Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

16784238 .. 16785489

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCGTCGATTACTATAAGCTTCTTCAAGTTCAGCGAAACGCCAGAGGTGACGACTTGAGGAAAGCCGCCGAGGCCAAGCTCAACCTAATCAACGATGCCTACGAGGTTCTGAGTGATCCCATAAAGCGAGCGGTGTACGATCAGCACGGCGAGGAGGGTCTGAAGAGAGAGGCAGCGACGCCTCCTGATTCGCCCGGGTCGACCCGCTTGAACTTCACGGACTTTTTCGGGGCAGGAGCCTGGGGGTCTCGGGTCAAGGAGACCCGGCAACCGGAAGAGATATTCTCGACGTTTTTCGAAGGTAGACCGATGAGGGAAGATGTATTCCAGTCGTTTGGATTCGCGGACTCGGGACCTGGAAATGGGCCGAGGAAAGCAGCGGCCATTGAAAGGACGTTGCCTTGTACTTTGGAGGAGCTGTACAAGGGCGCCACCAAGAAGCTGAAGATCTTCAGGGATGTTCTTGGTGCTAGCGGGAAAAAGAAAAAGCACGGTGGAAGAAGTTCTGACAATCGAGATCAAGCCGGGATGGAAAAAGGGCACAAAGATCACTTTCCAAGAGAAAGGGCACGACACACAGCGAGGTGTGATACCAGCAGACATTGTCTTCATCGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

208

Amino Acids

23.32

Weight (kDa)

