Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

16779697 .. 16782586

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGGTCGACTACTACAAGGTTCTGCAGGTAGAACGAAGCGCCAAAGACGATGACTTGAAGAAAGCGTATCGGAAGCTCGCCATGAAGTGGCACCCCGATAAAAACCCTAACAACAAGAAAGCCGCCGAGGCCAAATTCAAGCAAATCTCCGAAGCCTACGATGTTTTGAGTGATCCCCAAAAGCGAGCAGTGTACGATCAGTACGGGGAGGAGGGGTTGAAGGGAGGGGTACCGCCGCCCGATTCGTCCTGGTCCGGCGGACAAGGGCATGAGGGTGGTCCGACGACGTTCCGGTTCAACACCCGGAGCCCTGACGATATTTTCTCCGAGTTTTTTGGGGTTTCGGGTTTTGGGGGGATGCCGGACATGGGTGGGTCAAGGGCAGGCGGGTCGAGGGCTGGCGGGAACCCGTTTCCGAGGAGTATGTTTGGGGAAGACATATTTGCGCAGTTTAGAGGCGGAGCAGAGCCTTCTGCAGCTGCCCCGCGGAAAGCTGCACCAATACAGAGGACATTGCCTTGTACTTTGGAGGATTTGTATAAGGGCACCACCAAAAAGATGAAGATTTCTAGGGATGTTCCTGATGCTAGTGGGAGAACTACCACAGTGGAGGAAATTCTAACAATTGAGATCAAGCCAGGGTGGAAAAAGGGCACGAAAATCACTTTCCCGGAGAAAGGGAATGAACAGAGAGGAATCATACCAGCAGACCTTGTATTTATCATTGATGAGAAGCCTCACACCCTTTTCAAGAGGGACGGGAATGATCTTACAATCACTCAGAACGATCTCTCTTGCGGAAGCTCTGACAGGTTACACGGCACAGCTGACAACCCTCGACGGCAGAAATCTTACAGTCTCCATCACCAATATCATCAGTCCCACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

298

Amino Acids

32.84

Weight (kDa)

