Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

24763604 .. 24765476

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1167300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCCTACGAGGTATGTTTTGAGTGATCCCAGAAAGCGAGCGGTGTACGATCAGCAGGGCGAGGAGGGTTTGAGGAGAGGTGCAGCGCAGCCTCCTCATTCACCTGGGTCTGGCGGCATGAACGGCAGGTGCCCTGACCCATTCACGCAGTTTTTCGGGCCAGGGACCGGCAGGTCTCGGGTTACGGAGTCTGTGAAACCGGAAGAGATATTCTCGACGTTTTACGGCGGAGGGACGATAGGGGTAAATGGATTCAAGTCGTTTGCATGCACGGACTCAGGACCTGGAAATGGGCCGAGGAAAGCCGCGGCGATTGAGAGGACATTACCTTGTACTTTGGAGGAACTGTATAAGGGCGCCACCAAGAAGCTGAAGATTTCTAGGGATATTCTTGGTGCTAGTGGAAGAAAAAGCACAGTGGAGGAAGTTCTAACAATCGAGATCAAGCCAGGGTGGAAAAAGGGCACGAAAATCACTTTCCCAGAGAAAGGGCACGACACACGGCGAGGTGTTATACCAGCAGACATTGTCTTCATCATCGATGAGAATCCTCACGATGTTTTCAAGAGGGACGGGGACGATCTGATTGTCACTCGGAAGATTTCTCTCGCGGAGGCTCTGACGGGTCACACCGCGCAGCTGACAGCCCTAGACGGGAGAAATTTGAGTGTCTCTATTGATTCCATTATCAGCCAGACCCATGAAGAAGTGGTTAGAGGGGAGGGGATGCCTATCCCGAAGGAACAATCCAAGAAGGGGAACTTGATTGTCAAGTTTAGCCTCAAGTTCCCTAAGCTCACCTCGGAGCAGAAAACCGGCATCAGAATGTTGCTGACATCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

282

Amino Acids

30.58

Weight (kDa)

