Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

26090255 .. 26093659

Gene Structure 3405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G277900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGCGTCGATTACTACAAGGTTCTTCAGGTAGAACGAAGTGCCAAAGACGATGACTTGAAGAAAGCGTACCGAAAGCTCGCCATGAAGTGGCACCCTGACAAAAACCCTAACAACAAGAAAGCCGCCGAGGCCAAATTCAAGCAAATCTCTGAAGCCTACGACGTTTTGAGTGATCCCCAAAAGCGAGCGGTGTACGATCAATATGGTGAGGAGGGTTTGAAGGGAGGGGTGCCGCCTCCTGATTCGTCCTGGTCGGGCGGGCAAGGCCAAGGCCAAGATGGCGGTCCGACGATGTTCCGGTTCAACACCAGGAGCCCCGATGATATTTTCTCTGAATTTTTTGGGTTTTCGGGTTTCGGGGGAATGCCCGATATGGGCGGTTCACGGGCAGGCGGGTCTCGGGCTGGTGGGAACCCATTCCCGAGGAGTATGTTTGGGGAAGACATATTCGCGCAATTTAGAGGTGGAGCAGAGGCCTCAGGGAATGTGCCCAGGAAATCTGCACCGATAGAGAGGACATTGCCTTGTACTTTGGAGGACTTATACAAGGGCACCACCAAAAAGATGAAGATTTCTAGGGATGTTCCCGATGCTAGTGGGAGAACTACCACAGTGGAGGAAATTCTAACAATTGAGATCAAGCCAGGTTGGAAGAAAGGCACAAAAATCACTTTTCCAGAGAAAGGGAATGAACAGAGAGGAATTATACCAGCAGACCTTGTCTTTATCATTGATGAGAAGCCTCATAGTCTTTTCAAGAGGGATGGGAATGATCTTATTGTCACTCAGAAGATATCTCTTGCGGAAGCTCTGACAGGTCACACTGCACAGCTGACAACACTTGACGGGAGAAGTCTGACAGTTCCCATCAATTCTATTATCAGTCCCACATATGAAGAAGTGGTCAAAGGGGAGGGGATGCCTATCCCGAAGGAACCTTCCAAAAGGGGAAACTTGAAAATCAAGTTTAACATCAAGTTCCCTACCAAGCTTACCTCAGAGCAGAAAACTGGCATCAAACGGTTATTAACATCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

348

Amino Acids

38.11

Weight (kDa)

