Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003984

Physical Location & Seq

Genomic Coordinates Forward (+)

24205949 .. 24206580

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1154100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTCTTTTTTATTTGGTGCAGAAGAAAAAGCACAGTGGAGGAAGTTCTAACAATCGAGATCAAGCCGGGATGGAAAAAGGGCACGAAGATCACTTTCCAAGAGAAAGGGCCCGACACACGGCGAGGTGTGATACCAGCAGACATTGTCTTCATCGTCGATGAGAAGCCTCACAGTGTTTTCAAGAGGGACGGGGACAATCTGATTGTCACTCAGAAGGTCTCTCTCGCGGAGGCTCTGGCGGGTTACACCGCGCAGCTGACAGCCCTAGACGGGAGAAATCTGAGAGTCTCTATCGATTCCGTTATCAGCCAGGCCCATGAAGAAGTGGTTAGAGGGGAAGGGATGCCTATCCAGAAGGAACAATCCAAGAAGGGGAACTTGATTGTCAAGTTTAGCGTCAAGATCCCGAAGCTCACCTCAGAGCAGAAAACCGGCATCAGAATGTTGCTGACATCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001578 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005929 GO:0005930 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0031514 GO:0032838 GO:0035082 GO:0036126 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044782 GO:0060271 GO:0070925 GO:0071840 GO:0097014 GO:0097223 GO:0097224 GO:0097729 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1904158

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C

Protein Analysis

155

Amino Acids

17.3

Weight (kDa)

