Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

39346183 .. 39349291

Gene Structure 3109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024817

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGCGTCGATTACTACAAGGTTCTTCAAGTAGAACGGAATGCCAAAGACGATGACTTGAAGAAAGCCTATCGCAAGCTCGCCATGAAATGGCACCCCGATAAAAACCCTAACAACAAGAAAGCCGCCGAAGCCAAATTCAAGCAAATCTCCGAAGCCTACGATGTTTTAAGTGATCCTCAAAAGCGAGCGGTGTACGATCAGTACGGCGAGGAGGGTTTGAAGGCAGGGGCACCGCCGCCGGATTCGGGCTTTTCTGCCGGCGGGCAGGACGGTCCGACCATGTTCCGGTTCAATACCAGGAACCCGGATGATATATTTTCCGAGTTTTTCGGGGTTTCGGGTTTCGGACAAGGGATGCCGGACATGGGCCGGGCCGGCGGGTCGAGGCCGGGCGGGTCGGCATTCCCAAGGAGCATGTTTGGGGATGACATATTTGCTTCGTTTAGAGGCGCAGGTGAGCCCTCTGCTAATGTGCAGAGGAAAGCCCAGCCCATTGAGAGGACATTGCCCTGTACTCTGGAGGACTTGTATAAGGGCACCACCAAGAAGATGAAGATTTCCAGGGATGTTGCTGATTCTAGTGGGAGATCAACCACGGTTGAGGAAATTCTCACAATTGAGATCAAGCCAGGTTGGAAAAAAGGCACAAAAATCACTTTCCCAGAGAAGGGAAATGAGCAGCGAGGTGTTATACCGGCAGACCTCGTCTTTATTATTGATGAGAAACCTCATAGTCTTTTCAAGAGGGATGGGAACGATCTTATCGTCACTCAGAAGATATCTCTTGCCGAAGCTCTGACAGGTCACACAGCACAGCTGACAACCCTGGATGGGAGAAGTCTCACAGTGCCCATCAATTCCATTATCAGCCCCACCTATGAAGAAGTGGTGAAAGGGGAGGGAATGCCAATCCCCAAGGAACCTTCCAAAAAGGGGAACTTAAGAGTCAAGTTCAACATCAAGTTCCCTACCAAGCTTACCTCAGAGCAGAAAACTGGTATAAAAAGGTTATTAACGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

342

Amino Acids

37.55

Weight (kDa)

