Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Reverse (-)

160158 .. 162354

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGGGTTGATTTCTATAAGGTTCTTGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAAACCAAGCCCCACCTCCCGGCGCCGGTGGTGGCTATCCTGGAGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGATATCTTCTCCGAGTTCTTTGGTTTCACGAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACCTTCTGGCTTTAGGTATGGCGATGATATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGGAGAAGCCTCCATTCCTTCTAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTTGGAGGATTTGTATAAAGGTGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTCTTCCGGGAGGCCAACACCGGTTGAGGAGATCTTGACGATAGAAATTAAACCCGGTTGGAAAAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAATGAGCATCGTGGAGTCATACCATCCGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGATCTTGTGGTAATGCAAAAGATTTCTCTAGTGGATGCTCTCACAGGTTACACCGCACAGGTCACTACTCTTGACGGAAGAACCTTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTACGAAGAGGTGGTGAAAGGAGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAACTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGGGATCAAGCGGATGTTATCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

335

Amino Acids

36.97

Weight (kDa)

9.08

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	4 - 67	5.1e-28	DnaJ domain
DnaJ_C	PF01556	161 - 221	1.6e-08	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	702
AccII	CGCG	1 cut(s)	375
AciI	CCGC	3 cut(s)	713, 795, 991
AclWI	GGATC	5 cut(s)	170, 274, 889, 899, 992
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	2 cut(s)	174, 406
AcyI	GRCGYC	2 cut(s)	243, 273
AfaI	GTAC	2 cut(s)	358, 863
AfeI	AGCGCT	1 cut(s)	307
AfiI	CCNNNNNNNGG	4 cut(s)	90, 239, 245, 353
AflII	CTTAAG	1 cut(s)	59
AgeI	ACCGGT	1 cut(s)	580
AgsI	TTSAA	4 cut(s)	29, 142, 295, 727
AjnI	CCWGG	2 cut(s)	259, 645
AluBI	AGCT	7 cut(s)	58, 68, 134, 158, 281, 501, 961
AluI	AGCT	7 cut(s)	58, 68, 134, 158, 281, 501, 961
Alw26I	GTCTC	3 cut(s)	478, 529, 726
AlwI	GGATC	5 cut(s)	170, 274, 889, 899, 992
Aor51HI	AGCGCT	1 cut(s)	307
AoxI	GGCC	2 cut(s)	344, 572
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	137
AsiGI	ACCGGT	1 cut(s)	580
AspLEI	GCGC	3 cut(s)	245, 308, 377
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	3 cut(s)	240, 568, 615
AsuHPI	GGTGA	2 cut(s)	886, 993
AsuII	TTCGAA	1 cut(s)	956
AvaII	GGWCC	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	242
BauI	CACGAG	2 cut(s)	340, 546
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	688
BciT130I	CCWGG	2 cut(s)	261, 647
BclI	TGATCA	1 cut(s)	849
BcnI	CCSGG	3 cut(s)	240, 568, 615
BcoDI	GTCTC	3 cut(s)	478, 529, 726
BfaI	CTAG	2 cut(s)	462, 770
BfoI	RGCGCY	2 cut(s)	246, 309
BfrI	CTTAAG	1 cut(s)	59
BglII	AGATCT	3 cut(s)	147, 540, 591
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	5 cut(s)	240, 261, 568, 615, 647
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	5 cut(s)	240, 261, 568, 615, 647
BmsI	GCATC	4 cut(s)	103, 673, 724, 766
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	956
BpuEI	CTTGAG	1 cut(s)	946
BpuMI	CCSGG	3 cut(s)	240, 568, 615
BsaBI	GATNNNNATC	1 cut(s)	539
BsaHI	GRCGYC	2 cut(s)	243, 273
BsaWI	WCCGGW	4 cut(s)	288, 437, 580, 835
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 239, 245, 353
Bse118I	RCCGGY	2 cut(s)	245, 580
Bse8I	GATNNNNATC	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	261, 647
BseGI	GGATG	5 cut(s)	94, 680, 715, 781, 999
BseJI	GATNNNNATC	1 cut(s)	539
BseLI	CCNNNNNNNGG	4 cut(s)	90, 239, 245, 353
