Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

4554125 .. 4555125

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0061000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGACTGCTAAATTACCTCACCAAGGTTGCGAAGATATTGATAGATTAAATAGAAACTTTCTTTGGGGTGATTCTACTGATAAGAAGAAAATTCACTTATTGAATTGGGATACAGTCTGCAAACCCATATGCAAAGTTGGTCTTGGTATTAAAAAATCTGCTGAGATGAATAAGGCTATGCTAGCTAAAACTAGTTGGAGAATGATCAATGGTGATAGTGGTTTATGGTGCAAGATGTTTAAGCAAAAGTACCTTCGAAAGGCTTCCTTTCTTGATAAGAATTATACACACCATCCTAATTGTTCTAGCACTTGGAGTAGTGTGCTCCATGGTGCTAAACTTCTTAGAGATGGTTTACTTTGGAAAGTAGGGAATGGGAATACTATTAAGTTTTGGATCGATGATTGGACTGGACATGGAGCCCTCTCTTCCTTTGCCTCTGATGCTAATCTTGTTGACTACAATGCTCTTGTCCATGATTTTTGGCTCAGTAATGGATGTAATTTTGATCTCCTAAAGGTATGCCTCCCTGATCACATTATTGATATTATCGGTAAAGTTCCTATTTGTGTTAATGGTTCTATTGCTGATAATCTTATTTGGAAGCATACTTCTAATGGTGTATTTACTGTTAAAAGTGCGTACATGTGCTCTATTGGTTCTGATCTTACTCCTGATTGTTTTTGGAAGAAAATATGGAATTTTAATATCCCTCCCAAACTCAAAACCTTTGCTTGGATTCTTGTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

251

Amino Acids

28.51

Weight (kDa)

9.11

Isoelectric Point (pI)

