Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8042996.1

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 514

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8042996.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 418 bp

atgggcgtcgattactacaaggttcttcaagtagaacggaatgccaaagacgatgacttgaagaaagcctatcgcaagctcgccatgaaatggcaccccgataaaaaccctaacaacaagaaagctgccgaagccaaattcaagcaaatctccgaagcctacgatgttttgagtgatcctcaaaagcgagcggtgtacgatcagtacggcgaggagggtttgaaggcaggggcgccgccaccggattcggggttttcggccggcggacaggacggtccgaccacgttccggttcaataccaggaacccggatgatatattttccgagtttttcgggttttcgggtttcggacaggggatgccggacatgggccgggccggcgggtcgaggccgggtggggcgttcccgaggagcatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

8.75

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
AccB1I	GGYRCC	2 cut(s)	93, 232
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	4 cut(s)	191, 236, 264, 381
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	2 cut(s)	6, 233
AfaI	GTAC	2 cut(s)	197, 206
AfiI	CCNNNNNNNGG	4 cut(s)	90, 248, 288, 368
AgsI	TTSAA	5 cut(s)	29, 61, 142, 223, 295
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	2 cut(s)	79, 125
AluI	AGCT	2 cut(s)	79, 125
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	4 cut(s)	258, 370, 375, 389
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	3 cut(s)	275, 370, 375
AsuC2I	CCSGG	3 cut(s)	308, 374, 393
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	275
BanI	GGYRCC	2 cut(s)	93, 232
BbvI	GCAGC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	301
BcnI	CCSGG	3 cut(s)	308, 374, 393
BfoI	RGCGCY	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	2 cut(s)	126, 236
BlsI	GCNGC	2 cut(s)	127, 237
Bme1390I	CCNGG	4 cut(s)	301, 308, 374, 393
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	3 cut(s)	275, 370, 375
BmiI	GGNNCC	3 cut(s)	95, 234, 305
BmrFI	CCNGG	4 cut(s)	301, 308, 374, 393
BmsI	GCATC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpuMI	CCSGG	3 cut(s)	308, 374, 393
BsaHI	GRCGYC	2 cut(s)	6, 233
BsaJI	CCNNGG	1 cut(s)	407
BsaWI	WCCGGW	2 cut(s)	241, 288
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 248, 288, 368
Bse118I	RCCGGY	2 cut(s)	260, 377
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	407
BseGI	GGATG	2 cut(s)	316, 363
BseLI	CCNNNNNNNGG	4 cut(s)	90, 248, 288, 368
BseRI	GAGGAG	1 cut(s)	227
BseX3I	CGGCCG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	260, 372, 377, 391
BshNI	GGYRCC	2 cut(s)	93, 232
BsiEI	CGRYCG	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	8 cut(s)	242, 261, 289, 308, 362, 373, 378, 392
BslI	CCNNNNNNNGG	4 cut(s)	90, 248, 288, 368
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	4 cut(s)	260, 372, 377, 391
BsoBI	CYCGRG	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	175, 199
BspACI	CCGC	4 cut(s)	191, 236, 264, 381
BspANI	GGCC	4 cut(s)	260, 372, 377, 391
BspLI	GGNNCC	3 cut(s)	95, 234, 305
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	2 cut(s)	93, 232
BsrBI	CCGCTC	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	260, 377
BssAI	RCCGGY	2 cut(s)	260, 377
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	2 cut(s)	175, 199
BssNI	GRCGYC	2 cut(s)	6, 233
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	275
BstACI	GRCGYC	2 cut(s)	6, 233
BstC8I	GCNNGC	5 cut(s)	77, 81, 189, 262, 379
BstF5I	GGATG	2 cut(s)	316, 363
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	2 cut(s)	178, 202
BstMBI	GATC	2 cut(s)	175, 199
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 378
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	4 cut(s)	299, 306, 372, 391
BstV1I	GCAGC	1 cut(s)	112