9.31

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	93, 232, 554
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	191
AccII	CGCG	1 cut(s)	455
AciI	CCGC	8 cut(s)	126, 191, 236, 261, 285, 381, 396, 806
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	3 cut(s)	137, 338, 624
AcuI	CTGAAG	2 cut(s)	11, 174
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	3 cut(s)	71, 197, 532
AfiI	CCNNNNNNNGG	3 cut(s)	90, 377, 686
AgsI	TTSAA	6 cut(s)	61, 142, 223, 307, 760, 961
AjnI	CCWGG	4 cut(s)	251, 311, 494, 646
AluBI	AGCT	4 cut(s)	79, 812, 835, 994
AluI	AGCT	4 cut(s)	79, 812, 835, 994
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	2 cut(s)	402, 424
AoxI	GGCC	4 cut(s)	132, 268, 274, 477
ApoI	RAATTY	3 cut(s)	137, 338, 624
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	2 cut(s)	402, 424
AvaII	GGWCC	1 cut(s)	287
AxyI	CCTNAGG	1 cut(s)	481
BaeGI	GKGCMC	2 cut(s)	495, 557
BanI	GGYRCC	3 cut(s)	93, 232, 554
BanII	GRGCYC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	450
BccI	CCATC	3 cut(s)	275, 761, 878
BciT130I	CCWGG	4 cut(s)	253, 313, 496, 648
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	2 cut(s)	579, 597
BglI	GCCNNNNNGGC	2 cut(s)	131, 282
BisI	GCNGC	2 cut(s)	126, 236
BlsI	GCNGC	2 cut(s)	127, 237
Bme1390I	CCNGG	4 cut(s)	253, 313, 496, 648
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	2 cut(s)	402, 424
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	6 cut(s)	95, 234, 317, 416, 556, 939
BmrFI	CCNGG	4 cut(s)	253, 313, 496, 648
BmsI	GCATC	3 cut(s)	583, 912, 1026
BpiI	GAAGAC	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	926
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	4 cut(s)	129, 271, 425, 494
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 377, 686
Bse1I	ACTGG	1 cut(s)	1018
Bse21I	CCTNAGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	521
Bse8I	GATNNNNATC	1 cut(s)	926
BseBI	CCWGG	4 cut(s)	253, 313, 496, 648
BseDI	CCNNGG	4 cut(s)	129, 271, 425, 494
BseGI	GGATG	3 cut(s)	589, 772, 927
BseJI	GATNNNNATC	1 cut(s)	926
BseLI	CCNNNNNNNGG	3 cut(s)	90, 377, 686
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	3 cut(s)	495, 803, 1014
BseNI	ACTGG	1 cut(s)	1018
BseRI	GAGGAG	2 cut(s)	227, 442
BseSI	GKGCMC	2 cut(s)	495, 557
BsgI	GTGCAG	2 cut(s)	489, 813
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	4 cut(s)	134, 270, 276, 479
BshNI	GGYRCC	3 cut(s)	93, 232, 554
BsiHKCI	CYCGRG	2 cut(s)	402, 424
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	873
BslI	CCNNNNNNNGG	3 cut(s)	90, 377, 686
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	873
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	4 cut(s)	134, 270, 276, 479
Bso31I	GGTCTC	1 cut(s)	405
BsoBI	CYCGRG	2 cut(s)	402, 424
Bsp1286I	GDGCHC	3 cut(s)	320, 495, 557
Bsp143I	GATC	4 cut(s)	175, 199, 639, 775
BspACI	CCGC	8 cut(s)	126, 191, 236, 261, 285, 381, 396, 806
BspANI	GGCC	4 cut(s)	134, 270, 276, 479
BspCNI	CTCAG	3 cut(s)	494, 802, 1013
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	6 cut(s)	95, 234, 317, 416, 556, 939
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	3 cut(s)	93, 232, 554
BspTNI	GGTCTC	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	1018
BssECI	CCNNGG	4 cut(s)	129, 271, 425, 494
BssMI	GATC	4 cut(s)	175, 199, 639, 775
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	4 cut(s)	253, 313, 496, 648
Bst4CI	ACNGT	3 cut(s)	616, 865, 1026
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	4 cut(s)	81, 189, 263, 394
BstDEI	CTNAG	3 cut(s)	481, 789, 1000
BstF5I	GGATG	3 cut(s)	589, 772, 927
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	4 cut(s)	178, 202, 642, 778
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	4 cut(s)	175, 199, 639, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 267, 282
BstNI	CCWGG	4 cut(s)	253, 313, 496, 648
BstSCI	CCNGG	4 cut(s)	251, 311, 494, 646
BstSLI	GKGCMC	2 cut(s)	495, 557
BstUI	CGCG	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	450
Bsu36I	CCTNAGG	1 cut(s)	481
BsuRI	GGCC	4 cut(s)	134, 270, 276, 479
BtsCI	GGATG	3 cut(s)	589, 772, 927
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	2 cut(s)	621, 825
Cac8I	GCNNGC	4 cut(s)	81, 189, 263, 394
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	287
CpoI	CGGWCCG	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	70, 196, 531
CspI	CGGWCCG	1 cut(s)	287
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	3 cut(s)	70, 196, 531
