cut(s) 580, 797
BstKTI GATC 8 cut(s) 16, 68, 102, 238, 547, 935, 969, 1105
BstMAI GTCTC 2 cut(s) 323, 1190
BstMBI GATC 8 cut(s) 13, 65, 99, 235, 544, 932, 966, 1102
BstMCI CGRYCG 1 cut(s) 606
BstMWI GCNNNNNNNGC 2 cut(s) 29, 723
BstNI CCWGG 6 cut(s) 108, 305, 646, 907, 975, 1172
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 9 cut(s) 106, 303, 644, 651, 717, 736, 905, 973, 1170
BstSLI GKGCMC 4 cut(s) 330, 507, 884, 1197
BstV1I GCAGC 2 cut(s) 169, 1036
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BstZI CGGCCG 1 cut(s) 603
BsuRI GGCC 4 cut(s) 605, 717, 722, 736
BtgI CCRYGG 2 cut(s) 72, 939
BtsCI GGATG 8 cut(s) 232, 313, 661, 708, 775, 916, 1099, 1180
BtsIMutI CAGTG 2 cut(s) 330, 1197
BveI ACCTGC 1 cut(s) 788
Cac8I GCNNGC 3 cut(s) 534, 607, 724
CfoI GCGC 2 cut(s) 580, 797
Cfr10I RCCGGY 4 cut(s) 473, 605, 722, 1340
Cfr13I GGNCC 3 cut(s) 620, 715, 720
CpoI CGGWCCG 1 cut(s) 620
Csp6I GTAC 5 cut(s) 58, 509, 541, 550, 858
CspAI ACCGGT 2 cut(s) 473, 1340
CspI CGGWCCG 1 cut(s) 620
CviAII CATG 3 cut(s) 712, 760, 855
CviQI GTAC 5 cut(s) 58, 509, 541, 550, 858
DdeI CTNAG 4 cut(s) 249, 460, 1116, 1327
DinI GGCGCC 1 cut(s) 579
DpnI GATC 8 cut(s) 15, 67, 101, 237, 546, 934, 968, 1104
DpnII GATC 8 cut(s) 13, 65, 99, 235, 544, 932, 966, 1102
DrdI GACNNNNNNGTC 1 cut(s) 618
DseDI GACNNNNNNGTC 1 cut(s) 618
EaeI YGGCCR 1 cut(s) 603
EagI CGGCCG 1 cut(s) 603
EciI GGCGGA 1 cut(s) 624
EclXI CGGCCG 1 cut(s) 603
Eco130I CCWWGG 2 cut(s) 393, 1260
Eco32I GATATC 2 cut(s) 258, 1125
Eco47I GGWCC 1 cut(s) 620
Eco52I CGGCCG 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 751
EcoRII CCWGG 6 cut(s) 106, 303, 644, 905, 973, 1170
EcoRV GATATC 2 cut(s) 258, 1125
EcoT14I CCWWGG 2 cut(s) 393, 1260
EgeI GGCGCC 1 cut(s) 579
EheI GGCGCC 1 cut(s) 579
ErhI CCWWGG 2 cut(s) 393, 1260
FaeI CATG 3 cut(s) 715, 763, 858
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 1268, 1300
FatI CATG 3 cut(s) 711, 759, 854
FauI CCCGC 1 cut(s) 719
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 158, 581, 1025
FokI GGATG 8 cut(s) 239, 320, 668, 715, 782, 923, 1106, 1187
Fsp4HI GCNGC 3 cut(s) 158, 581, 1025
FspBI CTAG 1 cut(s) 924
GlaI GCGC 2 cut(s) 579, 796
GluI GCNGC 3 cut(s) 158, 581, 1025
GsaI CCCAGC 1 cut(s) 835
GsuI CTGGAG 1 cut(s) 884
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 4 cut(s) 605, 717, 722, 736
HhaI GCGC 2 cut(s) 580, 797
