Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

24759178 .. 24760330

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1167100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGACTCGTCGCTCACGTCACACCACCACTCCCTTTTCGGAACTCCGGCCAGAACAGGAAGCCCCAGGTTTTGCATCAAAACGCAGCGGTTTAAGAAGAAATCCTCTCAGGCTTTTGTACCAGAGAGAACTGAACACACAGAGGGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAAGCATGGGGGTGGATTACTACAAGGTTCTGCAGGTAGAACGAAGCGCCAAAGACGATGACTTGAAGAAAGCTTATCGGAAGCTCGCCATGAAGTGGCACCCAGATAAAAACCCTAACAACAAGAAGGCCGCTGAGGCGAAATTCAAGCAAATCTCGGAAGCCTACGATGTTTTGAGTGATCCCCAAAAGAGAGCAGTATACGATCAGTACGGGGAGGAGGGGTTGAAAGGAGGGGTACCGCCGCCCGATTCGTCATGGTCTGGCGGGCAAGGGCACGAGGGCGGTCCGACGACGTTCCGGTTCAACACTCGGAGCCCTGACGATATTTTCTCTGAAATTTTCGGGTTTTCGGGTTTTGGAGGGATGCCGGACATGGGCGGGTCAAGGGCAGGCGGGTCGAGGGCTGGCGGGAACCCGTTTCCGAGGAGTATGTTTGGGGAAGACATATTTGCTCAGTTAAGAGGCGGAGCAGAGCCTTCTGCAGCTGCGCTGAGGAAAGCTGCACCGATAGAGAGGACATTGCCTTGTACTTTGGAGGATTTGTTTAAGGGCACCACCAAAAAGATGAAGATTTCTAGGGATGTTCCTGATGCTAGTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

265

Amino Acids

29.68

Weight (kDa)

9.49

Isoelectric Point (pI)

