Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

18324983 .. 18327997

Gene Structure 3015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGGGTCGATTACTACAAGGTTCTGCAGGTAGAACGAAGCGCCAAAGACGATGACTTGAAGAAAGCTTATCGGAAGCTCGCCATGAAGTGGCACCCAGATAAAAACCCTAACAACAAGAAGGCCGCTGAGGCCAAATTCAAGCAAATCTCGGAAGCCTACGATGTTTTGAGTGATCCCCAAAAGAGGGCAGTATACGATCAGTACGGAGAGGAGGGGTTGAAAGGAGGGGTGCCGCCGCCCGATTCGTCATGGTCTGGCGTGCAAGGGCAGGATGGCGGTCCGACGACGTTCCGGTTCAACACTCGGAGCCCTGACGATATTTTCTCTGAAATTTTCGGGTTTTCGGGTTTTGGAGGGATGCCGGACATGGGCGGGTCAAGGGCAGGCGGGTCGAGGGCTGGCGGGAACCCGTTTCCGAGGAGTATGTTTGGGGAAGACATATTTGCTCAGTTTAGAGGCGGAGCAGAGCCTTCTGCAGCTGCGCTGAGGAAAGCTGCACCGATAGAGAGGACGTTGCCTTGTACTTTGGAGGATTTGTTTAAGGGCACCACCAAAAAGATGAAGATTTCTAGGGATGTTCCTGATGCTAGTGGGAGAACTACCACGGTGGAGGAAATTCTAACAATTGAGATCAAGCCAGGGTGGAAAAAGGGCACAAAAATCACTTTCCCAGAGAAAGGGAATGAGCAGAGAGGGATCATACCAGCAGACCTTGTATTTATCATTGATGAGAAGCCTCACACCCTTTTCAATAGGGATGGGAACGATCTTACAATCACTCAGAAGATATCTCTTGCAGAAGCTTTGACAGGTTACACGGCACAGCTGACAACCCTCGATGGGAGAAATTTTACAGTCCCCATCACCAATATCATCAGTCCCACCTATGAAGAAGTGGTTAAAGGGGAGGGGATGCCTATTCCCAAGGAGCCATCCAAAAGGGGAAACTTGAGAATCAAGTTCAACATCAAGTTCCCTACGAAGCTTACCTCGGACCAAAAATCCAACATCAAACGGTTATTAACATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

345

Amino Acids

37.93

Weight (kDa)

