Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Forward (+)

4995426 .. 4997785

Gene Structure 2360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTTGTTGGTGATTCTCTTAGTCTAAATCAATGGCAATCGTTGGCATGTATGCTTCATTCCTCTGTTCCAAATTCTACGTATACTTTAACCACACAAGGTAGTATATCAACCTACACATTCAAGGAGTATGGACTGGAATTGAAGCTTGATAGGAATGTTTATCTAGTAGATATAGTTAGGGAGAAGATTGGGAGAGTTTTGAAGCTTGATTCGATCAATGATGGAAAAAATTGGGTAGAGATGGATACATTGATTTTTAATACTTGGCATTGGTGGAGTCGGAGAGGTCCTGCACAACCATGGGATTTGATTCAAATAGGGACTAACGTTACAAAAGACATGGACCGTGTGGCCGCGTTTGAAATTGCGCTTGGGACTTGGGGGAAATGGGTCGATACCGTCTTAAATACTAAGAAAACTAGAGTCTTTTTTCAAGGAATTTCTCCATCTCATTACAAAGGAGTTCTGTGGGGCGAACCAGCGGCAAAGAGTTGCGTGGGACAGAAGGAACCACTTTTGGGGACAAAATATCCAGGAGGATTGCCAGCAGAAGTGGGAGTTTTGAAGAGAGCACTCGGGAAAATATCGAAACCGGTGACATTGCTAGACATTACGATGCTTTCGTTGCTTCGCAAAGATGCTCATCCTTCGGTTTACGGTCTAGGCGGGCGAAACTCCTCCGGTGACTGCAGCCACTGGTGTCTCTCTGGGGTACCGGATACTTGGAATGAGATTCTTTACAATTATATGGTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

253

Amino Acids

28.37

Weight (kDa)

8.58

Isoelectric Point (pI)