9.43

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	105 - 264	5.8e-40	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	844
AarI	CACCTGC	1 cut(s)	117
AasI	GACNNNNNNGTC	1 cut(s)	172
Acc36I	ACCTGC	2 cut(s)	117, 162
AccB1I	GGYRCC	2 cut(s)	129, 356
AccBSI	CCGCTC	1 cut(s)	41
AccII	CGCG	3 cut(s)	308, 611, 635
AciI	CCGC	7 cut(s)	41, 114, 228, 306, 308, 611, 633
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	2 cut(s)	47, 334
AfiI	CCNNNNNNNGG	6 cut(s)	110, 167, 290, 488, 654, 756
AgsI	TTSAA	2 cut(s)	256, 565
AjnI	CCWGG	4 cut(s)	103, 160, 283, 448
AluBI	AGCT	3 cut(s)	370, 640, 796
AluI	AGCT	3 cut(s)	370, 640, 796
Alw26I	GTCTC	2 cut(s)	180, 676
AlwI	GGATC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	177
AoxI	GGCC	2 cut(s)	158, 293
ApeKI	GCWGC	3 cut(s)	83, 88, 637
ApoI	RAATTY	1 cut(s)	661
AspLEI	GCGC	3 cut(s)	88, 359, 637
AspS9I	GGNCC	4 cut(s)	158, 165, 281, 293
AsuHPI	GGTGA	2 cut(s)	93, 790
AvaI	CYCGRG	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	165, 281
BaeGI	GKGCMC	3 cut(s)	134, 467, 495
BanI	GGYRCC	2 cut(s)	129, 356
BbsI	GAAGAC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	95, 100, 649
BceAI	ACGGC	3 cut(s)	139, 241, 518
BciT130I	CCWGG	4 cut(s)	105, 162, 285, 450
BcoDI	GTCTC	2 cut(s)	180, 676
BfaI	CTAG	3 cut(s)	381, 399, 650
BfoI	RGCGCY	1 cut(s)	360
BfuAI	ACCTGC	2 cut(s)	117, 162
BisI	GCNGC	6 cut(s)	84, 89, 115, 306, 309, 638
BlsI	GCNGC	6 cut(s)	85, 90, 116, 307, 310, 639
Bme1390I	CCNGG	4 cut(s)	105, 162, 285, 450
Bme18I	GGWCC	2 cut(s)	165, 281
BmeT110I	CYCGRG	1 cut(s)	177
BmgT120I	GGNCC	4 cut(s)	158, 165, 281, 293
BmiI	GGNNCC	3 cut(s)	131, 166, 358
BmrFI	CCNGG	4 cut(s)	105, 162, 285, 450
BmsI	GCATC	2 cut(s)	717, 828
BpiI	GAAGAC	1 cut(s)	523
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu10I	CCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	767
Bsa29I	ATCGAT	1 cut(s)	540
BsaBI	GATNNNNATC	2 cut(s)	546, 731
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	6 cut(s)	104, 161, 296, 306, 449, 801
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	6 cut(s)	110, 167, 290, 488, 654, 756
Bse118I	RCCGGY	2 cut(s)	167, 815
Bse8I	GATNNNNATC	2 cut(s)	546, 731
BseBI	CCWGG	4 cut(s)	105, 162, 285, 450
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	6 cut(s)	104, 161, 296, 306, 449, 801
BseGI	GGATG	1 cut(s)	732
BseJI	GATNNNNATC	2 cut(s)	546, 731
BseLI	CCNNNNNNNGG	6 cut(s)	110, 167, 290, 488, 654, 756
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	3 cut(s)	77, 84, 88
BseSI	GKGCMC	3 cut(s)	134, 467, 495
BseXI	GCAGC	3 cut(s)	95, 100, 649
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	3 cut(s)	308, 611, 635
BshFI	GGCC	2 cut(s)	160, 295
BshNI	GGYRCC	2 cut(s)	129, 356
BshVI	ATCGAT	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	168, 200, 816
BslFI	GGGAC	4 cut(s)	178, 247, 584, 590
BslI	CCNNNNNNNGG	6 cut(s)	110, 167, 290, 488, 654, 756
BsmAI	GTCTC	2 cut(s)	180, 676
BsmFI	GGGAC	4 cut(s)	178, 247, 584, 590
BsnI	GGCC	2 cut(s)	160, 295
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	134, 467, 495
Bsp143I	GATC	4 cut(s)	25, 49, 441, 580
BspACI	CCGC	7 cut(s)	41, 114, 228, 306, 308, 611, 633
BspANI	GGCC	2 cut(s)	160, 295
BspCNI	CTCAG	1 cut(s)	290
BspDI	ATCGAT	1 cut(s)	540
BspFNI	CGCG	3 cut(s)	308, 611, 635
BspLI	GGNNCC	3 cut(s)	131, 166, 358
BspMI	ACCTGC	2 cut(s)	117, 162
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	2 cut(s)	129, 356
BspTNI	GGTCTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	41
BsrFI	RCCGGY	2 cut(s)	167, 815
BssAI	RCCGGY	2 cut(s)	167, 815
BssECI	CCNNGG	6 cut(s)	104, 161, 296, 306, 449, 801
BssMI	GATC	4 cut(s)	25, 49, 441, 580
BssNI	GRCGYC	1 cut(s)	357
Bst2UI	CCWGG	4 cut(s)	105, 162, 285, 450
Bst4CI	ACNGT	2 cut(s)	348, 418
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	39, 268
BstDEI	CTNAG	2 cut(s)	277, 792
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	732
BstFNI	CGCG	3 cut(s)	308, 611, 635
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	3 cut(s)	88, 359, 637
BstKTI	GATC	4 cut(s)	28, 52, 444, 583
BstMAI	GTCTC	2 cut(s)	180, 676
BstMBI	GATC	4 cut(s)	25, 49, 441, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNI	CCWGG	4 cut(s)	105, 162, 285, 450
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	4 cut(s)	103, 160, 283, 448
BstSLI	GKGCMC	3 cut(s)	134, 467, 495
BstUI	CGCG	3 cut(s)	308, 611, 635
BstV1I	GCAGC	3 cut(s)	95, 100, 649
BstV2I	GAAGAC	1 cut(s)	523
Bsu15I	ATCGAT	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	160, 295
BsuTUI	ATCGAT	1 cut(s)	540
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	732
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	2 cut(s)	117, 162
Cac8I	GCNNGC	2 cut(s)	39, 268
CaiI	CAGNNNCTG	1 cut(s)	284
CfoI	GCGC	3 cut(s)	88, 359, 637
Cfr10I	RCCGGY	2 cut(s)	167, 815
Cfr13I	GGNCC	4 cut(s)	158, 165, 281, 293
Cfr42I	CCGCGG	1 cut(s)	309
ClaI	ATCGAT	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	46, 333