8.98

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	19
Acc65I	GGTACC	1 cut(s)	232
AccB1I	GGYRCC	3 cut(s)	93, 232, 548
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	490
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	137, 618
AfaI	GTAC	4 cut(s)	197, 206, 234, 526
AfiI	CCNNNNNNNGG	3 cut(s)	90, 371, 680
AgsI	TTSAA	5 cut(s)	61, 142, 223, 301, 754
AjnI	CCWGG	2 cut(s)	251, 640
AluBI	AGCT	5 cut(s)	79, 482, 497, 807, 830
AluI	AGCT	5 cut(s)	79, 482, 497, 807, 830
Alw26I	GTCTC	1 cut(s)	866
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	3 cut(s)	479, 482, 497
ApoI	RAATTY	2 cut(s)	137, 618
Asp718I	GGTACC	1 cut(s)	232
AspLEI	GCGC	2 cut(s)	44, 451
AspS9I	GGNCC	2 cut(s)	255, 281
AsuC2I	CCSGG	2 cut(s)	307, 674
AsuHPI	GGTGA	1 cut(s)	860
AvaII	GGWCC	2 cut(s)	255, 281
BaeGI	GKGCMC	2 cut(s)	551, 659
BanI	GGYRCC	3 cut(s)	93, 232, 548
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	469, 484, 491
BccI	CCATC	1 cut(s)	873
BceAI	ACGGC	2 cut(s)	838, 860
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	2 cut(s)	253, 642
BcnI	CCSGG	2 cut(s)	307, 674
BcoDI	GTCTC	1 cut(s)	866
BfaI	CTAG	2 cut(s)	573, 591
BfmI	CTRYAG	2 cut(s)	26, 477
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	19
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	5 cut(s)	126, 239, 480, 483, 498
BlsI	GCNGC	5 cut(s)	127, 240, 481, 484, 499
Bme1390I	CCNGG	4 cut(s)	253, 307, 642, 674
Bme18I	GGWCC	2 cut(s)	255, 281
BmgT120I	GGNCC	2 cut(s)	255, 281
BmiI	GGNNCC	5 cut(s)	95, 234, 311, 410, 550
BmrFI	CCNGG	4 cut(s)	253, 307, 642, 674
BmsI	GCATC	2 cut(s)	351, 577
BpiI	GAAGAC	1 cut(s)	444
BpuMI	CCSGG	2 cut(s)	307, 674
BsaJI	CCNNGG	4 cut(s)	129, 419, 488, 641
BsaWI	WCCGGW	1 cut(s)	294
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 524, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 371, 680
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	253, 642
BseDI	CCNNGG	4 cut(s)	129, 419, 488, 641
BseGI	GGATG	2 cut(s)	366, 583
BseLI	CCNNNNNNNGG	3 cut(s)	90, 371, 680
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	797
BseRI	GAGGAG	2 cut(s)	227, 436
BseSI	GKGCMC	2 cut(s)	551, 659
BseXI	GCAGC	3 cut(s)	469, 484, 491
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	490
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	3 cut(s)	93, 232, 548
BsiSI	CCGG	5 cut(s)	258, 295, 307, 365, 674
BslFI	GGGAC	2 cut(s)	773, 868
BslI	CCNNNNNNNGG	3 cut(s)	90, 371, 680
BsmAI	GTCTC	1 cut(s)	866
BsmFI	GGGAC	2 cut(s)	773, 868
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	3 cut(s)	314, 551, 659
Bsp143I	GATC	5 cut(s)	175, 199, 633, 769, 790
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	490
BspLI	GGNNCC	5 cut(s)	95, 234, 311, 410, 550
BspMAI	CTGCAG	2 cut(s)	30, 481
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	170
BspT107I	GGYRCC	3 cut(s)	93, 232, 548
BsrDI	GCAATG	1 cut(s)	515
BssECI	CCNNGG	4 cut(s)	129, 419, 488, 641
BssMI	GATC	5 cut(s)	175, 199, 633, 769, 790
Bst2UI	CCWGG	2 cut(s)	253, 642
Bst4CI	ACNGT	2 cut(s)	610, 860
BstC8I	GCNNGC	4 cut(s)	81, 189, 388, 403
BstDEI	CTNAG	1 cut(s)	783
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	366, 583
BstFNI	CGCG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 451
BstKTI	GATC	5 cut(s)	178, 202, 636, 772, 793
BstMAI	GTCTC	1 cut(s)	866
BstMBI	GATC	5 cut(s)	175, 199, 633, 769, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	2 cut(s)	253, 642
BstSCI	CCNGG	4 cut(s)	251, 305, 640, 672
BstSFI	CTRYAG	2 cut(s)	26, 477
BstSLI	GKGCMC	2 cut(s)	551, 659
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	469, 484, 491
BstV2I	GAAGAC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	2 cut(s)	366, 583
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 615
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	81, 189, 388, 403
CfoI	GCGC	2 cut(s)	44, 451
Cfr13I	GGNCC	2 cut(s)	255, 281
Cfr42I	CCGCGG	1 cut(s)	491
Csp6I	GTAC	4 cut(s)	196, 205, 233, 525
CviAII	CATG	3 cut(s)	85, 272, 370
CviQI	GTAC	4 cut(s)	196, 205, 233, 525
DdeI	CTNAG	1 cut(s)	783
DpnI	GATC	5 cut(s)	177, 201, 635, 771, 792
DpnII	GATC	5 cut(s)	175, 199, 633, 769, 790
EciI	GGCGGA	2 cut(s)	276, 477
