Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

18332449 .. 18333491

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTCCGTCGATTACTACAAGCTTCTTCAAGTTCAACGAAACGCCAGAGACGTGAGGAAAGCGGTCGAGGCCAAGCTCAATCTAATCAACGATGCCTACGAGACCGGCATGGCCCGGCTTACGTCTCAGGTTATGGAGTCCGTGAATCCGGAAGTGATATTCTCGACGTTTTTAGTCGGAGGGACGATAGGGGAAAATGGATTCCAGTGGTTTGAATGCACGGACTCAGGACCTGGAAATGGGCCGAGGAAAGCCGCGGCGATTGAGAGGACATCATTGCCTTGTACTTTGGAGGAACTGTATAAGGGCGCCACCAAGAAGCTGAAGATTTATAGGGATGTTCTTTGTGCTAGTGGAAGAAAAATCACAGTGGAGGAAGTTCTAACAATTGAGATCAAGCCAGGGTGGAAAAAGGGCACGAAAATCACTTTCCCAGAGAAAGGGCACGACACACGGCGAGGTGTGATACCAGCAGACATTGTCTTCATCGTCGATGAGAAGCCTCACGGTGTTTACAAGAGGGACGGGGACGATCTGATTGTCACTCAGACGATCTCTCTAGCGGAGGCTCTGACGGGTCACACCGCGCTGCTGACAGCCCTGGACGGGAGAAAATTGAGCGTCTCCATTGGTTCCATTATCAGCCAGACCCATGAAGAAGTGGTTATAGGGGAAGGGATGCCTATCCAGAAGGAACAATCCAAGAAGGGGAACTTGATTGTTAAGTTTAGCGTCAAGTTCCCCAAGCTCACCCCGGAGCAGAAAACCGGCATCAGAATGTTGCTTTTTATTTTTATTTTATTATTTTTTTATTTGGAAAACCTCGACGGTACGAGAGAAAAGCATCATAATGTTGCTGACATCTTTGTAAACGCCGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

295

Amino Acids

32.67

Weight (kDa)

8.53

Isoelectric Point (pI)