DdeI	CTNAG	3 cut(s)	481, 789, 1000
DpnI	GATC	4 cut(s)	177, 201, 641, 777
DpnII	GATC	4 cut(s)	175, 199, 639, 775
Eco130I	CCWWGG	1 cut(s)	271
Eco147I	AGGCCT	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	287
Eco57I	CTGAAG	2 cut(s)	11, 174
Eco81I	CCTNAGG	1 cut(s)	481
Eco88I	CYCGRG	2 cut(s)	402, 424
EcoRII	CCWGG	4 cut(s)	251, 311, 494, 646
EcoRV	GATATC	1 cut(s)	798
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	88
FaqI	GGGAC	1 cut(s)	873
FatI	CATG	1 cut(s)	84
FauI	CCCGC	2 cut(s)	254, 389
FauNDI	CATATG	1 cut(s)	895
Fnu4HI	GCNGC	2 cut(s)	126, 236
FokI	GGATG	3 cut(s)	596, 779, 934
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	126, 236
FspBI	CTAG	2 cut(s)	579, 597
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	2 cut(s)	126, 236
HaeIII	GGCC	4 cut(s)	134, 270, 276, 479
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	992
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	196, 386
Hpy188I	TCNGA	7 cut(s)	154, 291, 337, 792, 816, 861, 1003
Hpy188III	TCNNGA	6 cut(s)	242, 424, 590, 680, 760, 931
Hpy8I	GTNNAC	2 cut(s)	196, 386
Hpy99I	CGWCG	3 cut(s)	11, 167, 295
HpyAV	CCTTC	3 cut(s)	217, 928, 951
HpyCH4III	ACNGT	3 cut(s)	616, 865, 1026
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	506, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 267, 282
HpyF3I	CTNAG	3 cut(s)	481, 789, 1000
HpySE526I	ACGT	1 cut(s)	165
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	4 cut(s)	175, 199, 639, 775
LmnI	GCTCC	2 cut(s)	315, 470
LweI	GCATC	3 cut(s)	583, 912, 1026
MaeI	CTAG	2 cut(s)	579, 597
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	784, 821
MalI	GATC	4 cut(s)	177, 201, 641, 777
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	4 cut(s)	175, 199, 639, 775
MboII	GAAGA	8 cut(s)	17, 73, 455, 583, 667, 805, 911, 1029
MfeI	CAATTG	1 cut(s)	633
MhlI	GDGCHC	3 cut(s)	320, 495, 557
MluCI	AATT	7 cut(s)	137, 338, 458, 624, 633, 705, 874
MmeI	TCCRAC	2 cut(s)	314, 632
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	2 cut(s)	972, 1031
MspA1I	CMGCKG	1 cut(s)	835
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	4 cut(s)	253, 313, 496, 648
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	4 cut(s)	253, 313, 496, 648
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	131, 267, 282
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	4 cut(s)	175, 199, 639, 775
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	6 cut(s)	95, 234, 317, 416, 556, 939
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	2 cut(s)	784, 821
PceI	AGGCCT	1 cut(s)	479
PctI	GAATGC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	245
PflFI	GACNNNGTC	1 cut(s)	722
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	127, 237
Psp6I	CCWGG	4 cut(s)	251, 311, 494, 646
PspGI	CCWGG	4 cut(s)	251, 311, 494, 646
PspN4I	GGNNCC	6 cut(s)	95, 234, 317, 416, 556, 939
PspPI	GGNCC	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	722
PvuII	CAGCTG	1 cut(s)	835
RsaI	GTAC	3 cut(s)	71, 197, 532
RsaNI	GTAC	3 cut(s)	70, 196, 531
Rsr2I	CGGWCCG	1 cut(s)	287
RsrII	CGGWCCG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	972, 1031
SatI	GCNGC	2 cut(s)	126, 236
Sau3AI	GATC	4 cut(s)	175, 199, 639, 775
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	4 cut(s)	253, 313, 496, 648
SduI	GDGCHC	3 cut(s)	320, 495, 557
SfaNI	GCATC	3 cut(s)	583, 912, 1026
SinI	GGWCC	1 cut(s)	287
Sse9I	AATT	7 cut(s)	137, 338, 458, 624, 633, 705, 874
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	8 cut(s)	126, 191, 236, 261, 285, 381, 396, 806
SspMI	CTAG	2 cut(s)	579, 597
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	4 cut(s)	251, 311, 494, 646
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	616, 865, 1026
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	9
TasI	AATT	7 cut(s)	137, 338, 458, 624, 633, 705, 874
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	2 cut(s)	128, 238
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	972, 1031
Tru9I	TTAA	2 cut(s)	972, 1031
TscAI	CASTG	2 cut(s)	621, 832
TseFI	GTSAC	2 cut(s)	784, 821
Tsp45I	GTSAC	2 cut(s)	784, 821
TspDTI	ATGAA	5 cut(s)	101, 584, 708, 912, 1029
TspRI	CASTG	2 cut(s)	621, 832
Tth111I	GACNNNGTC	1 cut(s)	722
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	3 cut(s)	137, 338, 624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	2 cut(s)	579, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.