BstZI	CGGCCG	1 cut(s)	258
BsuRI	GGCC	4 cut(s)	260, 372, 377, 391
BtsCI	GGATG	2 cut(s)	316, 363
Cac8I	GCNNGC	5 cut(s)	77, 81, 189, 262, 379
CfoI	GCGC	1 cut(s)	235
Cfr10I	RCCGGY	2 cut(s)	260, 377
Cfr13I	GGNCC	3 cut(s)	275, 370, 375
CpoI	CGGWCCG	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	196, 205
CspI	CGGWCCG	1 cut(s)	275
CviAII	CATG	3 cut(s)	85, 367, 415
CviJI	RGCY	9 cut(s)	68, 79, 125, 134, 158, 260, 372, 377, 391
CviKI_1	RGCY	9 cut(s)	68, 79, 125, 134, 158, 260, 372, 377, 391
CviQI	GTAC	2 cut(s)	196, 205
DinI	GGCGCC	1 cut(s)	234
DpnI	GATC	2 cut(s)	177, 201
DpnII	GATC	2 cut(s)	175, 199
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	258
EagI	CGGCCG	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	279
EclXI	CGGCCG	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	275
Eco52I	CGGCCG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	299
EgeI	GGCGCC	1 cut(s)	234
EheI	GGCGCC	1 cut(s)	234
FaeI	CATG	3 cut(s)	88, 370, 418
FaiI	YATR	4 cut(s)	86, 317, 368, 416
FatI	CATG	3 cut(s)	84, 366, 414
FauI	CCCGC	1 cut(s)	374
Fnu4HI	GCNGC	2 cut(s)	126, 236
FokI	GGATG	2 cut(s)	323, 370
Fsp4HI	GCNGC	2 cut(s)	126, 236
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	2 cut(s)	126, 236
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	260, 372, 377, 391
HapII	CCGG	8 cut(s)	242, 261, 289, 308, 362, 373, 378, 392
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	2 cut(s)	6, 233
Hin1II	CATG	3 cut(s)	88, 370, 418
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	8 cut(s)	242, 261, 289, 308, 362, 373, 378, 392
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	4 cut(s)	154, 279, 325, 350
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 378
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	2 cut(s)	6, 233
Hsp92II	CATG	3 cut(s)	88, 370, 418
HspAI	GCGC	1 cut(s)	233
KasI	GGCGCC	1 cut(s)	232
KroI	GCCGGC	2 cut(s)	260, 377
KroNI	GCCGGC	2 cut(s)	262, 379
Kzo9I	GATC	2 cut(s)	175, 199
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	1 cut(s)	284
MalI	GATC	2 cut(s)	177, 201
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	2 cut(s)	175, 199
MboII	GAAGA	2 cut(s)	17, 73
MluCI	AATT	1 cut(s)	137
Mly113I	GGCGCC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	5 cut(s)	189, 205, 208, 381, 402
MroNI	GCCGGC	2 cut(s)	260, 377
MspI	CCGG	8 cut(s)	242, 261, 289, 308, 362, 373, 378, 392
MspR9I	CCNGG	4 cut(s)	301, 308, 374, 393
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	131, 378
NaeI	GCCGGC	2 cut(s)	262, 379
NarI	GGCGCC	1 cut(s)	233
NciI	CCSGG	3 cut(s)	308, 374, 393
NdeII	GATC	2 cut(s)	175, 199
NgoMIV	GCCGGC	2 cut(s)	260, 377
NlaIII	CATG	3 cut(s)	88, 370, 418
NlaIV	GGNNCC	3 cut(s)	95, 234, 305
NspI	RCATGY	1 cut(s)	418
PctI	GAATGC	1 cut(s)	46
PdiI	GCCGGC	2 cut(s)	262, 379
PfeI	GAWTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	127, 237
PluTI	GGCGCC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	95, 234, 305
PspPI	GGNCC	3 cut(s)	275, 370, 375
RsaI	GTAC	2 cut(s)	197, 206
RsaNI	GTAC	2 cut(s)	196, 205
Rsr2I	CGGWCCG	1 cut(s)	275
RsrII	CGGWCCG	1 cut(s)	275
SatI	GCNGC	2 cut(s)	126, 236
Sau3AI	GATC	2 cut(s)	175, 199
Sau96I	GGNCC	3 cut(s)	275, 370, 375
ScrFI	CCNGG	4 cut(s)	301, 308, 374, 393
SetI	ASST	4 cut(s)	24, 81, 127, 287
SfaNI	GCATC	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	4 cut(s)	191, 236, 264, 381
SspDI	GGCGCC	1 cut(s)	232
StyD4I	CCNGG	4 cut(s)	299, 306, 372, 391
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	2 cut(s)	9, 386
TasI	AATT	1 cut(s)	137
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	52
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.