Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

18329458 .. 18330928

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCCGTCGATTACTACAAGCTTCTTCAAGTTCAACGAAACGCCAAAGACGACGACTTGAGGAAAGCCACCGAGGCCAAGCTCAATCTAATCAACGATGCCTACGAGGTTTTGAGTGATCCCAGAAAGCGAGCGGTGTACGATCAGCAGGGCGAGGAGGGTTTGAGGAGAGGGGCAGCGCAGCCTTCTCATTCACCCGGGTCTGGCGGCATGAACGGCAGGTGCCCTGACCCATTCACGCAGTTTTTCGGGGCAGGGACCGGCAGGTCTCGGGTTACGGAGTCCGTGAAACCGGAAGATATATTCTCGACGTTTTACGGCGGAGGGACGATAGGAGGAAATGGATTCCAGTCGTTTGCATGGACGGACTCAGGACCTGGAAGTGGGCCGAGGAAAGCCGCGGCGATTGAGACGACATTACCTTGTACTTTAGAGGAACTGTATAAGGGCGCCACCAAGAAGCTGAAGATTTCTAGGGATGTTCTTGGTGCTAGTGGAAGAAAAAGCATAGTGGAGGAAGTTCTAACAATCGAGATCAAGCCAGGGTGGAAAAAGGGCACAAAAATCACTTTCCAAGAGAAAGGGCACGACACACGGCGAGGTGTGATACCAGCAGACATTGTCTTCATCGTCGATGAGAAGCCTCACGGTGTTTACAAGAGGGACGGGGACGATCTGATTGTCATTCAGAAGATCTCTCTCGCGGAGGCTCTGACGGGTCACACCGCGCAGCTGACAGCCCTAGACGGGAGAAATTTGAGTGTCTCTGTTGATTCCATTATCAGCCAGACCCATGAAGAAGTGGTTAGAGGGGAGGGGATGCCTATCCAGAAGGAACAATCCAAGAAGGGGAACTTGATTGTCAAGTTTAGCGTCAAGTTCCCCAAGCTCACCCCGGAGCAGAAAACCGGCATCAGAATGTTGCTGACATCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

313

Amino Acids

34.05

Weight (kDa)