BseMII	CTCAG	2 cut(s)	194, 960
BseRI	GAGGAG	2 cut(s)	456, 602
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	2 cut(s)	346, 574
BshNI	GGYRCC	1 cut(s)	242
BshTI	ACCGGT	1 cut(s)	580
BsiSI	CCGG	9 cut(s)	240, 246, 276, 289, 438, 567, 581, 615, 836
BsiWI	CGTACG	1 cut(s)	861
BslI	CCNNNNNNNGG	4 cut(s)	90, 239, 245, 353
BsmAI	GTCTC	3 cut(s)	478, 529, 726
BsmBI	CGTCTC	1 cut(s)	726
BsnI	GGCC	2 cut(s)	346, 574
Bsp119I	TTCGAA	1 cut(s)	956
BspACI	CCGC	3 cut(s)	713, 795, 991
BspANI	GGCC	2 cut(s)	346, 574
BspCNI	CTCAG	2 cut(s)	193, 961
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	5 cut(s)	170, 274, 889, 899, 992
BspT104I	TTCGAA	1 cut(s)	956
BspT107I	GGYRCC	1 cut(s)	242
BspTI	CTTAAG	1 cut(s)	59
BsrFI	RCCGGY	2 cut(s)	245, 580
BssAI	RCCGGY	2 cut(s)	245, 580
BssNI	GRCGYC	2 cut(s)	243, 273
BssSI	CACGAG	2 cut(s)	340, 546
Bst2BI	CACGAG	2 cut(s)	340, 546
Bst2UI	CCWGG	2 cut(s)	261, 647
Bst4CI	ACNGT	1 cut(s)	832
Bst6I	CTCTTC	2 cut(s)	568, 861
BstACI	GRCGYC	2 cut(s)	243, 273
BstAFI	CTTAAG	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	956
BstC8I	GCNNGC	1 cut(s)	890
BstDEI	CTNAG	2 cut(s)	180, 969
BstF5I	GGATG	5 cut(s)	94, 680, 715, 781, 999
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	2 cut(s)	246, 309
BstHHI	GCGC	3 cut(s)	245, 308, 377
BstMAI	GTCTC	3 cut(s)	478, 529, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	2 cut(s)	261, 647
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	5 cut(s)	238, 259, 566, 613, 645
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	4 cut(s)	147, 540, 591, 904
BstYI	RGATCY	4 cut(s)	147, 540, 591, 904
BsuRI	GGCC	2 cut(s)	346, 574
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	5 cut(s)	94, 680, 715, 781, 999
BtsIMutI	CAGTG	1 cut(s)	966
Cac8I	GCNNGC	1 cut(s)	890
CfoI	GCGC	3 cut(s)	245, 308, 377
Cfr10I	RCCGGY	2 cut(s)	245, 580
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	357, 862
CspAI	ACCGGT	1 cut(s)	580
CviAII	CATG	2 cut(s)	85, 889
CviQI	GTAC	2 cut(s)	357, 862
DdeI	CTNAG	2 cut(s)	180, 969
DinI	GGCGCC	1 cut(s)	244
DraI	TTTAAA	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	568, 861
EarI	CTCTTC	2 cut(s)	568, 861
Eco147I	AGGCCT	1 cut(s)	346
Eco32I	GATATC	2 cut(s)	316, 409
Eco47I	GGWCC	1 cut(s)	380
Eco47III	AGCGCT	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	174, 406
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	259, 645
EcoRV	GATATC	2 cut(s)	316, 409
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	726
FaeI	CATG	2 cut(s)	88, 892
FaiI	YATR	6 cut(s)	18, 86, 399, 516, 677, 890
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	2 cut(s)	84, 888
FbaI	TGATCA	1 cut(s)	849
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	4 cut(s)	81, 667, 702, 788
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	462, 770
GlaI	GCGC	3 cut(s)	244, 307, 376
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	2 cut(s)	246, 309
HaeIII	GGCC	2 cut(s)	346, 574
HapII	CCGG	9 cut(s)	240, 246, 276, 289, 438, 567, 581, 615, 836
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	3 cut(s)	245, 308, 377
Hin1I	GRCGYC	2 cut(s)	243, 273
Hin1II	CATG	2 cut(s)	88, 892
Hin6I	GCGC	3 cut(s)	243, 306, 375
HinP1I	GCGC	3 cut(s)	243, 306, 375
HindIII	AAGCTT	2 cut(s)	66, 156
HinfI	GANTC	5 cut(s)	368, 560, 672, 930, 936
HpaII	CCGG	9 cut(s)	240, 246, 276, 289, 438, 567, 581, 615, 836
HphI	GGTGA	2 cut(s)	886, 993
Hpy166II	GTNNAC	2 cut(s)	703, 841
Hpy188I	TCNGA	6 cut(s)	154, 183, 271, 325, 685, 935
Hpy188III	TCNNGA	8 cut(s)	26, 98, 340, 548, 557, 595, 812, 912