9.53

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccBSI	CCGCTC	1 cut(s)	134
AccI	GTMKAC	2 cut(s)	203, 307
AccII	CGCG	1 cut(s)	347
AciI	CCGC	6 cut(s)	69, 134, 208, 347, 383, 477
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	2 cut(s)	3, 384
AcuI	CTGAAG	3 cut(s)	185, 439, 467
AcyI	GRCGYC	2 cut(s)	182, 432
AfaI	GTAC	3 cut(s)	140, 409, 425
AfiI	CCNNNNNNNGG	3 cut(s)	274, 365, 393
AgsI	TTSAA	3 cut(s)	29, 214, 392
AjnI	CCWGG	2 cut(s)	242, 358
AluBI	AGCT	4 cut(s)	22, 82, 421, 445
AluI	AGCT	4 cut(s)	22, 82, 421, 445
Alw26I	GTCTC	2 cut(s)	255, 257
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	3 cut(s)	197, 252, 352
AoxI	GGCC	4 cut(s)	3, 75, 368, 384
ApeKI	GCWGC	2 cut(s)	176, 380
Asp700I	GAANNNNTTC	2 cut(s)	452, 505
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	356, 368
AsuC2I	CCSGG	4 cut(s)	198, 199, 268, 529
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	300
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	3 cut(s)	197, 252, 352
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	2 cut(s)	546, 574
BanI	GGYRCC	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	602
BbvI	GCAGC	2 cut(s)	188, 392
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	2 cut(s)	244, 360
BcnI	CCSGG	4 cut(s)	198, 199, 268, 529
BcoDI	GTCTC	2 cut(s)	255, 257
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	4 cut(s)	69, 177, 381, 384
BlsI	GCNGC	4 cut(s)	70, 178, 382, 385
Bme1390I	CCNGG	6 cut(s)	198, 199, 244, 268, 360, 529
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	3 cut(s)	197, 252, 352
BmgT120I	GGNCC	2 cut(s)	356, 368
BmiI	GGNNCC	3 cut(s)	241, 357, 433
BmrFI	CCNGG	6 cut(s)	198, 199, 244, 268, 360, 529
BmsI	GCATC	1 cut(s)	88
BmtI	GCTAGC	1 cut(s)	477
BpiI	GAAGAC	1 cut(s)	602
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu14I	TTCGAA	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	4 cut(s)	198, 199, 268, 529
BsaHI	GRCGYC	2 cut(s)	182, 432
BsaI	GGTCTC	2 cut(s)	255, 257
BsaJI	CCNNGG	4 cut(s)	72, 197, 243, 371
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 365, 393
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	244, 360
BseDI	CCNNGG	4 cut(s)	72, 197, 243, 371
BseGI	GGATG	2 cut(s)	466, 537
BseLI	CCNNNNNNNGG	3 cut(s)	274, 365, 393
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	170, 431
BseSI	GKGCMC	2 cut(s)	546, 574
BseXI	GCAGC	2 cut(s)	188, 392
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	4 cut(s)	5, 77, 370, 386
BshNI	GGYRCC	1 cut(s)	431
BsiHKCI	CYCGRG	3 cut(s)	197, 252, 352
BsiSI	CCGG	4 cut(s)	198, 268, 275, 528
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	274, 365, 393
BsmAI	GTCTC	2 cut(s)	255, 257
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	4 cut(s)	5, 77, 370, 386
Bso31I	GGTCTC	2 cut(s)	255, 257
BsoBI	CYCGRG	3 cut(s)	197, 252, 352
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	546, 574
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	5 cut(s)	118, 142, 450, 520, 550
BspACI	CCGC	6 cut(s)	69, 134, 208, 347, 383, 477
BspANI	GGCC	4 cut(s)	5, 77, 370, 386
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	3 cut(s)	241, 357, 433
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	113
BspT104I	TTCGAA	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	255, 257
BsrBI	CCGCTC	1 cut(s)	134
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	4 cut(s)	72, 197, 243, 371
BssMI	GATC	5 cut(s)	118, 142, 450, 520, 550
BssNI	GRCGYC	2 cut(s)	182, 432
Bst2UI	CCWGG	2 cut(s)	244, 360
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	2 cut(s)	161, 273
BstACI	GRCGYC	2 cut(s)	182, 432
BstAUI	TGTACA	1 cut(s)	423
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	132, 475
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	466, 537
BstFNI	CGCG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	5 cut(s)	121, 145, 453, 523, 553
BstMAI	GTCTC	2 cut(s)	255, 257
BstMBI	GATC	5 cut(s)	118, 142, 450, 520, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	2 cut(s)	244, 360
BstSCI	CCNGG	6 cut(s)	196, 197, 242, 266, 358, 527
BstSLI	GKGCMC	2 cut(s)	546, 574
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	2 cut(s)	188, 392
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	4 cut(s)	5, 77, 370, 386
BtsCI	GGATG	2 cut(s)	466, 537
Cac8I	GCNNGC	2 cut(s)	132, 475
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	356, 368
Cfr9I	CCCGGG	1 cut(s)	197
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	139, 408, 424
CviQI	GTAC	3 cut(s)	139, 408, 424
