Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

24760483 .. 24762475

Gene Structure 1993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1167200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACTAGTGATGTGGGTACTTGTTGGCTTGTGGGTCTTATCTTGATCTGGGGGTTGTCTAAGTTTCTAACTTCTATTGTTGTCTCGTTTCCCCACATGATAGCTCTTCTCATTGGATTAAAAGTATCATTATTTGAGCAGGAAAGCTCTTGTCGACAAATTGCACAAAACATCAGTATGTATCAGTGGAGAACTACCACGGTGGAGGAAATTCTAACAATTGAGATCAAGCCAGGGTGGAAAAAGGGCACGAAAATCACTTTCCCAGAGAAAGGGAATGAACAGAGAGGAATCATACCCGCAGACCTTGTATTTATCATTGATGAGAAGCCTCACACCCTTTTCAAGAGGGATGGGAACGATCTTACAATCACTCAGAAGATATCTCTTGCAGAAGCTTTGACAGGTTACACGGCACAGTTGACAACCCTCGATGGGAGAAATCTTACAGTCCCCATCACCAATATCATCAGTCCCACCTATGAAGAAGTGGTTAAAGGGGAGGGGATGCCTATTCCCAAGGAGCCATCCAAAAGGGGAAACTTGAGAATCAAGTTCAACATCAAGTTCCCTACGAAGCTTACCTCGGACCAAAAATCCAACATCAAACGGTTATTAACATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

209

Amino Acids

23.35

Weight (kDa)

9.32

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	57 - 191	9.1e-35	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	154
AciI	CCGC	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	272, 435
AgsI	TTSAA	2 cut(s)	346, 559
AhlI	ACTAGT	1 cut(s)	5
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	4 cut(s)	104, 147, 398, 580
AluI	AGCT	4 cut(s)	104, 147, 398, 580
Alw26I	GTCTC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	589
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	589
BaeGI	GKGCMC	1 cut(s)	251
BccI	CCATC	4 cut(s)	347, 428, 464, 535
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	88
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	565
BsaJI	CCNNGG	4 cut(s)	198, 233, 519, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 435
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	4 cut(s)	198, 233, 519, 585
BseGI	GGATG	3 cut(s)	358, 513, 527
BseLI	CCNNNNNNNGG	2 cut(s)	272, 435
BseMII	CTCAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	251
BslFI	GGGAC	2 cut(s)	437, 459
BslI	CCNNNNNNNGG	2 cut(s)	272, 435
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	2 cut(s)	437, 459
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	45, 225, 361
BspACI	CCGC	1 cut(s)	300
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	525
BspQI	GCTCTTC	1 cut(s)	111
BssECI	CCNNGG	4 cut(s)	198, 233, 519, 585
BssMI	GATC	3 cut(s)	45, 225, 361
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	4 cut(s)	202, 420, 451, 612
Bst6I	CTCTTC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	60, 375, 624
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	358, 513, 527
BstKTI	GATC	3 cut(s)	48, 228, 364
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	45, 225, 361
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	251
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	358, 513, 527
BtsIMutI	CAGTG	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	8 cut(s)	28, 104, 147, 232, 331, 398, 526, 580
CviKI_1	RGCY	8 cut(s)	28, 104, 147, 232, 331, 398, 526, 580
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	3 cut(s)	60, 375, 624
DpnI	GATC	3 cut(s)	47, 227, 363
DpnII	GATC	3 cut(s)	45, 225, 361
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	519
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	98, 179, 296, 483
FaqI	GGGAC	2 cut(s)	437, 459
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	154
FokI	GGATG	3 cut(s)	365, 514, 520
FspBI	CTAG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	100
HincII	GTYRAC	2 cut(s)	155, 423
HindII	GTYRAC	2 cut(s)	155, 423
HindIII	AAGCTT	2 cut(s)	396, 578
HinfI	GANTC	2 cut(s)	291, 549
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	155, 423
Hpy188I	TCNGA	2 cut(s)	378, 589
Hpy188III	TCNNGA	2 cut(s)	43, 346
Hpy8I	GTNNAC	2 cut(s)	155, 423
HpyCH4III	ACNGT	4 cut(s)	202, 420, 451, 612
HpyCH4V	TGCA	2 cut(s)	164, 392
HpyF3I	CTNAG	3 cut(s)	60, 375, 624
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	45, 225, 361
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	523
LpnPI	CCDG	6 cut(s)	34, 125, 219, 246, 279, 390
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	3 cut(s)	47, 227, 363
MboI	GATC	3 cut(s)	45, 225, 361
MboII	GAAGA	3 cut(s)	98, 391, 497
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	3 cut(s)	159, 210, 219
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	7 cut(s)	199, 281, 342, 342, 440, 496, 595
MseI	TTAA	3 cut(s)	119, 495, 617
MslI	CAYNNNNRTG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	45, 225, 361
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	291, 549
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	589
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	176
SalI	GTCGAC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	119, 495, 617
Sau3AI	GATC	3 cut(s)	45, 225, 361
Sau96I	GGNCC	1 cut(s)	589
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	8 cut(s)	106, 149, 309, 400, 409, 482, 582, 587
SfaNI	GCATC	1 cut(s)	498
SinI	GGWCC	1 cut(s)	589
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	3 cut(s)	159, 210, 219
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	4 cut(s)	202, 420, 451, 612
TaqI	TCGA	2 cut(s)	154, 432
TasI	AATT	3 cut(s)	159, 210, 219
TfiI	GAWTC	2 cut(s)	291, 549
Tru1I	TTAA	3 cut(s)	119, 495, 617
Tru9I	TTAA	3 cut(s)	119, 495, 617
TscAI	CASTG	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	294, 498
TspRI	CASTG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	154
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.