9.31

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	2e-27	DnaJ domain
DnaJ_C	PF01556	166 - 324	1e-42	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	446
AccB1I	GGYRCC	3 cut(s)	93, 232, 539
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	7 cut(s)	126, 191, 236, 239, 264, 381, 396
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	137, 609
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	3 cut(s)	197, 206, 517
AfiI	CCNNNNNNNGG	9 cut(s)	90, 248, 288, 368, 501, 670, 671, 834, 936
AflII	CTTAAG	1 cut(s)	943
AgsI	TTSAA	7 cut(s)	29, 61, 142, 223, 295, 745, 958
AjnI	CCWGG	4 cut(s)	299, 563, 631, 828
AluBI	AGCT	4 cut(s)	79, 797, 820, 979
AluI	AGCT	4 cut(s)	79, 797, 820, 979
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	3 cut(s)	370, 375, 389
ApeKI	GCWGC	1 cut(s)	682
ApoI	RAATTY	2 cut(s)	137, 609
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	3 cut(s)	275, 370, 375
AsuC2I	CCSGG	3 cut(s)	308, 374, 393
AsuHPI	GGTGA	2 cut(s)	470, 904
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	3 cut(s)	235, 542, 855
BanI	GGYRCC	3 cut(s)	93, 232, 539
BanII	GRGCYC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	3 cut(s)	746, 827, 863
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	4 cut(s)	301, 565, 633, 830
BcnI	CCSGG	3 cut(s)	308, 374, 393
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	1 cut(s)	582
BfrI	CTTAAG	1 cut(s)	943
BfuAI	ACCTGC	1 cut(s)	446
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	3 cut(s)	126, 239, 683
BlsI	GCNGC	3 cut(s)	127, 240, 684
Bme1390I	CCNGG	7 cut(s)	301, 308, 374, 393, 565, 633, 830
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	275, 370, 375
BmiI	GGNNCC	5 cut(s)	95, 234, 305, 541, 924
BmrFI	CCNGG	7 cut(s)	301, 308, 374, 393, 565, 633, 830
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	542
BpuMI	CCSGG	3 cut(s)	308, 374, 393
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	5 cut(s)	410, 564, 597, 828, 918
BsaWI	WCCGGW	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	9 cut(s)	90, 248, 288, 368, 501, 670, 671, 834, 936
Bse118I	RCCGGY	3 cut(s)	260, 377, 697
Bse1I	ACTGG	1 cut(s)	1003
Bse3DI	GCAATG	1 cut(s)	506
BseBI	CCWGG	4 cut(s)	301, 565, 633, 830
BseDI	CCNNGG	5 cut(s)	410, 564, 597, 828, 918
BseGI	GGATG	6 cut(s)	316, 363, 433, 574, 757, 838
BseLI	CCNNNNNNNGG	9 cut(s)	90, 248, 288, 368, 501, 670, 671, 834, 936
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	788, 999
BseNI	ACTGG	1 cut(s)	1003
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	3 cut(s)	235, 542, 855
BseXI	GCAGC	1 cut(s)	694
BseYI	CCCAGC	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	372, 377, 391
BshNI	GGYRCC	3 cut(s)	93, 232, 539
BsiSI	CCGG	9 cut(s)	242, 261, 289, 308, 362, 373, 378, 392, 698
BslI	CCNNNNNNNGG	9 cut(s)	90, 248, 288, 368, 501, 670, 671, 834, 936
BsmAI	GTCTC	1 cut(s)	848
BsmI	GAATGC	3 cut(s)	46, 404, 912
BsnI	GGCC	3 cut(s)	372, 377, 391
Bsp1286I	GDGCHC	4 cut(s)	235, 465, 542, 855
Bsp143I	GATC	5 cut(s)	175, 199, 590, 624, 760
BspACI	CCGC	7 cut(s)	126, 191, 236, 239, 264, 381, 396
BspANI	GGCC	3 cut(s)	372, 377, 391
BspCNI	CTCAG	2 cut(s)	787, 998
BspLI	GGNNCC	5 cut(s)	95, 234, 305, 541, 924
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	3 cut(s)	93, 232, 539
BspTI	CTTAAG	1 cut(s)	943