26.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccII	CGCG	2 cut(s)	257, 587
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	5 cut(s)	62, 255, 257, 563, 585
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	2 cut(s)	286, 832
AfiI	CCNNNNNNNGG	4 cut(s)	239, 440, 606, 708
AgsI	TTSAA	3 cut(s)	29, 35, 215
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	3 cut(s)	232, 400, 600
AluBI	AGCT	4 cut(s)	22, 76, 322, 748
AluI	AGCT	4 cut(s)	22, 76, 322, 748
Alw26I	GTCTC	4 cut(s)	42, 95, 129, 628
AlwNI	CAGNNNCTG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	3 cut(s)	69, 111, 242
ApeKI	GCWGC	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	311, 589
AspS9I	GGNCC	3 cut(s)	112, 230, 242
AsuC2I	CCSGG	2 cut(s)	115, 755
AsuHPI	GGTGA	1 cut(s)	742
AvaII	GGWCC	1 cut(s)	230
BaeGI	GKGCMC	2 cut(s)	419, 447
BanI	GGYRCC	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	576
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	3 cut(s)	234, 402, 602
BcnI	CCSGG	2 cut(s)	115, 755
BcoDI	GTCTC	4 cut(s)	42, 95, 129, 628
BfaI	CTAG	2 cut(s)	351, 560
BfoI	RGCGCY	1 cut(s)	312
BisI	GCNGC	3 cut(s)	255, 258, 590
BlsI	GCNGC	3 cut(s)	256, 259, 591
Bme1390I	CCNGG	5 cut(s)	115, 234, 402, 602, 755
Bme18I	GGWCC	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	52
BmgT120I	GGNCC	3 cut(s)	112, 230, 242
BmiI	GGNNCC	2 cut(s)	310, 634
BmrFI	CCNGG	5 cut(s)	115, 234, 402, 602, 755
BmsI	GCATC	4 cut(s)	82, 669, 780, 853
BpiI	GAAGAC	1 cut(s)	475
BpuMI	CCSGG	2 cut(s)	115, 755
BsaBI	GATNNNNATC	1 cut(s)	683
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	5 cut(s)	245, 255, 401, 600, 753
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 440, 606, 708
Bse118I	RCCGGY	3 cut(s)	104, 767, 875
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	683
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	3 cut(s)	234, 402, 602
BseDI	CCNNGG	5 cut(s)	245, 255, 401, 600, 753
BseGI	GGATG	2 cut(s)	343, 684
BseJI	GATNNNNATC	1 cut(s)	683
BseLI	CCNNNNNNNGG	4 cut(s)	239, 440, 606, 708
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	3 cut(s)	140, 240, 560
BseNI	ACTGG	1 cut(s)	205
BseSI	GKGCMC	2 cut(s)	419, 447
BseXI	GCAGC	1 cut(s)	576
Bsh1236I	CGCG	2 cut(s)	257, 587
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	71, 113, 244
BshNI	GGYRCC	1 cut(s)	308
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	6 cut(s)	105, 115, 149, 755, 768, 876
BslFI	GGGAC	3 cut(s)	196, 536, 542
BslI	CCNNNNNNNGG	4 cut(s)	239, 440, 606, 708
BsmAI	GTCTC	4 cut(s)	42, 95, 129, 628
BsmBI	CGTCTC	3 cut(s)	42, 129, 628
BsmFI	GGGAC	3 cut(s)	196, 536, 542
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	71, 113, 244
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	419, 447
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	393, 532, 552
BspACI	CCGC	5 cut(s)	62, 255, 257, 563, 585
BspANI	GGCC	3 cut(s)	71, 113, 244
BspCNI	CTCAG	3 cut(s)	139, 239, 559
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	2 cut(s)	257, 587
BspLI	GGNNCC	2 cut(s)	310, 634
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	275
BsrFI	RCCGGY	3 cut(s)	104, 767, 875
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	3 cut(s)	104, 767, 875
BssECI	CCNNGG	5 cut(s)	245, 255, 401, 600, 753
BssMI	GATC	3 cut(s)	393, 532, 552
BssNI	GRCGYC	1 cut(s)	309
Bst2UI	CCWGG	3 cut(s)	234, 402, 602
Bst4CI	ACNGT	4 cut(s)	300, 370, 509, 830
BstACI	GRCGYC	1 cut(s)	309
BstDEI	CTNAG	3 cut(s)	126, 226, 546
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	343, 684
BstFNI	CGCG	2 cut(s)	257, 587
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	311, 589
BstKTI	GATC	3 cut(s)	396, 535, 555
BstMAI	GTCTC	4 cut(s)	42, 95, 129, 628
BstMBI	GATC	3 cut(s)	393, 532, 552
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	3 cut(s)	234, 402, 602
BstSCI	CCNGG	5 cut(s)	113, 232, 400, 600, 753
BstSLI	GKGCMC	2 cut(s)	419, 447
BstUI	CGCG	2 cut(s)	257, 587
BstV1I	GCAGC	1 cut(s)	576
BstV2I	GAAGAC	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	71, 113, 244
BtgI	CCRYGG	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	343, 684
BtsIMutI	CAGTG	2 cut(s)	212, 375
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	2 cut(s)	311, 589
Cfr10I	RCCGGY	3 cut(s)	104, 767, 875
Cfr13I	GGNCC	3 cut(s)	112, 230, 242
Cfr42I	CCGCGG	1 cut(s)	258
CseI	GACGC	2 cut(s)	610, 721
Csp6I	GTAC	2 cut(s)	285, 831
CviAII	CATG	2 cut(s)	109, 653
CviQI	GTAC	2 cut(s)	285, 831
DdeI	CTNAG	3 cut(s)	126, 226, 546
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	3 cut(s)	395, 534, 554
DpnII	GATC	3 cut(s)	393, 532, 552
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	3 cut(s)	232, 400, 600