25.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	33 - 85	2.9e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	86 - 352	2.5e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	715
AccB1I	GGYRCC	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	83
AccII	CGCG	1 cut(s)	359
AciI	CCGC	3 cut(s)	357, 485, 669
AclI	AACGTT	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	73, 441
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgeI	ACCGGT	1 cut(s)	595
AgsI	TTSAA	7 cut(s)	124, 145, 205, 317, 365, 437, 568
AjnI	CCWGG	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	357, 389
AluBI	AGCT	2 cut(s)	148, 208
AluI	AGCT	2 cut(s)	148, 208
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	1 cut(s)	710
AlwNI	CAGNNNCTG	1 cut(s)	699
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	693
ApoI	RAATTY	2 cut(s)	73, 441
AsiGI	ACCGGT	1 cut(s)	595
Asp718I	GGTACC	1 cut(s)	715
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	2 cut(s)	290, 346
AsuHPI	GGTGA	3 cut(s)	23, 610, 698
AvaI	CYCGRG	1 cut(s)	578
AvaII	GGWCC	2 cut(s)	290, 346
BanI	GGYRCC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	3 cut(s)	218, 238, 457
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	2 cut(s)	241, 715
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	4 cut(s)	167, 423, 608, 665
BfmI	CTRYAG	1 cut(s)	691
BfuI	GTATCC	2 cut(s)	241, 715
BisI	GCNGC	3 cut(s)	357, 486, 694
BlsI	GCNGC	3 cut(s)	358, 487, 695
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	2 cut(s)	290, 346
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	290, 346
BmiI	GGNNCC	2 cut(s)	513, 717
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	609, 631
BsaAI	YACGTR	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	3 cut(s)	595, 683, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	2 cut(s)	141, 704
Bse3DI	GCAATG	1 cut(s)	602
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	646
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	602
BseNI	ACTGG	2 cut(s)	141, 704
BseRI	GAGGAG	1 cut(s)	670
BseXI	GCAGC	1 cut(s)	705
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	715
BshTI	ACCGGT	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	3 cut(s)	596, 684, 719
BslFI	GGGAC	4 cut(s)	337, 391, 516, 538
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	4 cut(s)	337, 391, 516, 538
BsnI	GGCC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	1 cut(s)	216
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	3 cut(s)	357, 485, 669
BspANI	GGCC	1 cut(s)	356
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	2 cut(s)	513, 717
BspMAI	CTGCAG	1 cut(s)	695
BspT107I	GGYRCC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	141, 704
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	216
BssNAI	GTATAC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	302
Bst1107I	GTATAC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	3 cut(s)	350, 403, 662
Bst6I	CTCTTC	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	549, 671
BstDEI	CTNAG	2 cut(s)	20, 414
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	691
BstSNI	TACGTA	1 cut(s)	81
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	705
BstZ17I	GTATAC	1 cut(s)	84
BsuI	GTATCC	2 cut(s)	241, 715
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	549, 671
CaiI	CAGNNNCTG	1 cut(s)	699
CfoI	GCGC	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	595
Cfr13I	GGNCC	2 cut(s)	290, 346
Csp6I	GTAC	1 cut(s)	716
CspAI	ACCGGT	1 cut(s)	595
CviAII	CATG	3 cut(s)	48, 303, 343
CviJI	RGCY	4 cut(s)	148, 208, 356, 696
CviKI_1	RGCY	4 cut(s)	148, 208, 356, 696
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	2 cut(s)	20, 414
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco105I	TACGTA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	290, 346
Eco88I	CYCGRG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	3 cut(s)	51, 306, 346
FaqI	GGGAC	4 cut(s)	337, 391, 516, 538
FatI	CATG	3 cut(s)	47, 302, 342
FauI	CCCGC	1 cut(s)	662
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	357, 486, 694
FokI	GGATG	1 cut(s)	633
Fsp4HI	GCNGC	3 cut(s)	357, 486, 694
FspBI	CTAG	4 cut(s)	167, 423, 608, 665
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	3 cut(s)	357, 486, 694
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	3 cut(s)	596, 684, 719
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	3 cut(s)	51, 306, 346
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HindIII	AAGCTT	2 cut(s)	146, 206
HinfI	GANTC	6 cut(s)	14, 212, 280, 313, 426, 736
HpaII	CCGG	3 cut(s)	596, 684, 719
HphI	GGTGA	3 cut(s)	23, 610, 698
Hpy166II	GTNNAC	2 cut(s)	84, 658
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	1 cut(s)	580
Hpy8I	GTNNAC	2 cut(s)	84, 658
HpyAV	CCTTC	2 cut(s)	502, 660
HpyCH4III	ACNGT	3 cut(s)	350, 403, 662
HpyCH4IV	ACGT	2 cut(s)	80, 330
HpyCH4V	TGCA	2 cut(s)	296, 693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	2 cut(s)	20, 414
HpySE526I	ACGT	2 cut(s)	80, 330
Hsp92II	CATG	3 cut(s)	51, 306, 346
HspAI	GCGC	1 cut(s)	371
KpnI	GGTACC	1 cut(s)	719
Kzo9I	GATC	1 cut(s)	216
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	2 cut(s)	609, 631
MaeI	CTAG	4 cut(s)	167, 423, 608, 665
MaeII	ACGT	2 cut(s)	80, 330
MaeIII	GTNAC	3 cut(s)	331, 598, 686
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	2 cut(s)	199, 580
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	6 cut(s)	73, 140, 232, 366, 441, 745
MlyI	GAGTC	2 cut(s)	289, 435
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	73, 281, 533, 691
MseI	TTAA	3 cut(s)	89, 261, 407
MslI	CAYNNNNRTG	2 cut(s)	301, 617
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	3 cut(s)	596, 684, 719
MspR9I	CCNGG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	628
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	3 cut(s)	51, 306, 346
NlaIV	GGNNCC	2 cut(s)	513, 717
NmuCI	GTSAC	2 cut(s)	598, 686
NspI	RCATGY	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	623
PfeI	GAWTC	4 cut(s)	14, 212, 313, 736
PfoI	TCCNGGA	1 cut(s)	535
PinAI	ACCGGT	1 cut(s)	595
PkrI	GCNGC	3 cut(s)	358, 487, 695
PleI	GAGTC	2 cut(s)	288, 434
PpsI	GAGTC	2 cut(s)	288, 434
Ppu21I	YACGTR	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	290
Psp1406I	AACGTT	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	2 cut(s)	513, 717
PspPI	GGNCC	2 cut(s)	290, 346
PspPPI	RGGWCCY	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	695
PstNI	CAGNNNCTG	1 cut(s)	699
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
RseI	CAYNNNNRTG	2 cut(s)	301, 617
SaqAI	TTAA	3 cut(s)	89, 261, 407
SatI	GCNGC	3 cut(s)	357, 486, 694
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	2 cut(s)	290, 346
SchI	GAGTC	2 cut(s)	289, 435
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	7 cut(s)	83, 103, 116, 150, 210, 292, 333
SfaNI	GCATC	2 cut(s)	609, 631
SfcI	CTRYAG	1 cut(s)	691
SinI	GGWCC	2 cut(s)	290, 346
SmiMI	CAYNNNNRTG	2 cut(s)	301, 617
SnaBI	TACGTA	1 cut(s)	81
Sse9I	AATT	6 cut(s)	73, 140, 232, 366, 441, 745
SsiI	CCGC	3 cut(s)	357, 485, 669
SspMI	CTAG	4 cut(s)	167, 423, 608, 665
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	3 cut(s)	350, 403, 662
TaiI	ACGT	2 cut(s)	83, 333
TaqI	TCGA	3 cut(s)	215, 396, 590
TasI	AATT	6 cut(s)	73, 140, 232, 366, 441, 745
TauI	GCSGC	2 cut(s)	359, 488
TfiI	GAWTC	4 cut(s)	14, 212, 313, 736
Tru1I	TTAA	3 cut(s)	89, 261, 407
Tru9I	TTAA	3 cut(s)	89, 261, 407
TscAI	CASTG	1 cut(s)	704
TseFI	GTSAC	2 cut(s)	598, 686
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	2 cut(s)	598, 686
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	290, 346
XapI	RAATTY	2 cut(s)	73, 441
XceI	RCATGY	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	4 cut(s)	167, 423, 608, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.