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	506
BsrFI	RCCGGY	3 cut(s)	260, 377, 697
BsrI	ACTGG	1 cut(s)	1003
BssAI	RCCGGY	3 cut(s)	260, 377, 697
BssECI	CCNNGG	5 cut(s)	410, 564, 597, 828, 918
BssMI	GATC	5 cut(s)	175, 199, 590, 624, 760
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	410, 918
Bst2UI	CCWGG	4 cut(s)	301, 565, 633, 830
Bst4CI	ACNGT	3 cut(s)	275, 601, 850
BstACI	GRCGYC	1 cut(s)	6
BstAFI	CTTAAG	1 cut(s)	943
BstC8I	GCNNGC	6 cut(s)	77, 81, 189, 262, 266, 379
BstDEI	CTNAG	2 cut(s)	774, 985
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	6 cut(s)	316, 363, 433, 574, 757, 838
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	5 cut(s)	178, 202, 593, 627, 763
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	5 cut(s)	175, 199, 590, 624, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 378
BstNI	CCWGG	4 cut(s)	301, 565, 633, 830
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	7 cut(s)	299, 306, 372, 391, 563, 631, 828
BstSLI	GKGCMC	3 cut(s)	235, 542, 855
BstV1I	GCAGC	1 cut(s)	694
BsuRI	GGCC	3 cut(s)	372, 377, 391
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	6 cut(s)	316, 363, 433, 574, 757, 838
BtsIMutI	CAGTG	1 cut(s)	855
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	6 cut(s)	77, 81, 189, 262, 266, 379
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	3 cut(s)	260, 377, 697
Cfr13I	GGNCC	3 cut(s)	275, 370, 375
CpoI	CGGWCCG	1 cut(s)	275
Csp6I	GTAC	3 cut(s)	196, 205, 516
CspI	CGGWCCG	1 cut(s)	275
CviAII	CATG	4 cut(s)	85, 283, 367, 418
CviQI	GTAC	3 cut(s)	196, 205, 516
DdeI	CTNAG	2 cut(s)	774, 985
DpnI	GATC	5 cut(s)	177, 201, 592, 626, 762
DpnII	GATC	5 cut(s)	175, 199, 590, 624, 760
Eco130I	CCWWGG	2 cut(s)	410, 918
Eco24I	GRGCYC	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	783
Eco47I	GGWCC	1 cut(s)	275
EcoRII	CCWGG	4 cut(s)	299, 563, 631, 828
EcoRV	GATATC	1 cut(s)	783
EcoT14I	CCWWGG	2 cut(s)	410, 918
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	2 cut(s)	410, 918
FaeI	CATG	4 cut(s)	88, 286, 370, 421
FalI	AAGNNNNNCTT	2 cut(s)	926, 958
FatI	CATG	4 cut(s)	84, 282, 366, 417
FauI	CCCGC	3 cut(s)	257, 374, 389
Fnu4HI	GCNGC	3 cut(s)	126, 239, 683
FokI	GGATG	6 cut(s)	323, 370, 440, 581, 764, 845
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	3 cut(s)	126, 239, 683
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	3 cut(s)	126, 239, 683
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	372, 377, 391
HapII	CCGG	9 cut(s)	242, 261, 289, 308, 362, 373, 378, 392, 698
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	88, 286, 370, 421
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	977
HinfI	GANTC	3 cut(s)	245, 578, 948
HpaII	CCGG	9 cut(s)	242, 261, 289, 308, 362, 373, 378, 392, 698
HphI	GGTGA	2 cut(s)	470, 904
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	7 cut(s)	154, 279, 325, 350, 777, 801, 988
Hpy188III	TCNNGA	2 cut(s)	521, 745
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	11, 1024
HpyAV	CCTTC	3 cut(s)	217, 664, 936
HpyCH4III	ACNGT	3 cut(s)	275, 601, 850
HpyCH4IV	ACGT	1 cut(s)	1019
HpyCH4V	TGCA	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 378
HpyF3I	CTNAG	2 cut(s)	774, 985
HpySE526I	ACGT	1 cut(s)	1019
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	88, 286, 370, 421
