Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

26097709 .. 26099126

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G278100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAGGGATCAGGGGTTTTCGGATCACGCAGCCATGAAGATCTATTCTCGTCGGCTTTCGAATGGAATTGCAACGCAGGGGCGTCACGGGCTGGCGGGTCTCGGAGACCGGACAATGACAGCGTGTTCAGCTTCGGCGACAAGACTTTTGTGCAGAGGGGAGGAGATAGGCCTAGGAAAGCTGTGGCCATAGAGAAGACATTGCCCTGCACTCTGGAGGACTTGTACAATGGCACCACCAAAAAGATGAAGATTTCTAGGGATGTTGTTGGTGCTAGTGGAAGAAAAAGCACAGTGGAGGAAGTTCTAACAATTGTGATCAAGCCCGGTTGGAAACAGGGCACCAAAATCACTTACCCAGAGAAAGGTCATGATGTGGAGCAAGGTGTTATACCAGCCGACATCATATTTACCATTGAAGAGAAGCCTCATGATTTTTTCAAGAGGCGTGGGGACGATCTCACCGTCACTCTGAACATATCCCTTGCGGAAGCTCTGACGGGTCACACGGCGCAGCTGGCAACCCTTGATGGGAGAAATCTGAGGGTCTCTATCGATTCAGTTATCAGTATCACCCATGAAGAAGTGGTTAAAGGGGAAGGGATGCCTATCCAGAAGGGACGAGGCAGAAAGGGTAACTTGATTCTCAAGTTTAACATCAAGATCCCCAAGCTTACCTCAGAGCAGAAAGCTGGCATCAGACAGCTATTAACATCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

241

Amino Acids

26.27

Weight (kDa)