9.26

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	3 cut(s)	93, 232, 548
AccB7I	CCANNNNNTGG	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	8 cut(s)	126, 236, 239, 279, 375, 390, 405, 462
AclWI	GGATC	2 cut(s)	170, 707
AcsI	RAATTY	4 cut(s)	137, 333, 618, 850
AfaI	GTAC	2 cut(s)	206, 526
AfiI	CCNNNNNNNGG	6 cut(s)	90, 186, 187, 371, 680, 843
AgsI	TTSAA	6 cut(s)	61, 142, 223, 301, 754, 967
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	7 cut(s)	68, 79, 482, 497, 806, 829, 988
AluI	AGCT	7 cut(s)	68, 79, 482, 497, 806, 829, 988
AlwI	GGATC	2 cut(s)	170, 707
AoxI	GGCC	2 cut(s)	123, 132
ApeKI	GCWGC	3 cut(s)	479, 482, 497
ApoI	RAATTY	4 cut(s)	137, 333, 618, 850
AspLEI	GCGC	2 cut(s)	44, 487
AspS9I	GGNCC	2 cut(s)	281, 997
AsuHPI	GGTGA	1 cut(s)	859
AvaII	GGWCC	2 cut(s)	281, 997
BaeGI	GKGCMC	2 cut(s)	551, 659
BanI	GGYRCC	3 cut(s)	93, 232, 548
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	444
BbvCI	CCTCAGC	2 cut(s)	129, 488
BbvI	GCAGC	3 cut(s)	469, 484, 491
BccI	CCATC	5 cut(s)	269, 755, 836, 872, 943
BceAI	ACGGC	1 cut(s)	837
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	1 cut(s)	642
BfaI	CTAG	2 cut(s)	573, 591
BfmI	CTRYAG	2 cut(s)	26, 477
BfoI	RGCGCY	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	19
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	6 cut(s)	126, 236, 239, 480, 483, 498
BlsI	GCNGC	6 cut(s)	127, 237, 240, 481, 484, 499
Bme1390I	CCNGG	1 cut(s)	642
Bme18I	GGWCC	2 cut(s)	281, 997
BmgT120I	GGNCC	2 cut(s)	281, 997
BmiI	GGNNCC	6 cut(s)	95, 234, 311, 410, 550, 933
BmrFI	CCNGG	1 cut(s)	642
BmsI	GCATC	3 cut(s)	351, 577, 906
BpiI	GAAGAC	1 cut(s)	444
Bpu10I	CCTNAGC	2 cut(s)	129, 488
BpuEI	CTTGAG	1 cut(s)	973
BsaJI	CCNNGG	5 cut(s)	419, 606, 641, 927, 993
BsaWI	WCCGGW	1 cut(s)	294
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	6 cut(s)	90, 186, 187, 371, 680, 843
BseBI	CCWGG	1 cut(s)	642
BseDI	CCNNGG	5 cut(s)	419, 606, 641, 927, 993
BseGI	GGATG	6 cut(s)	280, 366, 583, 766, 921, 935
BseLI	CCNNNNNNNGG	6 cut(s)	90, 186, 187, 371, 680, 843
BseMII	CTCAG	4 cut(s)	120, 464, 479, 797
BseRI	GAGGAG	2 cut(s)	227, 436
BseSI	GKGCMC	2 cut(s)	551, 659
BseXI	GCAGC	3 cut(s)	469, 484, 491
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	125, 134
BshNI	GGYRCC	3 cut(s)	93, 232, 548
BsiSI	CCGG	2 cut(s)	295, 365
BslFI	GGGAC	2 cut(s)	845, 867
BslI	CCNNNNNNNGG	6 cut(s)	90, 186, 187, 371, 680, 843
BsmFI	GGGAC	2 cut(s)	845, 867
BsnI	GGCC	2 cut(s)	125, 134
Bsp1286I	GDGCHC	3 cut(s)	314, 551, 659
Bsp143I	GATC	5 cut(s)	175, 199, 633, 699, 769
BspACI	CCGC	8 cut(s)	126, 236, 239, 279, 375, 390, 405, 462
BspANI	GGCC	2 cut(s)	125, 134
BspCNI	CTCAG	4 cut(s)	121, 463, 480, 796
BspLI	GGNNCC	6 cut(s)	95, 234, 311, 410, 550, 933
BspMAI	CTGCAG	2 cut(s)	30, 481
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	170, 707
BspT107I	GGYRCC	3 cut(s)	93, 232, 548
BssECI	CCNNGG	5 cut(s)	419, 606, 641, 927, 993
BssMI	GATC	5 cut(s)	175, 199, 633, 699, 769
BssNAI	GTATAC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	927
Bst1107I	GTATAC	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	3 cut(s)	610, 859, 1020
BstC8I	GCNNGC	4 cut(s)	81, 263, 388, 403
BstDEI	CTNAG	5 cut(s)	129, 450, 488, 783, 1032
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	6 cut(s)	280, 366, 583, 766, 921, 935
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	44, 487
BstKTI	GATC	5 cut(s)	178, 202, 636, 702, 772
BstMBI	GATC	5 cut(s)	175, 199, 633, 699, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	642
BstSCI	CCNGG	1 cut(s)	640
BstSFI	CTRYAG	2 cut(s)	26, 477
BstSLI	GKGCMC	2 cut(s)	551, 659
BstV1I	GCAGC	3 cut(s)	469, 484, 491
BstV2I	GAAGAC	1 cut(s)	444
BstZ17I	GTATAC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	125, 134
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	6 cut(s)	280, 366, 583, 766, 921, 935
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	81, 263, 388, 403
CfoI	GCGC	2 cut(s)	44, 487
Cfr13I	GGNCC	2 cut(s)	281, 997
CpoI	CGGWCCG	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	205, 525
CspI	CGGWCCG	1 cut(s)	281
CviAII	CATG	3 cut(s)	85, 252, 370
CviQI	GTAC	2 cut(s)	205, 525
DdeI	CTNAG	5 cut(s)	129, 450, 488, 783, 1032
DpnI	GATC	5 cut(s)	177, 201, 635, 701, 771
DpnII	GATC	5 cut(s)	175, 199, 633, 699, 769