HspAI	GCGC	1 cut(s)	453
KroI	GCCGGC	2 cut(s)	260, 377
KroNI	GCCGGC	2 cut(s)	262, 379
Kzo9I	GATC	5 cut(s)	175, 199, 590, 624, 760
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	1019
MaeIII	GTNAC	2 cut(s)	769, 806
MalI	GATC	5 cut(s)	177, 201, 592, 626, 762
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	5 cut(s)	175, 199, 590, 624, 760
MboII	GAAGA	6 cut(s)	17, 73, 562, 568, 790, 896
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	4 cut(s)	235, 465, 542, 855
MluCI	AATT	4 cut(s)	137, 609, 618, 859
MlyI	GAGTC	1 cut(s)	957
MmeI	TCCRAC	2 cut(s)	302, 617
MroNI	GCCGGC	2 cut(s)	260, 377
MseI	TTAA	3 cut(s)	170, 944, 1016
MspA1I	CMGCKG	1 cut(s)	820
MspCI	CTTAAG	1 cut(s)	943
MspI	CCGG	9 cut(s)	242, 261, 289, 308, 362, 373, 378, 392, 698
MspR9I	CCNGG	7 cut(s)	301, 308, 374, 393, 565, 633, 830
MunI	CAATTG	1 cut(s)	618
Mva1269I	GAATGC	3 cut(s)	46, 404, 912
MvaI	CCWGG	4 cut(s)	301, 565, 633, 830
MwoI	GCNNNNNNNGC	2 cut(s)	131, 378
NaeI	GCCGGC	2 cut(s)	262, 379
NciI	CCSGG	3 cut(s)	308, 374, 393
NdeII	GATC	5 cut(s)	175, 199, 590, 624, 760
NgoMIV	GCCGGC	2 cut(s)	260, 377
NlaIII	CATG	4 cut(s)	88, 286, 370, 421
NlaIV	GGNNCC	5 cut(s)	95, 234, 305, 541, 924
NmuCI	GTSAC	2 cut(s)	769, 806
NspI	RCATGY	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	765
PctI	GAATGC	3 cut(s)	46, 404, 912
PdiI	GCCGGC	2 cut(s)	262, 379
PfeI	GAWTC	2 cut(s)	245, 578
PflFI	GACNNNGTC	1 cut(s)	707
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	127, 240, 684
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
Psp6I	CCWGG	4 cut(s)	299, 563, 631, 828
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	4 cut(s)	299, 563, 631, 828
PspN4I	GGNNCC	5 cut(s)	95, 234, 305, 541, 924
PspPI	GGNCC	3 cut(s)	275, 370, 375
PsyI	GACNNNGTC	1 cut(s)	707
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	3 cut(s)	197, 206, 517
RsaNI	GTAC	3 cut(s)	196, 205, 516
Rsr2I	CGGWCCG	1 cut(s)	275
RsrII	CGGWCCG	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	170, 944, 1016
SatI	GCNGC	3 cut(s)	126, 239, 683
Sau3AI	GATC	5 cut(s)	175, 199, 590, 624, 760
Sau96I	GGNCC	3 cut(s)	275, 370, 375
SchI	GAGTC	1 cut(s)	957
ScrFI	CCNGG	7 cut(s)	301, 308, 374, 393, 565, 633, 830
SduI	GDGCHC	4 cut(s)	235, 465, 542, 855
SfaNI	GCATC	1 cut(s)	348
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	943
SmoI	CTYRAG	1 cut(s)	943
Sse9I	AATT	4 cut(s)	137, 609, 618, 859
SsiI	CCGC	7 cut(s)	126, 191, 236, 239, 264, 381, 396
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	7 cut(s)	299, 306, 372, 391, 563, 631, 828
StyI	CCWWGG	2 cut(s)	410, 918
TaaI	ACNGT	3 cut(s)	275, 601, 850
TaiI	ACGT	1 cut(s)	1022
TaqI	TCGA	2 cut(s)	9, 386
TasI	AATT	4 cut(s)	137, 609, 618, 859
TatI	WGTACW	1 cut(s)	515
TauI	GCSGC	2 cut(s)	128, 241
TfiI	GAWTC	2 cut(s)	245, 578
Tru1I	TTAA	3 cut(s)	170, 944, 1016
Tru9I	TTAA	3 cut(s)	170, 944, 1016
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	2 cut(s)	769, 806
TseI	GCWGC	1 cut(s)	682
Tsp45I	GTSAC	2 cut(s)	769, 806
TspDTI	ATGAA	3 cut(s)	101, 569, 897
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	855
Tth111I	GACNNNGTC	1 cut(s)	707
Van91I	CCANNNNNTGG	1 cut(s)	90
Vha464I	CTTAAG	1 cut(s)	943
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	137, 609
XceI	RCATGY	1 cut(s)	421
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.