DdeI	CTNAG	1 cut(s)	113
DinI	GGCGCC	1 cut(s)	433
DpnI	GATC	5 cut(s)	120, 144, 452, 522, 552
DpnII	GATC	5 cut(s)	118, 142, 450, 520, 550
EaeI	YGGCCR	2 cut(s)	3, 384
Eam1104I	CTCTTC	2 cut(s)	161, 273
EarI	CTCTTC	2 cut(s)	161, 273
Eco31I	GGTCTC	2 cut(s)	255, 257
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	3 cut(s)	185, 439, 467
Eco88I	CYCGRG	3 cut(s)	197, 252, 352
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	242, 358
EgeI	GGCGCC	1 cut(s)	433
EheI	GGCGCC	1 cut(s)	433
FaiI	YATR	2 cut(s)	18, 125
FaqI	GGGAC	1 cut(s)	369
FauI	CCCGC	2 cut(s)	215, 470
FblI	GTMKAC	2 cut(s)	203, 307
Fnu4HI	GCNGC	4 cut(s)	69, 177, 381, 384
FokI	GGATG	2 cut(s)	473, 544
Fsp4HI	GCNGC	4 cut(s)	69, 177, 381, 384
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	4 cut(s)	69, 177, 381, 384
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	4 cut(s)	5, 77, 370, 386
HapII	CCGG	4 cut(s)	198, 268, 275, 528
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	2 cut(s)	182, 432
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	191, 342, 350
HpaII	CCGG	4 cut(s)	198, 268, 275, 528
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	139, 204, 308
Hpy188I	TCNGA	3 cut(s)	114, 165, 511
Hpy188III	TCNNGA	4 cut(s)	188, 289, 354, 518
Hpy8I	GTNNAC	3 cut(s)	139, 204, 308
Hpy99I	CGWCG	4 cut(s)	11, 184, 295, 621
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	2 cut(s)	293, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	2 cut(s)	293, 398
Hsp92I	GRCGYC	2 cut(s)	182, 432
HspAI	GCGC	1 cut(s)	432
KasI	GGCGCC	1 cut(s)	431
Kzo9I	GATC	5 cut(s)	118, 142, 450, 520, 550
LmnI	GCTCC	2 cut(s)	239, 418
Lsp1109I	GCAGC	2 cut(s)	188, 392
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	2 cut(s)	293, 398
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	5 cut(s)	120, 144, 452, 522, 552
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	5 cut(s)	118, 142, 450, 520, 550
MboII	GAAGA	8 cut(s)	17, 178, 290, 332, 445, 460, 513, 602
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	2 cut(s)	546, 574
Mly113I	GGCGCC	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	344
MroXI	GAANNNNTTC	2 cut(s)	452, 505
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	4 cut(s)	198, 268, 275, 528
MspR9I	CCNGG	6 cut(s)	198, 199, 244, 268, 360, 529
MvaI	CCWGG	2 cut(s)	244, 360
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	74
NarI	GGCGCC	1 cut(s)	432
NciI	CCSGG	4 cut(s)	198, 199, 268, 529
NdeII	GATC	5 cut(s)	118, 142, 450, 520, 550
NheI	GCTAGC	1 cut(s)	473
NlaIV	GGNNCC	3 cut(s)	241, 357, 433
NmeAIII	GCCGAG	2 cut(s)	97, 396
NmuCI	GTSAC	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 200
PdmI	GAANNNNTTC	2 cut(s)	452, 505
PfeI	GAWTC	2 cut(s)	191, 342
PflFI	GACNNNGTC	1 cut(s)	606
PkrI	GCNGC	4 cut(s)	70, 178, 382, 385
PleI	GAGTC	1 cut(s)	344
PluTI	GGCGCC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	344
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	242, 358
PspGI	CCWGG	2 cut(s)	242, 358
PspN4I	GGNNCC	3 cut(s)	241, 357, 433
PspPI	GGNCC	2 cut(s)	356, 368
PspPPI	RGGWCCY	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	450
PsyI	GACNNNGTC	1 cut(s)	606
RsaI	GTAC	3 cut(s)	140, 409, 425
RsaNI	GTAC	3 cut(s)	139, 408, 424
SalI	GTCGAC	1 cut(s)	202
SatI	GCNGC	4 cut(s)	69, 177, 381, 384
Sau3AI	GATC	5 cut(s)	118, 142, 450, 520, 550
Sau96I	GGNCC	2 cut(s)	356, 368
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	6 cut(s)	198, 199, 244, 268, 360, 529
SduI	GDGCHC	2 cut(s)	546, 574
SfaNI	GCATC	1 cut(s)	88
SfoI	GGCGCC	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	300
SinI	GGWCC	1 cut(s)	356
SmaI	CCCGGG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SsiI	CCGC	6 cut(s)	69, 134, 208, 347, 383, 477
SspDI	GGCGCC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	6 cut(s)	196, 197, 242, 266, 358, 527
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	2 cut(s)	296, 401
TaqI	TCGA	6 cut(s)	9, 203, 290, 300, 517, 619
TaqII	GACCGA	1 cut(s)	325
TatI	WGTACW	2 cut(s)	407, 423
TauI	GCSGC	2 cut(s)	71, 386
TfiI	GAWTC	2 cut(s)	191, 342
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	176, 380
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	602
TspGWI	ACGGA	1 cut(s)	236
TspMI	CCCGGG	1 cut(s)	197
Tth111I	GACNNNGTC	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	356
XmaI	CCCGGG	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	203, 307
XmnI	GAANNNNTTC	2 cut(s)	452, 505
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.