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
Esp3I	CGTCTC	3 cut(s)	42, 129, 628
FaeI	CATG	2 cut(s)	112, 656
FaiI	YATR	7 cut(s)	110, 134, 303, 333, 654, 668, 849
FalI	AAGNNNNNCTT	2 cut(s)	698, 730
FaqI	GGGAC	3 cut(s)	196, 536, 542
FatI	CATG	2 cut(s)	108, 652
Fnu4HI	GCNGC	3 cut(s)	255, 258, 590
FokI	GGATG	2 cut(s)	350, 691
Fsp4HI	GCNGC	3 cut(s)	255, 258, 590
FspBI	CTAG	2 cut(s)	351, 560
GlaI	GCGC	2 cut(s)	310, 588
GluI	GCNGC	3 cut(s)	255, 258, 590
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	71, 113, 244
HapII	CCGG	6 cut(s)	105, 115, 149, 755, 768, 876
HgaI	GACGC	2 cut(s)	610, 721
HhaI	GCGC	2 cut(s)	311, 589
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	112, 656
Hin6I	GCGC	2 cut(s)	309, 587
HinP1I	GCGC	2 cut(s)	309, 587
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	137, 145, 201, 224
HpaII	CCGG	6 cut(s)	105, 115, 149, 755, 768, 876
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	2 cut(s)	514, 871
Hpy188I	TCNGA	5 cut(s)	179, 537, 549, 573, 776
Hpy188III	TCNNGA	4 cut(s)	149, 163, 228, 688
Hpy8I	GTNNAC	2 cut(s)	514, 871
Hpy99I	CGWCG	4 cut(s)	11, 169, 494, 830
HpyAV	CCTTC	3 cut(s)	668, 685, 700
HpyCH4III	ACNGT	4 cut(s)	300, 370, 509, 830
HpyCH4IV	ACGT	3 cut(s)	51, 122, 167
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	126, 226, 546
HpySE526I	ACGT	3 cut(s)	51, 122, 167
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	112, 656
HspAI	GCGC	2 cut(s)	309, 587
KasI	GGCGCC	1 cut(s)	308
Kpn2I	TCCGGA	1 cut(s)	148
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	393, 532, 552
LmnI	GCTCC	1 cut(s)	757
Lsp1109I	GCAGC	1 cut(s)	576
LweI	GCATC	4 cut(s)	82, 669, 780, 853
MaeI	CTAG	2 cut(s)	351, 560
MaeII	ACGT	3 cut(s)	51, 122, 167
MaeIII	GTNAC	2 cut(s)	541, 578
MalI	GATC	3 cut(s)	395, 534, 554
MboI	GATC	3 cut(s)	393, 532, 552
MboII	GAAGA	5 cut(s)	17, 337, 369, 475, 668
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	419, 447
MluCI	AATT	2 cut(s)	387, 614
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	146, 218
MmeI	TCCRAC	1 cut(s)	157
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	1 cut(s)	723
MslI	CAYNNNNRTG	2 cut(s)	776, 849
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	6 cut(s)	105, 115, 149, 755, 768, 876
MspR9I	CCNGG	5 cut(s)	115, 234, 402, 602, 755
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	221
MvaI	CCWGG	3 cut(s)	234, 402, 602
MvnI	CGCG	2 cut(s)	257, 587
MwoI	GCNNNNNNNGC	1 cut(s)	68
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	2 cut(s)	115, 755
NdeII	GATC	3 cut(s)	393, 532, 552
NlaIII	CATG	2 cut(s)	112, 656
NlaIV	GGNNCC	2 cut(s)	310, 634
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	541, 578
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 96
PctI	GAATGC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	145, 201
PflFI	GACNNNGTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	256, 259, 591
PleI	GAGTC	2 cut(s)	145, 218
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	2 cut(s)	145, 218
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	3 cut(s)	232, 400, 600
PspGI	CCWGG	3 cut(s)	232, 400, 600
PspN4I	GGNNCC	2 cut(s)	310, 634
PspPI	GGNCC	3 cut(s)	112, 230, 242
PspPPI	RGGWCCY	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	479
RsaI	GTAC	2 cut(s)	286, 832
RsaNI	GTAC	2 cut(s)	285, 831
RseI	CAYNNNNRTG	2 cut(s)	776, 849
SacII	CCGCGG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	3 cut(s)	255, 258, 590
Sau3AI	GATC	3 cut(s)	393, 532, 552
Sau96I	GGNCC	3 cut(s)	112, 230, 242
SchI	GAGTC	2 cut(s)	146, 218
ScrFI	CCNGG	5 cut(s)	115, 234, 402, 602, 755
SduI	GDGCHC	2 cut(s)	419, 447
SfaNI	GCATC	4 cut(s)	82, 669, 780, 853
SfoI	GGCGCC	1 cut(s)	310
Sfr303I	CCGCGG	1 cut(s)	258
SgrBI	CCGCGG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	776, 849
Sse9I	AATT	2 cut(s)	387, 614
SsiI	CCGC	5 cut(s)	62, 255, 257, 563, 585
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	2 cut(s)	351, 560
StyD4I	CCNGG	5 cut(s)	113, 232, 400, 600, 753
TaaI	ACNGT	4 cut(s)	300, 370, 509, 830
TaiI	ACGT	3 cut(s)	54, 125, 170
TaqI	TCGA	5 cut(s)	9, 66, 164, 492, 825
TasI	AATT	2 cut(s)	387, 614
TatI	WGTACW	1 cut(s)	284
TauI	GCSGC	2 cut(s)	257, 260
TfiI	GAWTC	2 cut(s)	145, 201
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	2 cut(s)	212, 375
TseFI	GTSAC	2 cut(s)	541, 578
TseI	GCWGC	1 cut(s)	589
Tsp45I	GTSAC	2 cut(s)	541, 578
TspDTI	ATGAA	2 cut(s)	475, 669
TspGWI	ACGGA	2 cut(s)	130, 236
TspRI	CASTG	2 cut(s)	212, 375
Tth111I	GACNNNGTC	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	230
XspI	CTAG	2 cut(s)	351, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.