9.11

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	210
AasI	GACNNNNNNGTC	1 cut(s)	265
Acc36I	ACCTGC	2 cut(s)	210, 255
AccB1I	GGYRCC	2 cut(s)	222, 449
AccBSI	CCGCTC	1 cut(s)	134
AccII	CGCG	3 cut(s)	401, 704, 728
AciI	CCGC	7 cut(s)	134, 207, 321, 399, 401, 704, 726
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	2 cut(s)	140, 427
AfiI	CCNNNNNNNGG	4 cut(s)	203, 383, 747, 849
AgsI	TTSAA	2 cut(s)	29, 35
AjnI	CCWGG	2 cut(s)	376, 541
AluBI	AGCT	5 cut(s)	22, 82, 463, 733, 889
AluI	AGCT	5 cut(s)	22, 82, 463, 733, 889
Alw26I	GTCTC	3 cut(s)	273, 404, 769
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	2 cut(s)	197, 270
AoxI	GGCC	2 cut(s)	75, 386
ApeKI	GCWGC	3 cut(s)	176, 181, 730
ApoI	RAATTY	1 cut(s)	754
AspLEI	GCGC	3 cut(s)	181, 452, 730
AspS9I	GGNCC	3 cut(s)	258, 374, 386
AsuC2I	CCSGG	3 cut(s)	198, 199, 896
AsuHPI	GGTGA	2 cut(s)	186, 883
AvaI	CYCGRG	2 cut(s)	197, 270
AvaII	GGWCC	2 cut(s)	258, 374
BaeGI	GKGCMC	3 cut(s)	227, 560, 588
BanI	GGYRCC	2 cut(s)	222, 449
BbsI	GAAGAC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	188, 193, 742
BceAI	ACGGC	3 cut(s)	232, 334, 611
BciT130I	CCWGG	2 cut(s)	378, 543
BcnI	CCSGG	3 cut(s)	198, 199, 896
BcoDI	GTCTC	3 cut(s)	273, 404, 769
BfaI	CTAG	3 cut(s)	474, 492, 743
BfoI	RGCGCY	1 cut(s)	453
BfuAI	ACCTGC	2 cut(s)	210, 255
BglI	GCCNNNNNGGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	6 cut(s)	177, 182, 208, 399, 402, 731
BlsI	GCNGC	6 cut(s)	178, 183, 209, 400, 403, 732
Bme1390I	CCNGG	5 cut(s)	198, 199, 378, 543, 896
Bme18I	GGWCC	2 cut(s)	258, 374
BmeT110I	CYCGRG	2 cut(s)	197, 270
BmgT120I	GGNCC	3 cut(s)	258, 374, 386
BmiI	GGNNCC	3 cut(s)	224, 259, 451
BmrFI	CCNGG	5 cut(s)	198, 199, 378, 543, 896
BmsI	GCATC	3 cut(s)	88, 810, 921
BpiI	GAAGAC	1 cut(s)	616
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	3 cut(s)	198, 199, 896
BsaBI	GATNNNNATC	1 cut(s)	824
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	6 cut(s)	72, 197, 389, 399, 542, 894
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 383, 747, 849
Bse118I	RCCGGY	2 cut(s)	260, 908
Bse1I	ACTGG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	824
BseBI	CCWGG	2 cut(s)	378, 543
BseDI	CCNNGG	6 cut(s)	72, 197, 389, 399, 542, 894
BseGI	GGATG	2 cut(s)	484, 825
BseJI	GATNNNNATC	1 cut(s)	824
BseLI	CCNNNNNNNGG	4 cut(s)	203, 383, 747, 849
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	2 cut(s)	170, 181
BseSI	GKGCMC	3 cut(s)	227, 560, 588
BseXI	GCAGC	3 cut(s)	188, 193, 742
Bsh1236I	CGCG	3 cut(s)	401, 704, 728
BshFI	GGCC	2 cut(s)	77, 388
BshNI	GGYRCC	2 cut(s)	222, 449
BsiHKCI	CYCGRG	2 cut(s)	197, 270
BsiSI	CCGG	5 cut(s)	198, 261, 293, 896, 909
BslFI	GGGAC	4 cut(s)	271, 340, 677, 683
BslI	CCNNNNNNNGG	4 cut(s)	203, 383, 747, 849
BsmAI	GTCTC	3 cut(s)	273, 404, 769
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	4 cut(s)	271, 340, 677, 683
BsnI	GGCC	2 cut(s)	77, 388
Bso31I	GGTCTC	1 cut(s)	273
BsoBI	CYCGRG	2 cut(s)	197, 270
Bsp1286I	GDGCHC	3 cut(s)	227, 560, 588
Bsp143I	GATC	5 cut(s)	118, 142, 534, 673, 693
BspACI	CCGC	7 cut(s)	134, 207, 321, 399, 401, 704, 726
BspANI	GGCC	2 cut(s)	77, 388
BspCNI	CTCAG	1 cut(s)	383
BspFNI	CGCG	3 cut(s)	401, 704, 728
BspLI	GGNNCC	3 cut(s)	224, 259, 451
BspMI	ACCTGC	2 cut(s)	210, 255