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	255, 281
EcoRII	CCWGG	2 cut(s)	251, 640
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	3 cut(s)	88, 275, 373
FaiI	YATR	8 cut(s)	86, 273, 371, 428, 443, 543, 704, 892
FaqI	GGGAC	2 cut(s)	773, 868
FatI	CATG	3 cut(s)	84, 271, 369
FauI	CCCGC	3 cut(s)	383, 398, 495
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	5 cut(s)	126, 239, 480, 483, 498
FokI	GGATG	2 cut(s)	373, 590
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	5 cut(s)	126, 239, 480, 483, 498
FspBI	CTAG	2 cut(s)	573, 591
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	2 cut(s)	43, 450
GluI	GCNGC	5 cut(s)	126, 239, 480, 483, 498
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	5 cut(s)	258, 295, 307, 365, 674
HhaI	GCGC	2 cut(s)	44, 451
Hin1II	CATG	3 cut(s)	88, 275, 373
Hin6I	GCGC	2 cut(s)	42, 449
HinP1I	GCGC	2 cut(s)	42, 449
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	245, 699
HpaII	CCGG	5 cut(s)	258, 295, 307, 365, 674
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	2 cut(s)	10, 196
Hpy188I	TCNGA	7 cut(s)	75, 154, 285, 331, 420, 786, 811
Hpy188III	TCNNGA	2 cut(s)	584, 754
Hpy8I	GTNNAC	2 cut(s)	10, 196
Hpy99I	CGWCG	3 cut(s)	289, 292, 846
HpyAV	CCTTC	2 cut(s)	217, 483
HpyCH4III	ACNGT	2 cut(s)	610, 860
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	3 cut(s)	28, 479, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	783
HpySE526I	ACGT	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	88, 275, 373
HspAI	GCGC	2 cut(s)	42, 449
KpnI	GGTACC	1 cut(s)	236
KspI	CCGCGG	1 cut(s)	491
Kzo9I	GATC	5 cut(s)	175, 199, 633, 769, 790
LmnI	GCTCC	2 cut(s)	309, 464
Lsp1109I	GCAGC	3 cut(s)	469, 484, 491
LweI	GCATC	2 cut(s)	351, 577
MaeI	CTAG	2 cut(s)	573, 591
MaeII	ACGT	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	816
MalI	GATC	5 cut(s)	177, 201, 635, 771, 792
MboI	GATC	5 cut(s)	175, 199, 633, 769, 790
MboII	GAAGA	3 cut(s)	73, 449, 577
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	3 cut(s)	314, 551, 659
MluCI	AATT	3 cut(s)	137, 618, 627
MmeI	TCCRAC	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	3 cut(s)	482, 490, 830
MspI	CCGG	5 cut(s)	258, 295, 307, 365, 674
MspR9I	CCNGG	4 cut(s)	253, 307, 642, 674
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	2 cut(s)	253, 642
MvnI	CGCG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	2 cut(s)	307, 674
NdeII	GATC	5 cut(s)	175, 199, 633, 769, 790
NlaIII	CATG	3 cut(s)	88, 275, 373
NlaIV	GGNNCC	5 cut(s)	95, 234, 311, 410, 550
NmeAIII	GCCGAG	1 cut(s)	154
NsbI	TGCGCA	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	245, 699
PflMI	CCANNNNNTGG	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	5 cut(s)	127, 240, 481, 484, 499
Psp6I	CCWGG	2 cut(s)	251, 640
PspGI	CCWGG	2 cut(s)	251, 640
PspN4I	GGNNCC	5 cut(s)	95, 234, 311, 410, 550
PspPI	GGNCC	2 cut(s)	255, 281
PstI	CTGCAG	2 cut(s)	30, 481
PvuII	CAGCTG	2 cut(s)	482, 830
RsaI	GTAC	4 cut(s)	197, 206, 234, 526
RsaNI	GTAC	4 cut(s)	196, 205, 233, 525
RseI	CAYNNNNRTG	1 cut(s)	276
SacII	CCGCGG	1 cut(s)	491
SalI	GTCGAC	1 cut(s)	8
SatI	GCNGC	5 cut(s)	126, 239, 480, 483, 498
Sau3AI	GATC	5 cut(s)	175, 199, 633, 769, 790
Sau96I	GGNCC	2 cut(s)	255, 281
ScrFI	CCNGG	4 cut(s)	253, 307, 642, 674
SduI	GDGCHC	3 cut(s)	314, 551, 659
SfaNI	GCATC	2 cut(s)	351, 577
SfcI	CTRYAG	2 cut(s)	26, 477
Sfr303I	CCGCGG	1 cut(s)	491
SgrBI	CCGCGG	1 cut(s)	491
SinI	GGWCC	2 cut(s)	255, 281
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	3 cut(s)	137, 618, 627
SspMI	CTAG	2 cut(s)	573, 591
StyD4I	CCNGG	4 cut(s)	251, 305, 640, 672
TaaI	ACNGT	2 cut(s)	610, 860
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	3 cut(s)	9, 395, 841
TasI	AATT	3 cut(s)	137, 618, 627
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	2 cut(s)	128, 241
TfiI	GAWTC	2 cut(s)	245, 699
TscAI	CASTG	2 cut(s)	198, 615
TseI	GCWGC	3 cut(s)	479, 482, 497
TspDTI	ATGAA	3 cut(s)	101, 578, 702
TspRI	CASTG	2 cut(s)	198, 615
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	255, 281
XapI	RAATTY	2 cut(s)	137, 618
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	2 cut(s)	573, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.