CviAII	CATG	3 cut(s)	118, 267, 701
CviQI	GTAC	2 cut(s)	46, 333
DdeI	CTNAG	2 cut(s)	277, 792
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	4 cut(s)	27, 51, 443, 582
DpnII	GATC	4 cut(s)	25, 49, 441, 580
DrdI	GACNNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	165, 281
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	4 cut(s)	103, 160, 283, 448
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
FaeI	CATG	3 cut(s)	121, 270, 704
FaiI	YATR	7 cut(s)	15, 119, 268, 351, 515, 702, 844
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	4 cut(s)	178, 247, 584, 590
FatI	CATG	3 cut(s)	117, 266, 700
Fnu4HI	GCNGC	6 cut(s)	84, 89, 115, 306, 309, 638
FokI	GGATG	1 cut(s)	739
Fsp4HI	GCNGC	6 cut(s)	84, 89, 115, 306, 309, 638
FspBI	CTAG	3 cut(s)	381, 399, 650
GlaI	GCGC	3 cut(s)	87, 358, 636
GluI	GCNGC	6 cut(s)	84, 89, 115, 306, 309, 638
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	160, 295
HapII	CCGG	3 cut(s)	168, 200, 816
HhaI	GCGC	3 cut(s)	88, 359, 637
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	121, 270, 704
Hin6I	GCGC	3 cut(s)	86, 357, 635
HinP1I	GCGC	3 cut(s)	86, 357, 635
HinfI	GANTC	5 cut(s)	188, 252, 275, 547, 680
HpaII	CCGG	3 cut(s)	168, 200, 816
HphI	GGTGA	2 cut(s)	93, 790
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	5 cut(s)	585, 597, 621, 805, 824
Hpy188III	TCNNGA	6 cut(s)	214, 279, 439, 554, 565, 736
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	733, 748
HpyCH4III	ACNGT	2 cut(s)	348, 418
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	3 cut(s)	83, 266, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	2 cut(s)	277, 792
HpySE526I	ACGT	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	121, 270, 704
HspAI	GCGC	3 cut(s)	86, 357, 635
KasI	GGCGCC	1 cut(s)	356
KspI	CCGCGG	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	25, 49, 441, 580
LmnI	GCTCC	1 cut(s)	805
Lsp1109I	GCAGC	3 cut(s)	95, 100, 649
LweI	GCATC	2 cut(s)	717, 828
MaeI	CTAG	3 cut(s)	381, 399, 650
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	181, 589, 626
MalI	GATC	4 cut(s)	27, 51, 443, 582
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	4 cut(s)	25, 49, 441, 580
MboII	GAAGA	6 cut(s)	215, 385, 417, 523, 610, 716
MhlI	GDGCHC	3 cut(s)	134, 467, 495
MluCI	AATT	1 cut(s)	661
Mly113I	GGCGCC	1 cut(s)	357
MlyI	GAGTC	2 cut(s)	197, 269
MslI	CAYNNNNRTG	1 cut(s)	824
MspA1I	CMGCKG	2 cut(s)	308, 640
MspI	CCGG	3 cut(s)	168, 200, 816
MspR9I	CCNGG	4 cut(s)	105, 162, 285, 450
MvaI	CCWGG	4 cut(s)	105, 162, 285, 450
MvnI	CGCG	3 cut(s)	308, 611, 635
MwoI	GCNNNNNNNGC	1 cut(s)	123
NarI	GGCGCC	1 cut(s)	357
NdeII	GATC	4 cut(s)	25, 49, 441, 580
NlaIII	CATG	3 cut(s)	121, 270, 704
NlaIV	GGNNCC	3 cut(s)	131, 166, 358
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	2 cut(s)	589, 626
NspI	RCATGY	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	117
PfeI	GAWTC	3 cut(s)	252, 547, 680
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	6 cut(s)	85, 90, 116, 307, 310, 639
PleI	GAGTC	2 cut(s)	196, 269
PluTI	GGCGCC	1 cut(s)	360
PpsI	GAGTC	2 cut(s)	196, 269
PpuMI	RGGWCCY	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	844
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	4 cut(s)	103, 160, 283, 448
PspGI	CCWGG	4 cut(s)	103, 160, 283, 448
PspN4I	GGNNCC	3 cut(s)	131, 166, 358
PspPI	GGNCC	4 cut(s)	158, 165, 281, 293
PspPPI	RGGWCCY	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	284
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	2 cut(s)	47, 334
RsaNI	GTAC	2 cut(s)	46, 333
RseI	CAYNNNNRTG	1 cut(s)	824
SacII	CCGCGG	1 cut(s)	309
SatI	GCNGC	6 cut(s)	84, 89, 115, 306, 309, 638
Sau3AI	GATC	4 cut(s)	25, 49, 441, 580
Sau96I	GGNCC	4 cut(s)	158, 165, 281, 293
SchI	GAGTC	2 cut(s)	197, 269
ScrFI	CCNGG	4 cut(s)	105, 162, 285, 450
SduI	GDGCHC	3 cut(s)	134, 467, 495
SfaNI	GCATC	2 cut(s)	717, 828
SfoI	GGCGCC	1 cut(s)	358
Sfr303I	CCGCGG	1 cut(s)	309
SgrBI	CCGCGG	1 cut(s)	309
SinI	GGWCC	2 cut(s)	165, 281
SmiMI	CAYNNNNRTG	1 cut(s)	824
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	1 cut(s)	661
SsiI	CCGC	7 cut(s)	41, 114, 228, 306, 308, 611, 633
SspDI	GGCGCC	1 cut(s)	356
SspMI	CTAG	3 cut(s)	381, 399, 650
StyD4I	CCNGG	4 cut(s)	103, 160, 283, 448
TaaI	ACNGT	2 cut(s)	348, 418
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	3 cut(s)	215, 438, 540
TasI	AATT	1 cut(s)	661
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	3 cut(s)	117, 308, 311
TfiI	GAWTC	3 cut(s)	252, 547, 680
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	2 cut(s)	589, 626
TseI	GCWGC	3 cut(s)	83, 88, 637
Tsp45I	GTSAC	2 cut(s)	589, 626
TspDTI	ATGAA	3 cut(s)	134, 523, 717
TspGWI	ACGGA	2 cut(s)	200, 287
TspRI	CASTG	1 cut(s)	423
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	165, 281
XapI	RAATTY	1 cut(s)	661
XceI	RCATGY	1 cut(s)	270
XspI	CTAG	3 cut(s)	381, 399, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.