Hpy8I	GTNNAC	2 cut(s)	703, 841
Hpy99I	CGWCG	2 cut(s)	56, 862
HpyAV	CCTTC	8 cut(s)	209, 357, 393, 430, 468, 652, 878, 963
HpyCH4III	ACNGT	1 cut(s)	832
HpyCH4V	TGCA	1 cut(s)	757
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	2 cut(s)	180, 969
Hsp92I	GRCGYC	2 cut(s)	243, 273
Hsp92II	CATG	2 cut(s)	88, 892
HspAI	GCGC	3 cut(s)	243, 306, 375
KasI	GGCGCC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	849
LmnI	GCTCC	2 cut(s)	278, 478
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	4 cut(s)	103, 673, 724, 766
MaeI	CTAG	2 cut(s)	462, 770
MaeIII	GTNAC	2 cut(s)	788, 802
MboII	GAAGA	8 cut(s)	224, 310, 403, 544, 550, 555, 831, 878
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	4 cut(s)	147, 540, 591, 904
MluCI	AATT	3 cut(s)	137, 488, 606
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	3 cut(s)	362, 554, 681
MmeI	TCCRAC	1 cut(s)	599
MseI	TTAA	4 cut(s)	60, 221, 609, 827
MspCI	CTTAAG	1 cut(s)	59
MspI	CCGG	9 cut(s)	240, 246, 276, 289, 438, 567, 581, 615, 836
MspR9I	CCNGG	5 cut(s)	240, 261, 568, 615, 647
MssI	GTTTAAAC	1 cut(s)	222
MunI	CAATTG	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	261, 647
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	372
NarI	GGCGCC	1 cut(s)	243
NciI	CCSGG	3 cut(s)	240, 568, 615
NlaIII	CATG	2 cut(s)	88, 892
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	802
NspI	RCATGY	1 cut(s)	892
NspV	TTCGAA	1 cut(s)	956
PaeI	GCATGC	1 cut(s)	892
PceI	AGGCCT	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	930, 936
Pfl23II	CGTACG	1 cut(s)	861
PflMI	CCANNNNNTGG	1 cut(s)	90
PfoI	TCCNGGA	3 cut(s)	259, 566, 645
PinAI	ACCGGT	1 cut(s)	580
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	3 cut(s)	362, 554, 680
PluTI	GGCGCC	1 cut(s)	246
PmeI	GTTTAAAC	1 cut(s)	222
PpsI	GAGTC	3 cut(s)	362, 554, 680
PpuMI	RGGWCCY	1 cut(s)	380
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	259, 645
PspGI	CCWGG	2 cut(s)	259, 645
PspLI	CGTACG	1 cut(s)	861
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	380
PspPPI	RGGWCCY	1 cut(s)	380
PsuI	RGATCY	4 cut(s)	147, 540, 591, 904
RsaI	GTAC	2 cut(s)	358, 863
RsaNI	GTAC	2 cut(s)	357, 862
SaqAI	TTAA	4 cut(s)	60, 221, 609, 827
SatI	GCNGC	1 cut(s)	429
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	3 cut(s)	362, 554, 681
ScrFI	CCNGG	5 cut(s)	240, 261, 568, 615, 647
SfaNI	GCATC	4 cut(s)	103, 673, 724, 766
SfoI	GGCGCC	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	956
SgrAI	CRCCGGYG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	59, 925
SmoI	CTYRAG	2 cut(s)	59, 925
SphI	GCATGC	1 cut(s)	892
Sse9I	AATT	3 cut(s)	137, 488, 606
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	3 cut(s)	713, 795, 991
SspDI	GGCGCC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	462, 770
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	5 cut(s)	238, 259, 566, 613, 645
TaaI	ACNGT	1 cut(s)	832
TaqI	TCGA	2 cut(s)	37, 956
TasI	AATT	3 cut(s)	137, 488, 606
TfiI	GAWTC	2 cut(s)	930, 936
Tru1I	TTAA	4 cut(s)	60, 221, 609, 827
Tru9I	TTAA	4 cut(s)	60, 221, 609, 827
TscAI	CASTG	1 cut(s)	973
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	4 cut(s)	101, 551, 685, 928
TspGWI	ACGGA	4 cut(s)	222, 831, 846, 897
TspRI	CASTG	1 cut(s)	973
Van91I	CCANNNNNTGG	1 cut(s)	90
Vha464I	CTTAAG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	137
XceI	RCATGY	1 cut(s)	892
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	2 cut(s)	462, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.