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 3 cut(s) 715, 763, 858
Hin6I GCGC 2 cut(s) 578, 795
HinP1I GCGC 2 cut(s) 578, 795
HindIII AAGCTT 2 cut(s) 452, 1319
HinfI GANTC 4 cut(s) 423, 590, 920, 1290
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 4 cut(s) 6, 505, 541, 803
Hpy188I TCNGA 9 cut(s) 252, 276, 463, 624, 670, 695, 1119, 1143, 1330
Hpy188III TCNNGA 4 cut(s) 220, 751, 863, 1087
Hpy8I GTNNAC 4 cut(s) 6, 505, 541, 803
HpyAV CCTTC 5 cut(s) 139, 411, 562, 1006, 1278
HpyCH4III ACNGT 5 cut(s) 76, 325, 620, 943, 1192
HpyCH4IV ACGT 4 cut(s) 8, 507, 511, 629
HpyCH4V TGCA 2 cut(s) 505, 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 723
HpyF3I CTNAG 4 cut(s) 249, 460, 1116, 1327
HpySE526I ACGT 4 cut(s) 8, 507, 511, 629
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 3 cut(s) 715, 763, 858
HspAI GCGC 2 cut(s) 578, 795
KasI GGCGCC 1 cut(s) 577
KroI GCCGGC 2 cut(s) 605, 722
KroNI GCCGGC 2 cut(s) 607, 724
Kzo9I GATC 8 cut(s) 13, 65, 99, 235, 544, 932, 966, 1102
LmnI GCTCC 1 cut(s) 756
Lsp1109I GCAGC 2 cut(s) 169, 1036
LweI GCATC 1 cut(s) 693
MaeI CTAG 1 cut(s) 924
MaeII ACGT 4 cut(s) 8, 507, 511, 629
MaeIII GTNAC 5 cut(s) 244, 281, 1111, 1148, 1353
MalI GATC 8 cut(s) 15, 67, 101, 237, 546, 934, 968, 1104
MbiI CCGCTC 1 cut(s) 536
MboI GATC 8 cut(s) 13, 65, 99, 235, 544, 932, 966, 1102
MboII GAAGA 8 cut(s) 27, 42, 265, 371, 904, 910, 1132, 1238
MfeI CAATTG 2 cut(s) 93, 960
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 4 cut(s) 330, 507, 884, 1197
MluCI AATT 6 cut(s) 84, 93, 334, 951, 960, 1201
Mly113I GGCGCC 1 cut(s) 578
MlyI GAGTC 2 cut(s) 432, 1299
MmeI TCCRAC 3 cut(s) 92, 647, 959
MroNI GCCGGC 2 cut(s) 605, 722
MseI TTAA 2 cut(s) 419, 1286
MslI CAYNNNNRTG 2 cut(s) 510, 853
MspA1I CMGCKG 2 cut(s) 295, 1162
MspCI CTTAAG 2 cut(s) 418, 1285
MspR9I CCNGG 9 cut(s) 108, 305, 646, 653, 719, 738, 907, 975, 1172
MunI CAATTG 2 cut(s) 93, 960
Mva1269I GAATGC 2 cut(s) 387, 1254
MvaI CCWGG 6 cut(s) 108, 305, 646, 907, 975, 1172
MwoI GCNNNNNNNGC 2 cut(s) 29, 723
NaeI GCCGGC 2 cut(s) 607, 724
NarI GGCGCC 1 cut(s) 578
NciI CCSGG 3 cut(s) 653, 719, 738
NdeII GATC 8 cut(s) 13, 65, 99, 235, 544, 932, 966, 1102
NgoMIV GCCGGC 2 cut(s) 605, 722
NlaIII CATG 3 cut(s) 715, 763, 858
NlaIV GGNNCC 5 cut(s) 399, 579, 650, 883, 1266
NmuCI GTSAC 4 cut(s) 244, 281, 1111, 1148
NspI RCATGY 1 cut(s) 763
OliI CACNNNNGTG 1 cut(s) 510
PaqCI CACCTGC 1 cut(s) 788