EciI	GGCGGA	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	927
Eco24I	GRGCYC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	792
Eco47I	GGWCC	2 cut(s)	281, 997
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	792
EcoT14I	CCWWGG	1 cut(s)	927
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	3 cut(s)	88, 255, 373
FaiI	YATR	8 cut(s)	86, 196, 253, 371, 428, 443, 704, 891
FaqI	GGGAC	2 cut(s)	845, 867
FatI	CATG	3 cut(s)	84, 251, 369
FauI	CCCGC	3 cut(s)	368, 383, 398
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	6 cut(s)	126, 236, 239, 480, 483, 498
FokI	GGATG	6 cut(s)	287, 373, 590, 773, 922, 928
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	6 cut(s)	126, 236, 239, 480, 483, 498
FspBI	CTAG	2 cut(s)	573, 591
GlaI	GCGC	2 cut(s)	43, 486
GluI	GCNGC	6 cut(s)	126, 236, 239, 480, 483, 498
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	125, 134
HapII	CCGG	2 cut(s)	295, 365
HhaI	GCGC	2 cut(s)	44, 487
Hin1II	CATG	3 cut(s)	88, 255, 373
Hin6I	GCGC	2 cut(s)	42, 485
HinP1I	GCGC	2 cut(s)	42, 485
HindIII	AAGCTT	3 cut(s)	66, 804, 986
HinfI	GANTC	2 cut(s)	245, 957
HpaII	CCGG	2 cut(s)	295, 365
HphI	GGTGA	1 cut(s)	859
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	8 cut(s)	75, 154, 285, 309, 331, 420, 786, 997
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	289, 292
HpyAV	CCTTC	2 cut(s)	115, 483
HpyCH4III	ACNGT	3 cut(s)	610, 859, 1020
HpyCH4IV	ACGT	2 cut(s)	290, 515
HpyCH4V	TGCA	5 cut(s)	28, 265, 479, 500, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	5 cut(s)	129, 450, 488, 783, 1032
HpySE526I	ACGT	2 cut(s)	290, 515
Hsp92II	CATG	3 cut(s)	88, 255, 373
HspAI	GCGC	2 cut(s)	42, 485
Kzo9I	GATC	5 cut(s)	175, 199, 633, 699, 769
LmnI	GCTCC	3 cut(s)	309, 464, 931
Lsp1109I	GCAGC	3 cut(s)	469, 484, 491
LweI	GCATC	3 cut(s)	351, 577, 906
MaeI	CTAG	2 cut(s)	573, 591
MaeII	ACGT	2 cut(s)	290, 515
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	5 cut(s)	177, 201, 635, 701, 771
MboI	GATC	5 cut(s)	175, 199, 633, 699, 769
MboII	GAAGA	5 cut(s)	73, 449, 577, 799, 905
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	3 cut(s)	314, 551, 659
MluCI	AATT	5 cut(s)	137, 333, 618, 627, 850
MmeI	TCCRAC	2 cut(s)	308, 1032
MseI	TTAA	3 cut(s)	543, 903, 1025
MspA1I	CMGCKG	3 cut(s)	128, 482, 829
MspI	CCGG	2 cut(s)	295, 365
MspR9I	CCNGG	1 cut(s)	642
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	5 cut(s)	175, 199, 633, 699, 769
NlaIII	CATG	3 cut(s)	88, 255, 373
NlaIV	GGNNCC	6 cut(s)	95, 234, 311, 410, 550, 933
PfeI	GAWTC	2 cut(s)	245, 957
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	6 cut(s)	127, 237, 240, 481, 484, 499
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	6 cut(s)	95, 234, 311, 410, 550, 933
PspPI	GGNCC	2 cut(s)	281, 997
PstI	CTGCAG	2 cut(s)	30, 481
PvuII	CAGCTG	2 cut(s)	482, 829
RsaI	GTAC	2 cut(s)	206, 526
RsaNI	GTAC	2 cut(s)	205, 525
Rsr2I	CGGWCCG	1 cut(s)	281
RsrII	CGGWCCG	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	543, 903, 1025
SatI	GCNGC	6 cut(s)	126, 236, 239, 480, 483, 498
Sau3AI	GATC	5 cut(s)	175, 199, 633, 699, 769
Sau96I	GGNCC	2 cut(s)	281, 997
ScrFI	CCNGG	1 cut(s)	642
SduI	GDGCHC	3 cut(s)	314, 551, 659
SfaNI	GCATC	3 cut(s)	351, 577, 906
SfcI	CTRYAG	2 cut(s)	26, 477
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
SinI	GGWCC	2 cut(s)	281, 997
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
Sse9I	AATT	5 cut(s)	137, 333, 618, 627, 850
SsiI	CCGC	8 cut(s)	126, 236, 239, 279, 375, 390, 405, 462
SspMI	CTAG	2 cut(s)	573, 591
StyD4I	CCNGG	1 cut(s)	640
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	3 cut(s)	610, 859, 1020
TaiI	ACGT	2 cut(s)	293, 518
TaqI	TCGA	3 cut(s)	9, 395, 840
TasI	AATT	5 cut(s)	137, 333, 618, 627, 850
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	3 cut(s)	128, 238, 241
TfiI	GAWTC	2 cut(s)	245, 957
Tru1I	TTAA	3 cut(s)	543, 903, 1025
Tru9I	TTAA	3 cut(s)	543, 903, 1025
TseI	GCWGC	3 cut(s)	479, 482, 497
TspDTI	ATGAA	3 cut(s)	101, 578, 906
TspGWI	ACGGA	1 cut(s)	222
Van91I	CCANNNNNTGG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	281, 997
XapI	RAATTY	4 cut(s)	137, 333, 618, 850
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	573, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.