62.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	69 - 132	2.2e-27	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	3 cut(s)	288, 427, 743
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	2 cut(s)	332, 528
AfaI	GTAC	4 cut(s)	119, 401, 429, 721
AfiI	CCNNNNNNNGG	2 cut(s)	285, 566
AgsI	TTSAA	4 cut(s)	256, 337, 418, 496
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	4 cut(s)	263, 274, 677, 692
AluI	AGCT	4 cut(s)	263, 274, 677, 692
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	2 cut(s)	47, 318
ApeKI	GCWGC	4 cut(s)	84, 674, 677, 692
ApoI	RAATTY	2 cut(s)	332, 528
Asp718I	GGTACC	1 cut(s)	427
AspLEI	GCGC	2 cut(s)	239, 682
AspS9I	GGNCC	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	476
BaeGI	GKGCMC	2 cut(s)	468, 746
BanI	GGYRCC	3 cut(s)	288, 427, 743
BanII	GRGCYC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	639
BbvCI	CCTCAGC	2 cut(s)	324, 683
BbvI	GCAGC	4 cut(s)	96, 664, 679, 686
BcgI	CGANNNNNNTGC	2 cut(s)	570, 604
BciT130I	CCWGG	1 cut(s)	66
BfaI	CTAG	2 cut(s)	768, 786
BfmI	CTRYAG	2 cut(s)	221, 672
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	6 cut(s)	85, 321, 434, 675, 678, 693
BlsI	GCNGC	6 cut(s)	86, 322, 435, 676, 679, 694
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	476
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	5 cut(s)	290, 429, 506, 605, 745
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	3 cut(s)	83, 546, 772
BpiI	GAAGAC	1 cut(s)	639
Bpu10I	CCTNAGC	2 cut(s)	324, 683
BsaJI	CCNNGG	2 cut(s)	64, 614
BsaWI	WCCGGW	1 cut(s)	489
BsaXI	ACNNNNNCTCC	6 cut(s)	13, 43, 398, 428, 719, 749
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 566
Bse3DI	GCAATG	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	64, 614
BseGI	GGATG	2 cut(s)	561, 778
BseLI	CCNNNNNNNGG	2 cut(s)	285, 566
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	4 cut(s)	121, 315, 659, 674
BseRI	GAGGAG	4 cut(s)	161, 200, 422, 631
BseSI	GKGCMC	2 cut(s)	468, 746
BseXI	GCAGC	4 cut(s)	96, 664, 679, 686
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	49, 320
BshNI	GGYRCC	3 cut(s)	288, 427, 743
BsiSI	CCGG	3 cut(s)	46, 490, 560
BslI	CCNNNNNNNGG	2 cut(s)	285, 566
BsnI	GGCC	2 cut(s)	49, 320
Bsp1286I	GDGCHC	3 cut(s)	468, 509, 746
Bsp143I	GATC	2 cut(s)	370, 394
BspANI	GGCC	2 cut(s)	49, 320
BspCNI	CTCAG	4 cut(s)	120, 316, 658, 675
BspLI	GGNNCC	5 cut(s)	290, 429, 506, 605, 745
BspMAI	CTGCAG	2 cut(s)	225, 676
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	3 cut(s)	288, 427, 743
BsrDI	GCAATG	1 cut(s)	710
BssECI	CCNNGG	2 cut(s)	64, 614
BssMI	GATC	2 cut(s)	370, 394
BssNAI	GTATAC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	467
Bst1107I	GTATAC	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	66
BstC8I	GCNNGC	4 cut(s)	276, 458, 583, 598
BstDEI	CTNAG	4 cut(s)	107, 324, 645, 683
BstF5I	GGATG	2 cut(s)	561, 778
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	239, 682
BstKTI	GATC	2 cut(s)	373, 397
BstMBI	GATC	2 cut(s)	370, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	2 cut(s)	221, 672
BstSLI	GKGCMC	2 cut(s)	468, 746
BstV1I	GCAGC	4 cut(s)	96, 664, 679, 686
BstV2I	GAAGAC	1 cut(s)	639
BstZ17I	GTATAC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	49, 320
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	561, 778
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	4 cut(s)	276, 458, 583, 598
CfoI	GCGC	2 cut(s)	239, 682
Cfr13I	GGNCC	1 cut(s)	476
CpoI	CGGWCCG	1 cut(s)	476
Csp6I	GTAC	4 cut(s)	118, 400, 428, 720
CspI	CGGWCCG	1 cut(s)	476
CviAII	CATG	4 cut(s)	196, 280, 447, 565
CviQI	GTAC	4 cut(s)	118, 400, 428, 720
DdeI	CTNAG	4 cut(s)	107, 324, 645, 683
DpnI	GATC	2 cut(s)	372, 396
DpnII	GATC	2 cut(s)	370, 394
EaeI	YGGCCR	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	509
FaeI	CATG	4 cut(s)	199, 283, 450, 568
FaiI	YATR	7 cut(s)	197, 281, 391, 448, 566, 623, 638
FatI	CATG	4 cut(s)	195, 279, 446, 564
FauI	CCCGC	4 cut(s)	449, 563, 578, 593
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	6 cut(s)	85, 321, 434, 675, 678, 693
FokI	GGATG	2 cut(s)	568, 785
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	6 cut(s)	85, 321, 434, 675, 678, 693
FspBI	CTAG	2 cut(s)	768, 786
GlaI	GCGC	2 cut(s)	238, 681
GluI	GCNGC	6 cut(s)	85, 321, 434, 675, 678, 693
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	49, 320
HapII	CCGG	3 cut(s)	46, 490, 560
HhaI	GCGC	2 cut(s)	239, 682
Hin1II	CATG	4 cut(s)	199, 283, 450, 568
Hin6I	GCGC	2 cut(s)	237, 680
HinP1I	GCGC	2 cut(s)	237, 680
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	2 cut(s)	4, 440
HpaII	CCGG	3 cut(s)	46, 490, 560
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	7 cut(s)	40, 270, 349, 480, 504, 526, 615
Hpy188III	TCNNGA	1 cut(s)	779
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	3 cut(s)	12, 484, 487
HpyAV	CCTTC	2 cut(s)	310, 678
HpyCH4IV	ACGT	2 cut(s)	16, 485
HpyCH4V	TGCA	4 cut(s)	74, 223, 674, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	4 cut(s)	107, 324, 645, 683
HpySE526I	ACGT	2 cut(s)	16, 485
Hsp92II	CATG	4 cut(s)	199, 283, 450, 568
HspAI	GCGC	2 cut(s)	237, 680
KpnI	GGTACC	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	370, 394
LmnI	GCTCC	2 cut(s)	504, 659
Lsp1109I	GCAGC	4 cut(s)	96, 664, 679, 686
LweI	GCATC	3 cut(s)	83, 546, 772
MaeI	CTAG	2 cut(s)	768, 786
MaeII	ACGT	2 cut(s)	16, 485
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	2 cut(s)	372, 396
MboI	GATC	2 cut(s)	370, 394
MboII	GAAGA	4 cut(s)	108, 268, 644, 772
MhlI	GDGCHC	3 cut(s)	468, 509, 746
MluCI	AATT	2 cut(s)	332, 528
MmeI	TCCRAC	1 cut(s)	503
MseI	TTAA	3 cut(s)	92, 650, 738
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	3 cut(s)	87, 323, 677
MspI	CCGG	3 cut(s)	46, 490, 560
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	2 cut(s)	370, 394
NlaIII	CATG	4 cut(s)	199, 283, 450, 568
NlaIV	GGNNCC	5 cut(s)	290, 429, 506, 605, 745
NmuCI	GTSAC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	6 cut(s)	86, 322, 435, 676, 679, 694
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	5 cut(s)	290, 429, 506, 605, 745
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	2 cut(s)	225, 676
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	4 cut(s)	119, 401, 429, 721
RsaNI	GTAC	4 cut(s)	118, 400, 428, 720
RseI	CAYNNNNRTG	1 cut(s)	200
Rsr2I	CGGWCCG	1 cut(s)	476
RsrII	CGGWCCG	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	92, 650, 738
SatI	GCNGC	6 cut(s)	85, 321, 434, 675, 678, 693
Sau3AI	GATC	2 cut(s)	370, 394
Sau96I	GGNCC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	3 cut(s)	468, 509, 746
SetI	ASST	9 cut(s)	19, 70, 219, 228, 265, 276, 488, 679, 694
SfaNI	GCATC	3 cut(s)	83, 546, 772
SfcI	CTRYAG	2 cut(s)	221, 672
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	332, 528
SspMI	CTAG	2 cut(s)	768, 786
StyD4I	CCNGG	1 cut(s)	64
TaiI	ACGT	2 cut(s)	19, 488
TaqI	TCGA	1 cut(s)	590
TasI	AATT	2 cut(s)	332, 528
TatI	WGTACW	1 cut(s)	719
TauI	GCSGC	2 cut(s)	323, 436
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	3 cut(s)	92, 650, 738
Tru9I	TTAA	3 cut(s)	92, 650, 738
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	4 cut(s)	84, 674, 677, 692
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	296, 773
Van91I	CCANNNNNTGG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	332, 528
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	2 cut(s)	768, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.