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 1107
PctI GAATGC 2 cut(s) 387, 1254
PdiI GCCGGC 2 cut(s) 607, 724
PfeI GAWTC 2 cut(s) 590, 920
Pfl23II CGTACG 1 cut(s) 508
PflFI GACNNNGTC 2 cut(s) 182, 1049
PinAI ACCGGT 2 cut(s) 473, 1340
PkrI GCNGC 3 cut(s) 159, 582, 1026
PleI GAGTC 2 cut(s) 431, 1298
PluTI GGCGCC 1 cut(s) 581
PpsI GAGTC 2 cut(s) 431, 1298
Ppu21I YACGTR 2 cut(s) 508, 512
Psp6I CCWGG 6 cut(s) 106, 303, 644, 905, 973, 1170
PspFI CCCAGC 1 cut(s) 831
PspGI CCWGG 6 cut(s) 106, 303, 644, 905, 973, 1170
PspLI CGTACG 1 cut(s) 508
PspN4I GGNNCC 5 cut(s) 399, 579, 650, 883, 1266
PspPI GGNCC 3 cut(s) 620, 715, 720
PsuI RGATCY 1 cut(s) 13
PsyI GACNNNGTC 2 cut(s) 182, 1049
PvuII CAGCTG 2 cut(s) 295, 1162
RsaI GTAC 5 cut(s) 59, 510, 542, 551, 859
RsaNI GTAC 5 cut(s) 58, 509, 541, 550, 858
RseI CAYNNNNRTG 2 cut(s) 510, 853
Rsr2I CGGWCCG 1 cut(s) 620
RsrII CGGWCCG 1 cut(s) 620
SaqAI TTAA 2 cut(s) 419, 1286
SatI GCNGC 3 cut(s) 158, 581, 1025
Sau3AI GATC 8 cut(s) 13, 65, 99, 235, 544, 932, 966, 1102
Sau96I GGNCC 3 cut(s) 620, 715, 720
SchI GAGTC 2 cut(s) 432, 1299
ScrFI CCNGG 9 cut(s) 108, 305, 646, 653, 719, 738, 907, 975, 1172
SduI GDGCHC 4 cut(s) 330, 507, 884, 1197
SfaNI GCATC 1 cut(s) 693
SfoI GGCGCC 1 cut(s) 579
SinI GGWCC 1 cut(s) 620
SmiMI CAYNNNNRTG 2 cut(s) 510, 853
SmlI CTYRAG 2 cut(s) 418, 1285
SmoI CTYRAG 2 cut(s) 418, 1285
Sse9I AATT 6 cut(s) 84, 93, 334, 951, 960, 1201
SsiI CCGC 4 cut(s) 536, 581, 609, 726
SspDI GGCGCC 1 cut(s) 577
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 9 cut(s) 106, 303, 644, 651, 717, 736, 905, 973, 1170
StyI CCWWGG 2 cut(s) 393, 1260
TaaI ACNGT 5 cut(s) 76, 325, 620, 943, 1192
TaiI ACGT 4 cut(s) 11, 510, 514, 632
TaqI TCGA 1 cut(s) 731
TasI AATT 6 cut(s) 84, 93, 334, 951, 960, 1201
TatI WGTACW 2 cut(s) 57, 857
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 2 cut(s) 590, 920
Tru1I TTAA 2 cut(s) 419, 1286
Tru9I TTAA 2 cut(s) 419, 1286
TscAI CASTG 2 cut(s) 330, 1197
TseFI GTSAC 4 cut(s) 244, 281, 1111, 1148
TseI GCWGC 2 cut(s) 157, 1024
Tsp45I GTSAC 4 cut(s) 244, 281, 1111, 1148
TspDTI ATGAA 3 cut(s) 372, 911, 1239
TspRI CASTG 2 cut(s) 330, 1197
Tth111I GACNNNGTC 2 cut(s) 182, 1049
Vha464I CTTAAG 2 cut(s) 418, 1285
VneI GTGCAC 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 2 cut(s) 84, 951
XceI RCATGY 1 cut(s) 763
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.