Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

24203956 .. 24204575

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1153900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGCCGTGCAACCGGAAGAGATATTCTCGAAGTTTTTCGGATTCGAGGACTGGGGACCCGGAAATGGGCCGAAGAAAGCAGCGGCCATTGTGAGGACGTTGCCTTGTACTTTGGAGGAGCTGTACAATGGCGCCACCAAGAAGCTGAAGATCTCCAGGGATGTTCTTGGTGCCAGCGGTTTTTTTATTGGGGTTTCTCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

69

Amino Acids

7.38

Weight (kDa)

7.87

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 170
AciI	CCGC	2 cut(s)	83, 177
AcoI	YGGCCR	2 cut(s)	3, 84
AcuI	CTGAAG	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	109, 125
AfiI	CCNNNNNNNGG	3 cut(s)	65, 66, 93
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	2 cut(s)	121, 145
AluI	AGCT	2 cut(s)	121, 145
AoxI	GGCC	3 cut(s)	3, 68, 84
ApeKI	GCWGC	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	56, 68
AsuC2I	CCSGG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	131, 170
BbvI	GCAGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	157
BcnI	CCSGG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	135
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
Bme1390I	CCNGG	2 cut(s)	60, 157
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	56, 68
BmiI	GGNNCC	4 cut(s)	57, 58, 133, 172
BmrFI	CCNGG	2 cut(s)	60, 157
BmrI	ACTGGG	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 66, 93
Bse1I	ACTGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	3 cut(s)	65, 66, 93
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	92
BshFI	GGCC	3 cut(s)	5, 70, 86
BshNI	GGYRCC	2 cut(s)	131, 170
BsiSI	CCGG	2 cut(s)	14, 60
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	3 cut(s)	65, 66, 93
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	5, 70, 86
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	2 cut(s)	83, 177
BspANI	GGCC	3 cut(s)	5, 70, 86
BspLI	GGNNCC	4 cut(s)	57, 58, 133, 172
BspT107I	GGYRCC	2 cut(s)	131, 170
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	150
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	175
BstF5I	GGATG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	58, 155
BstV1I	GCAGC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	5, 70, 86
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	56, 68
Csp6I	GTAC	2 cut(s)	108, 124
CviJI	RGCY	5 cut(s)	5, 70, 86, 121, 145
CviKI_1	RGCY	5 cut(s)	5, 70, 86, 121, 145
CviQI	GTAC	2 cut(s)	108, 124
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
EaeI	YGGCCR	2 cut(s)	3, 84
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaqI	GGGAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	81, 84
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	81, 84
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	81, 84
GsuI	CTGGAG	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	5, 70, 86
HapII	CCGG	2 cut(s)	14, 60
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	2 cut(s)	14, 60
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	132
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
KflI	GGGWCCC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	6 cut(s)	27, 37, 73, 142, 169, 187
Lsp1109I	GCAGC	1 cut(s)	92
MaeII	ACGT	1 cut(s)	98
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	3 cut(s)	29, 85, 160
MflI	RGATCY	1 cut(s)	150
Mly113I	GGCGCC	1 cut(s)	132
MnlI	CCTC	3 cut(s)	40, 87, 109
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	1 cut(s)	205
MspA1I	CMGCKG	2 cut(s)	83, 177
MspI	CCGG	2 cut(s)	14, 60
MspR9I	CCNGG	2 cut(s)	60, 157
MvaI	CCWGG	1 cut(s)	157
NarI	GGCGCC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	150
NlaIV	GGNNCC	4 cut(s)	57, 58, 133, 172
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	82, 85
PluTI	GGCGCC	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	4 cut(s)	57, 58, 133, 172
PspPI	GGNCC	2 cut(s)	56, 68
PspPPI	RGGWCCY	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	2 cut(s)	109, 125
RsaNI	GTAC	2 cut(s)	108, 124
SaqAI	TTAA	1 cut(s)	205
SatI	GCNGC	2 cut(s)	81, 84
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	56, 68
ScrFI	CCNGG	2 cut(s)	60, 157
SetI	ASST	3 cut(s)	101, 123, 147
SfoI	GGCGCC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	56
SsiI	CCGC	2 cut(s)	83, 177
SspDI	GGCGCC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	58, 155
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	2 cut(s)	29, 45
TatI	WGTACW	2 cut(s)	107, 123
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	205
Tru9I	TTAA	1 cut(s)	205
TseI	GCWGC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.