9.64

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	13 - 137	1.7e-32	DnaJ C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08910 AT5G01390 AT5G01390 AT5G01390 AT5G01390
fragaria_vesca	FvH4_6g11390 FvH4_6g11390
malus_domestica	MD04G1153800.v1.1 MD04G1153900.v1.1 MD04G1154100.v1.1 MD12G1167100.v1.1 MD12G1167200.v1.1 MD12G1167300.v1.1 MD12G1167400.v1.1
prunus_persica	Prupe.6G277900_v2.0.a1 Prupe.6G278000_v2.0.a1 Prupe.6G278100_v2.0.a1
pyrus_communis	pycom04g13900 pycom04g13910 pycom12g15900 pycom12g15910 pycom12g15920
rosa_chinensis	RchiOBHm_Chr3g0463011
rosa_laevigata	RLG00000024817
rosa_multiflora	Rmu_co8042996.1_g000001 Rmu_sc0000766.1_g000028
rosa_roxburghii	Rroxscaffold_6G00417050
rosa_rugosa	Rorug03G0061000
rosa_samantha	Rh3AG118700 Rh3BG123800 Rh3CG125400 Rh3DG124600
rosa_wichuraiana	Rw3G010080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	230, 254
AciI	CCGC	3 cut(s)	230, 242, 252
AclWI	GGATC	1 cut(s)	400
AfiI	CCNNNNNNNGG	3 cut(s)	120, 273, 375
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	2 cut(s)	259, 415
AluI	AGCT	2 cut(s)	259, 415
Alw26I	GTCTC	2 cut(s)	226, 295
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	2 cut(s)	110, 315
ApaI	GGGCCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	110, 111, 316
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	409
BaeGI	GKGCMC	2 cut(s)	86, 114
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	226, 295
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	2 cut(s)	69, 314
BmgT120I	GGNCC	3 cut(s)	110, 111, 316
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	69, 314
BmsI	GCATC	2 cut(s)	336, 447
BpiI	GAAGAC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 273, 375
Bse118I	RCCGGY	1 cut(s)	434
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	297
BseGI	GGATG	2 cut(s)	77, 351
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	3 cut(s)	120, 273, 375
BseMII	CTCAG	3 cut(s)	227, 275, 435
BseSI	GKGCMC	2 cut(s)	86, 114
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	230, 254
BshFI	GGCC	2 cut(s)	112, 317
BshVI	ATCGAT	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	68, 435
BslFI	GGGAC	2 cut(s)	203, 209
BslI	CCNNNNNNNGG	3 cut(s)	120, 273, 375
BsmAI	GTCTC	2 cut(s)	226, 295
BsmFI	GGGAC	2 cut(s)	203, 209
BsnI	GGCC	2 cut(s)	112, 317
Bso31I	GGTCTC	1 cut(s)	226
Bsp120I	GGGCCC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	86, 114
Bsp143I	GATC	3 cut(s)	60, 90, 405
BspACI	CCGC	3 cut(s)	230, 242, 252
BspANI	GGCC	2 cut(s)	112, 317
BspCNI	CTCAG	3 cut(s)	226, 276, 434
BspDI	ATCGAT	1 cut(s)	297
BspFNI	CGCG	2 cut(s)	230, 254
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	434
BssMI	GATC	3 cut(s)	60, 90, 405
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	37, 176
BstDEI	CTNAG	3 cut(s)	213, 284, 421
BstF5I	GGATG	2 cut(s)	77, 351
BstFNI	CGCG	2 cut(s)	230, 254
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	3 cut(s)	63, 93, 408
BstMAI	GTCTC	2 cut(s)	226, 295
BstMBI	GATC	3 cut(s)	60, 90, 405
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	67, 312
BstSLI	GKGCMC	2 cut(s)	86, 114
BstUI	CGCG	2 cut(s)	230, 254
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	112, 317
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	77, 351
BtsIMutI	CAGTG	2 cut(s)	42, 181
CfoI	GCGC	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	3 cut(s)	110, 111, 316
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	388
CviAII	CATG	1 cut(s)	320
CviJI	RGCY	9 cut(s)	67, 112, 169, 236, 259, 266, 312, 317, 415
CviKI_1	RGCY	9 cut(s)	67, 112, 169, 236, 259, 266, 312, 317, 415
DdeI	CTNAG	3 cut(s)	213, 284, 421
DpnI	GATC	3 cut(s)	62, 92, 407
DpnII	GATC	3 cut(s)	60, 90, 405
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	323
FaiI	YATR	1 cut(s)	321
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	2 cut(s)	203, 209
FatI	CATG	1 cut(s)	319
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	2 cut(s)	84, 358
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	257
HaeIII	GGCC	2 cut(s)	112, 317
HapII	CCGG	2 cut(s)	68, 435
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	2 cut(s)	288, 299
HpaII	CCGG	2 cut(s)	68, 435
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	5 cut(s)	204, 216, 285, 424, 443
Hpy188III	TCNNGA	5 cut(s)	58, 184, 355, 403, 409
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	4 cut(s)	211, 335, 352, 367
HpyCH4III	ACNGT	2 cut(s)	37, 176
HpyCH4V	TGCA	1 cut(s)	21
HpyF3I	CTNAG	3 cut(s)	213, 284, 421
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	60, 90, 405
LpnPI	CCDG	7 cut(s)	81, 150, 224, 299, 326, 368, 448
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	336, 447
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	208, 245
MalI	GATC	3 cut(s)	62, 92, 407
MboI	GATC	3 cut(s)	60, 90, 405
MboII	GAAGA	4 cut(s)	36, 100, 142, 335
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	2 cut(s)	86, 114
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	7 cut(s)	34, 119, 180, 180, 226, 329, 430
MslI	CAYNNNNRTG	2 cut(s)	443, 460
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	2 cut(s)	68, 435
MspR9I	CCNGG	2 cut(s)	69, 314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	230, 254
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	3 cut(s)	60, 90, 405
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	299
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	258
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	112
PspOMI	GGGCCC	1 cut(s)	110
PspPI	GGNCC	3 cut(s)	110, 111, 316
PsuI	RGATCY	1 cut(s)	405
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	443, 460
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	3 cut(s)	60, 90, 405
Sau96I	GGNCC	3 cut(s)	110, 111, 316
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	2 cut(s)	69, 314
SduI	GDGCHC	2 cut(s)	86, 114
SetI	ASST	5 cut(s)	130, 222, 261, 417, 422
SfaNI	GCATC	2 cut(s)	336, 447
SmiMI	CAYNNNNRTG	2 cut(s)	443, 460
SsiI	CCGC	3 cut(s)	230, 242, 252
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	67, 312
TaaI	ACNGT	2 cut(s)	37, 176
TaqI	TCGA	3 cut(s)	57, 159, 297
TfiI	GAWTC	1 cut(s)	299
TscAI	CASTG	2 cut(s)	42, 181
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	142, 336
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	2 cut(s)	42, 181
Tth111I	GACNNNGTC	1 cut(s)	146
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.