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	2 cut(s)	222, 449
BspTNI	GGTCTC	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	134
BsrFI	RCCGGY	2 cut(s)	260, 908
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	2 cut(s)	260, 908
BssECI	CCNNGG	6 cut(s)	72, 197, 389, 399, 542, 894
BssMI	GATC	5 cut(s)	118, 142, 534, 673, 693
BssNI	GRCGYC	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	378, 543
Bst4CI	ACNGT	2 cut(s)	441, 650
BstACI	GRCGYC	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	484, 825
BstFNI	CGCG	3 cut(s)	401, 704, 728
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	3 cut(s)	181, 452, 730
BstKTI	GATC	5 cut(s)	121, 145, 537, 676, 696
BstMAI	GTCTC	3 cut(s)	273, 404, 769
BstMBI	GATC	5 cut(s)	118, 142, 534, 673, 693
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 216
BstNI	CCWGG	2 cut(s)	378, 543
BstSCI	CCNGG	5 cut(s)	196, 197, 376, 541, 894
BstSLI	GKGCMC	3 cut(s)	227, 560, 588
BstUI	CGCG	3 cut(s)	401, 704, 728
BstV1I	GCAGC	3 cut(s)	188, 193, 742
BstV2I	GAAGAC	1 cut(s)	616
BstX2I	RGATCY	1 cut(s)	693
BstYI	RGATCY	1 cut(s)	693
BsuRI	GGCC	2 cut(s)	77, 388
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	484, 825
BveI	ACCTGC	2 cut(s)	210, 255
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	3 cut(s)	181, 452, 730
Cfr10I	RCCGGY	2 cut(s)	260, 908
Cfr13I	GGNCC	3 cut(s)	258, 374, 386
Cfr42I	CCGCGG	1 cut(s)	402
Cfr9I	CCCGGG	1 cut(s)	197
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	2 cut(s)	139, 426
CviAII	CATG	3 cut(s)	211, 360, 794
CviQI	GTAC	2 cut(s)	139, 426
DdeI	CTNAG	1 cut(s)	370
DinI	GGCGCC	1 cut(s)	451
DpnI	GATC	5 cut(s)	120, 144, 536, 675, 695
DpnII	GATC	5 cut(s)	118, 142, 534, 673, 693
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
EciI	GGCGGA	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	258, 374
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	2 cut(s)	197, 270
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	376, 541
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	3 cut(s)	214, 363, 797
FaiI	YATR	6 cut(s)	212, 302, 361, 444, 509, 795
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FaqI	GGGAC	4 cut(s)	271, 340, 677, 683
FatI	CATG	3 cut(s)	210, 359, 793
Fnu4HI	GCNGC	6 cut(s)	177, 182, 208, 399, 402, 731
FokI	GGATG	2 cut(s)	491, 832
Fsp4HI	GCNGC	6 cut(s)	177, 182, 208, 399, 402, 731
FspBI	CTAG	3 cut(s)	474, 492, 743
GlaI	GCGC	3 cut(s)	180, 451, 729
GluI	GCNGC	6 cut(s)	177, 182, 208, 399, 402, 731
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	77, 388
HapII	CCGG	5 cut(s)	198, 261, 293, 896, 909
HgaI	GACGC	1 cut(s)	862
HhaI	GCGC	3 cut(s)	181, 452, 730
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	214, 363, 797
Hin6I	GCGC	3 cut(s)	179, 450, 728
HinP1I	GCGC	3 cut(s)	179, 450, 728
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	281, 345, 368, 773
HpaII	CCGG	5 cut(s)	198, 261, 293, 896, 909
HphI	GGTGA	2 cut(s)	186, 883
Hpy166II	GTNNAC	2 cut(s)	139, 655
Hpy188I	TCNGA	4 cut(s)	678, 690, 714, 917
Hpy188III	TCNNGA	4 cut(s)	307, 372, 532, 829
Hpy8I	GTNNAC	2 cut(s)	139, 655
Hpy99I	CGWCG	4 cut(s)	11, 56, 313, 635
HpyAV	CCTTC	3 cut(s)	195, 826, 841
HpyCH4III	ACNGT	2 cut(s)	441, 650
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 216