9.3

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	233, 341
AciI	CCGC	2 cut(s)	96, 488
AclWI	GGATC	3 cut(s)	16, 31, 658
AcoI	YGGCCR	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	365, 531
AgsI	TTSAA	2 cut(s)	419, 442
AluBI	AGCT	7 cut(s)	132, 182, 494, 517, 673, 692, 706
AluI	AGCT	7 cut(s)	132, 182, 494, 517, 673, 692, 706
Alw26I	GTCTC	3 cut(s)	100, 105, 553
AlwI	GGATC	3 cut(s)	16, 31, 658
AoxI	GGCC	2 cut(s)	170, 186
ApeKI	GCWGC	2 cut(s)	30, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspA2I	CCTAGG	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	514
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	454, 565
AsuII	TTCGAA	1 cut(s)	60
AvrII	CCTAGG	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	233, 341
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	42, 526
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	1 cut(s)	525
BclI	TGATCA	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	100, 105, 553
BfaI	CTAG	3 cut(s)	174, 258, 276
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	2 cut(s)	31, 515
BlnI	CCTAGG	1 cut(s)	173
BlsI	GCNGC	2 cut(s)	32, 516
Bme1390I	CCNGG	1 cut(s)	327
BmiI	GGNNCC	2 cut(s)	235, 343
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	594, 705
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	608
BsaHI	GRCGYC	1 cut(s)	83
BsaI	GGTCTC	3 cut(s)	100, 105, 553
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 531
Bse3DI	GCAATG	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	608
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	173
BseGI	GGATG	2 cut(s)	268, 609
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	2 cut(s)	365, 531
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	533, 693
BseRI	GAGGAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	42, 526
BsgI	GTGCAG	2 cut(s)	173, 193
BshFI	GGCC	2 cut(s)	172, 188
BshNI	GGYRCC	2 cut(s)	233, 341
BshVI	ATCGAT	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	110, 327
BslFI	GGGAC	2 cut(s)	467, 633
BslI	CCNNNNNNNGG	2 cut(s)	365, 531
BsmAI	GTCTC	3 cut(s)	100, 105, 553
BsmFI	GGGAC	2 cut(s)	467, 633
BsnI	GGCC	2 cut(s)	172, 188
Bso31I	GGTCTC	3 cut(s)	100, 105, 553
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	225
Bsp143I	GATC	6 cut(s)	8, 23, 40, 318, 457, 663
BspACI	CCGC	2 cut(s)	96, 488
BspANI	GGCC	2 cut(s)	172, 188
BspCNI	CTCAG	2 cut(s)	534, 692
BspDI	ATCGAT	1 cut(s)	555
BspHI	TCATGA	2 cut(s)	370, 430
BspLI	GGNNCC	2 cut(s)	235, 343
BspPI	GGATC	3 cut(s)	16, 31, 658
BspT104I	TTCGAA	1 cut(s)	60
BspT107I	GGYRCC	2 cut(s)	233, 341
BspTNI	GGTCTC	3 cut(s)	100, 105, 553
BsrDI	GCAATG	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	6 cut(s)	8, 23, 40, 318, 457, 663
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	295, 466
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	94, 519, 694
BstDEI	CTNAG	2 cut(s)	542, 679
BstF5I	GGATG	2 cut(s)	268, 609
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	6 cut(s)	11, 26, 43, 321, 460, 666
BstMAI	GTCTC	3 cut(s)	100, 105, 553
BstMBI	GATC	6 cut(s)	8, 23, 40, 318, 457, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 129, 518
BstSCI	CCNGG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	42, 526
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	40, 663
BstYI	RGATCY	2 cut(s)	40, 663
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	172, 188
BsuTUI	ATCGAT	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	268, 609
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	3 cut(s)	94, 519, 694
CciI	TCATGA	2 cut(s)	370, 430
CfoI	GCGC	1 cut(s)	514
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	226
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	4 cut(s)	35, 371, 431, 578
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	542, 679
DpnI	GATC	6 cut(s)	10, 25, 42, 320, 459, 665
DpnII	GATC	6 cut(s)	8, 23, 40, 318, 457, 663
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	172
Eco31I	GGTCTC	3 cut(s)	100, 105, 553
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	4 cut(s)	38, 374, 434, 581
FaiI	YATR	9 cut(s)	36, 191, 372, 392, 407, 432, 479, 579, 721
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	2 cut(s)	467, 633
FatI	CATG	4 cut(s)	34, 370, 430, 577
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	31, 515
FokI	GGATG	2 cut(s)	275, 616
Fsp4HI	GCNGC	2 cut(s)	31, 515
FspBI	CTAG	3 cut(s)	174, 258, 276
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	2 cut(s)	31, 515
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	172, 188
HapII	CCGG	2 cut(s)	110, 327
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	38, 374, 434, 581
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	2 cut(s)	557, 643
HpaII	CCGG	2 cut(s)	110, 327
HphI	GGTGA	2 cut(s)	454, 565
Hpy188I	TCNGA	7 cut(s)	23, 105, 474, 498, 543, 682, 701
Hpy188III	TCNNGA	6 cut(s)	215, 371, 431, 442, 613, 661
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	593, 610
HpyCH4III	ACNGT	2 cut(s)	295, 466
HpyCH4V	TGCA	3 cut(s)	72, 154, 210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 129, 518
HpyF3I	CTNAG	2 cut(s)	542, 679
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	38, 374, 434, 581
HspAI	GCGC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	6 cut(s)	8, 23, 40, 318, 457, 663
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	42, 526
LweI	GCATC	2 cut(s)	594, 705
MaeI	CTAG	3 cut(s)	174, 258, 276
MaeIII	GTNAC	4 cut(s)	84, 466, 503, 635
MalI	GATC	6 cut(s)	10, 25, 42, 320, 459, 665
MboI	GATC	6 cut(s)	8, 23, 40, 318, 457, 663
MboII	GAAGA	7 cut(s)	50, 208, 262, 294, 431, 593, 708
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	2 cut(s)	40, 663
MhlI	GDGCHC	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	67, 312
MluNI	TGGCCA	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	9 cut(s)	150, 155, 211, 292, 438, 438, 537, 617, 688
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	3 cut(s)	591, 654, 710
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	2 cut(s)	110, 327
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	89, 129, 518
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	6 cut(s)	8, 23, 40, 318, 457, 663
NlaIII	CATG	4 cut(s)	38, 374, 434, 581
NlaIV	GGNNCC	2 cut(s)	235, 343
NmuCI	GTSAC	3 cut(s)	84, 466, 503
NspV	TTCGAA	1 cut(s)	60
PagI	TCATGA	2 cut(s)	370, 430
PceI	AGGCCT	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	557, 643
PkrI	GCNGC	2 cut(s)	32, 516
PspN4I	GGNNCC	2 cut(s)	235, 343
PsuI	RGATCY	2 cut(s)	40, 663
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	3 cut(s)	591, 654, 710
SatI	GCNGC	2 cut(s)	31, 515
Sau3AI	GATC	6 cut(s)	8, 23, 40, 318, 457, 663
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	2 cut(s)	594, 705
SfuI	TTCGAA	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	2 cut(s)	67, 312
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	2 cut(s)	96, 488
SspMI	CTAG	3 cut(s)	174, 258, 276
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	295, 466
TaqI	TCGA	2 cut(s)	60, 555
TasI	AATT	2 cut(s)	67, 312
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	557, 643
Tru1I	TTAA	3 cut(s)	591, 654, 710
Tru9I	TTAA	3 cut(s)	591, 654, 710
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	3 cut(s)	84, 466, 503
TseI	GCWGC	2 cut(s)	30, 514
Tsp45I	GTSAC	3 cut(s)	84, 466, 503
TspDTI	ATGAA	4 cut(s)	51, 263, 594, 708
TspRI	CASTG	1 cut(s)	300
XmaJI	CCTAGG	1 cut(s)	173
XspI	CTAG	3 cut(s)	174, 258, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.