13.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	93, 703
AfaI	GTAC	2 cut(s)	254, 647
AfiI	CCNNNNNNNGG	3 cut(s)	26, 262, 738
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	2 cut(s)	106, 752
AhlI	ACTAGT	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw21I	GWGCWC	2 cut(s)	330, 656
AlwI	GGATC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	93, 703
Asp700I	GAANNNNTTC	1 cut(s)	265
AsuHPI	GGTGA	3 cut(s)	14, 83, 227
AsuII	TTCGAA	1 cut(s)	259
AsuNHI	GCTAGC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	427
Bbv12I	GWGCWC	2 cut(s)	330, 656
BccI	CCATC	2 cut(s)	303, 347
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	2 cut(s)	207, 535
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	3 cut(s)	185, 195, 309
BfuI	GTATCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	1 cut(s)	436
BmtI	GCTAGC	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	259
Bsa29I	ATCGAT	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	25, 331
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 262, 738
Bse1I	ACTGG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	25, 331
BseGI	GGATG	2 cut(s)	295, 506
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	26, 262, 738
BseMII	CTCAG	2 cut(s)	156, 505
BseNI	ACTGG	1 cut(s)	418
BshVI	ATCGAT	1 cut(s)	402
BsiHKAI	GWGCWC	2 cut(s)	330, 656
BslI	CCNNNNNNNGG	3 cut(s)	26, 262, 738
Bsp119I	TTCGAA	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	330, 427, 656
Bsp143I	GATC	5 cut(s)	207, 399, 511, 535, 667
Bsp19I	CCATGG	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	157, 504
BspDI	ATCGAT	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	424
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	407
BspT104I	TTCGAA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	25, 331
BssMI	GATC	5 cut(s)	207, 399, 511, 535, 667
BssT1I	CCWWGG	2 cut(s)	25, 331
Bst4CI	ACNGT	2 cut(s)	118, 634
Bst6I	CTCTTC	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	165, 347, 491
BstDSI	CCRYGG	1 cut(s)	331
BstENI	CCTNNNNNAGG	2 cut(s)	24, 260
BstF5I	GGATG	2 cut(s)	295, 506
BstKTI	GATC	5 cut(s)	210, 402, 514, 538, 670
BstMBI	GATC	5 cut(s)	207, 399, 511, 535, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 446
BstNSI	RCATGY	1 cut(s)	652
Bsu15I	ATCGAT	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	295, 506
Cac8I	GCNNGC	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	253, 646
CviAII	CATG	4 cut(s)	332, 419, 479, 649
CviJI	RGCY	5 cut(s)	179, 188, 266, 425, 490
CviKI_1	RGCY	5 cut(s)	179, 188, 266, 425, 490
CviQI	GTAC	2 cut(s)	253, 646
DdeI	CTNAG	3 cut(s)	165, 347, 491
DpnI	GATC	5 cut(s)	209, 401, 513, 537, 669
DpnII	GATC	5 cut(s)	207, 399, 511, 535, 667
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	25, 331
Eco24I	GRGCYC	1 cut(s)	427
EcoNI	CCTNNNNNAGG	2 cut(s)	24, 260
EcoT14I	CCWWGG	2 cut(s)	25, 331
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	25, 331
FaeI	CATG	4 cut(s)	335, 422, 482, 652
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 254, 286
FatI	CATG	4 cut(s)	331, 418, 478, 648
FauNDI	CATATG	1 cut(s)	131
FbaI	TGATCA	2 cut(s)	207, 535
FokI	GGATG	2 cut(s)	282, 513
FriOI	GRGCYC	1 cut(s)	427
FspBI	CTAG	3 cut(s)	185, 195, 309
Hin1II	CATG	4 cut(s)	335, 422, 482, 652
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	74, 742
HphI	GGTGA	3 cut(s)	14, 83, 227
Hpy166II	GTNNAC	2 cut(s)	359, 460
Hpy188I	TCNGA	2 cut(s)	445, 667
Hpy188III	TCNNGA	2 cut(s)	275, 677
Hpy8I	GTNNAC	2 cut(s)	359, 460
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	118, 634
HpyCH4V	TGCA	4 cut(s)	4, 123, 135, 234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 446
HpyF3I	CTNAG	3 cut(s)	165, 347, 491
Hsp92II	CATG	4 cut(s)	335, 422, 482, 652
Ksp22I	TGATCA	2 cut(s)	207, 535
Kzo9I	GATC	5 cut(s)	207, 399, 511, 535, 667
LmnI	GCTCC	2 cut(s)	333, 422
LpnPI	CCDG	3 cut(s)	399, 546, 690
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	185, 195, 309
MalI	GATC	5 cut(s)	209, 401, 513, 537, 669
MboI	GATC	5 cut(s)	207, 399, 511, 535, 667
MboII	GAAGA	4 cut(s)	47, 100, 423, 703
MhlI	GDGCHC	3 cut(s)	330, 427, 656
MluCI	AATT	7 cut(s)	14, 93, 106, 283, 301, 505, 703
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	30, 437, 451, 539, 726
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	7 cut(s)	50, 153, 243, 390, 576, 636, 708
MwoI	GCNNNNNNNGC	2 cut(s)	185, 446
NcoI	CCATGG	1 cut(s)	331
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	5 cut(s)	207, 399, 511, 535, 667
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	4 cut(s)	335, 422, 482, 652
NlaIV	GGNNCC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	652
NspV	TTCGAA	1 cut(s)	259
PciI	ACATGT	1 cut(s)	648
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	74, 742
PscI	ACATGT	1 cut(s)	648
PspN4I	GGNNCC	1 cut(s)	424
RsaI	GTAC	2 cut(s)	254, 647
RsaNI	GTAC	2 cut(s)	253, 646
SaqAI	TTAA	7 cut(s)	50, 153, 243, 390, 576, 636, 708
Sau3AI	GATC	5 cut(s)	207, 399, 511, 535, 667
SduI	GDGCHC	3 cut(s)	330, 427, 656
SetI	ASST	6 cut(s)	22, 31, 190, 258, 525, 734
SfaNI	GCATC	1 cut(s)	436
SfuI	TTCGAA	1 cut(s)	259
SpeI	ACTAGT	1 cut(s)	194
Sse9I	AATT	7 cut(s)	14, 93, 106, 283, 301, 505, 703
SspMI	CTAG	3 cut(s)	185, 195, 309
StyI	CCWWGG	2 cut(s)	25, 331
TaaI	ACNGT	2 cut(s)	118, 634
TaqI	TCGA	2 cut(s)	259, 402
TasI	AATT	7 cut(s)	14, 93, 106, 283, 301, 505, 703
TfiI	GAWTC	2 cut(s)	74, 742
Tru1I	TTAA	7 cut(s)	50, 153, 243, 390, 576, 636, 708
Tru9I	TTAA	7 cut(s)	50, 153, 243, 390, 576, 636, 708
TspDTI	ATGAA	1 cut(s)	185
XagI	CCTNNNNNAGG	2 cut(s)	24, 260
XapI	RAATTY	2 cut(s)	93, 703
XceI	RCATGY	1 cut(s)	652
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	3 cut(s)	185, 195, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.