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	1 cut(s)	311
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	214, 363, 797
HspAI	GCGC	3 cut(s)	179, 450, 728
KasI	GGCGCC	1 cut(s)	449
KspI	CCGCGG	1 cut(s)	402
Kzo9I	GATC	5 cut(s)	118, 142, 534, 673, 693
LmnI	GCTCC	1 cut(s)	898
Lsp1109I	GCAGC	3 cut(s)	188, 193, 742
LweI	GCATC	3 cut(s)	88, 810, 921
MaeI	CTAG	3 cut(s)	474, 492, 743
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	274, 719
MalI	GATC	5 cut(s)	120, 144, 536, 675, 695
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	5 cut(s)	118, 142, 534, 673, 693
MboII	GAAGA	7 cut(s)	17, 308, 478, 510, 616, 703, 809
MflI	RGATCY	1 cut(s)	693
MhlI	GDGCHC	3 cut(s)	227, 560, 588
MluCI	AATT	1 cut(s)	754
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	290, 362
MslI	CAYNNNNRTG	1 cut(s)	917
MspA1I	CMGCKG	2 cut(s)	401, 733
MspI	CCGG	5 cut(s)	198, 261, 293, 896, 909
MspR9I	CCNGG	5 cut(s)	198, 199, 378, 543, 896
MvaI	CCWGG	2 cut(s)	378, 543
MvnI	CGCG	3 cut(s)	401, 704, 728
MwoI	GCNNNNNNNGC	2 cut(s)	74, 216
NarI	GGCGCC	1 cut(s)	450
NciI	CCSGG	3 cut(s)	198, 199, 896
NdeII	GATC	5 cut(s)	118, 142, 534, 673, 693
NlaIII	CATG	3 cut(s)	214, 363, 797
NlaIV	GGNNCC	3 cut(s)	224, 259, 451
NmeAIII	GCCGAG	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	719
PaqCI	CACCTGC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 102
PfeI	GAWTC	2 cut(s)	345, 773
PflFI	GACNNNGTC	1 cut(s)	620
PkrI	GCNGC	6 cut(s)	178, 183, 209, 400, 403, 732
PleI	GAGTC	2 cut(s)	289, 362
PluTI	GGCGCC	1 cut(s)	453
PpsI	GAGTC	2 cut(s)	289, 362
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	376, 541
PspGI	CCWGG	2 cut(s)	376, 541
PspN4I	GGNNCC	3 cut(s)	224, 259, 451
PspPI	GGNCC	3 cut(s)	258, 374, 386
PspPPI	RGGWCCY	1 cut(s)	374
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	693
PsyI	GACNNNGTC	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	2 cut(s)	140, 427
RsaNI	GTAC	2 cut(s)	139, 426
RseI	CAYNNNNRTG	1 cut(s)	917
SacII	CCGCGG	1 cut(s)	402
SatI	GCNGC	6 cut(s)	177, 182, 208, 399, 402, 731
Sau3AI	GATC	5 cut(s)	118, 142, 534, 673, 693
Sau96I	GGNCC	3 cut(s)	258, 374, 386
SchI	GAGTC	2 cut(s)	290, 362
ScrFI	CCNGG	5 cut(s)	198, 199, 378, 543, 896
SduI	GDGCHC	3 cut(s)	227, 560, 588
SfaNI	GCATC	3 cut(s)	88, 810, 921
SfoI	GGCGCC	1 cut(s)	451
Sfr303I	CCGCGG	1 cut(s)	402
SgrBI	CCGCGG	1 cut(s)	402
SinI	GGWCC	2 cut(s)	258, 374
SmaI	CCCGGG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	754
SsiI	CCGC	7 cut(s)	134, 207, 321, 399, 401, 704, 726
SspDI	GGCGCC	1 cut(s)	449
SspMI	CTAG	3 cut(s)	474, 492, 743
StyD4I	CCNGG	5 cut(s)	196, 197, 376, 541, 894
TaaI	ACNGT	2 cut(s)	441, 650
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	4 cut(s)	9, 308, 531, 633
TasI	AATT	1 cut(s)	754
TatI	WGTACW	1 cut(s)	425
TauI	GCSGC	3 cut(s)	210, 401, 404
TfiI	GAWTC	2 cut(s)	345, 773
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	3 cut(s)	176, 181, 730
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	3 cut(s)	227, 616, 810
TspGWI	ACGGA	3 cut(s)	274, 293, 380
TspMI	CCCGGG	1 cut(s)	197
Tth111I	GACNNNGTC	1 cut(s)	620
VpaK11BI	GGWCC	2 cut(s)	258, 374
XapI	RAATTY	1 cut(s)	754
XmaI	CCCGGG	1 cut(s)	197
XspI	CTAG	3 cut(s)	474, 492, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.