Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

23374262 .. 23445710

Gene Structure 71449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG206400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGTTCCTGGGTTCGTACCAGTCTTAGCTTCACTGCCATAGCGCTCCTCCATCTTCTTGTTCTTGTTTCTGGTCGGAAAGCAAATGGTGCAAGAAGACGCAGTGAGACGAGTGGTACCTGTGATTTCTTCAATGGGAGATGGGTCTTGGACGAGGCGTACCCGCTCTACCATCCCAGCACGTGTCCGTTCATCGAGCGGGAGTTCAGTTGCGAGAAGAATGGCCGAGCTGACCAGGACTACACCAAATACAGATGGCAACCCCATGACTGTAACTTACAGAGATTTGACGGCAAAGCATTTTTAGAAAAATTTAGAGGGAAAACCTTCATGTTTGTTGGAGATTCATTGAGCCGGAATCAATGGCAATCGTTGACGTGCTTTCTTCATTCAGCTGTGCCAACAGCTAAATACAATGTCACTAGAGAGGAAGATGTTTCTAATTTCGAGTTTACGGATTATGAAGTCAAAGTGATGCTAGACCGCAGTGTGTATCTAGTAGATACTGTTAGAGAAGACATTGGTAGGGTTTTGAAGCTTGATTCAATTGAGGGAGGCAAGTTGTGGAAGGGAATCGACACCCTCATCTTCAACACATGGCACTGGTGGAATCGCAGAGGACCTTCGCAACCATGGGATTTCATTGAAGTTGGAGGCAAGATTATGAAAGACATGGATCGGATGCTTGCTTTTGAGAAGGCACTCACAACTTGGGGTCAATGGGTGGATACAAACGTTGATCCTGCAAAAACTAAAGTTTTCTTCCAAGGGATTTCACCCTCCCATTACAATGGGACTGATTGGGGTGAGCCAAAAGCAAGGACTTGTGAGGGGCAGAAGGAGCCTTTGTTGGGGTCGACCTACCCAGGAGGGTTGCCACCAGCTCTGGGTGTGCTGAAGAATTCTTTAAGCAAAATCACAAAGCCTGTGACATTGCTGGACATAACAAACCTCTCCCTCCTTCGTAAAGATGGCCACCCTTCAATTTATGGGTTGGGAGGCGGCACAGGGATGGATTGCAGTCATTGGTGTCTTTGCGGAGTCCCAGATACTTGGAACGAGATTCTTTACAATTTTCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

361

Amino Acids

41.14

Weight (kDa)

7.56

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	40 - 92	5.7e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	93 - 358	1.7e-90	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	116
AccB1I	GGYRCC	1 cut(s)	116
AccBSI	CCGCTC	2 cut(s)	166, 199
AccI	GTMKAC	1 cut(s)	857
AciI	CCGC	5 cut(s)	164, 199, 484, 1002, 1038
AclI	AACGTT	1 cut(s)	735
AclWI	GGATC	2 cut(s)	684, 734
AcoI	YGGCCR	2 cut(s)	223, 973
AcsI	RAATTY	2 cut(s)	311, 901
AcuI	CTGAAG	1 cut(s)	917
AcvI	CACGTG	1 cut(s)	183
AfaI	GTAC	3 cut(s)	19, 118, 161
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	851, 887
AflIII	ACRYGT	1 cut(s)	182
AgsI	TTSAA	6 cut(s)	133, 535, 546, 592, 647, 984
AjiI	CACGTC	1 cut(s)	378
AjnI	CCWGG	3 cut(s)	8, 234, 865
AluBI	AGCT	6 cut(s)	30, 230, 395, 407, 538, 884
AluI	AGCT	6 cut(s)	30, 230, 395, 407, 538, 884
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	684, 734
Aor51HI	AGCGCT	1 cut(s)	45
AoxI	GGCC	2 cut(s)	223, 973
ApoI	RAATTY	2 cut(s)	311, 901
Asp700I	GAANNNNTTC	1 cut(s)	326
Asp718I	GGTACC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	2 cut(s)	768, 818
AvaII	GGWCC	1 cut(s)	620
BaeI	ACNNNNGTAYC	2 cut(s)	720, 753
BalI	TGGCCA	1 cut(s)	975
BanI	GGYRCC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	103, 522
BccI	CCATC	6 cut(s)	60, 135, 180, 249, 965, 1006
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	3 cut(s)	10, 236, 867
BciVI	GTATCC	1 cut(s)	721
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	3 cut(s)	423, 479, 497
BfoI	RGCGCY	1 cut(s)	47
BfuI	GTATCC	1 cut(s)	721
BisI	GCNGC	1 cut(s)	1003
BlsI	GCNGC	1 cut(s)	1004
Bme1390I	CCNGG	3 cut(s)	10, 236, 867
Bme18I	GGWCC	1 cut(s)	620
BmgBI	CACGTC	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	3 cut(s)	7, 118, 843
BmrFI	CCNGG	3 cut(s)	10, 236, 867
BmsI	GCATC	2 cut(s)	465, 672
BpiI	GAAGAC	2 cut(s)	103, 522
BsaAI	YACGTR	1 cut(s)	183
BsaJI	CCNNGG	4 cut(s)	9, 632, 766, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	833, 863
Bsc4I	CCNNNNNNNGG	2 cut(s)	851, 887
Bse1I	ACTGG	2 cut(s)	21, 608
Bse3DI	GCAATG	1 cut(s)	932
BseBI	CCWGG	3 cut(s)	10, 236, 867
BseDI	CCNNGG	4 cut(s)	9, 632, 766, 865
BseGI	GGATG	3 cut(s)	172, 687, 1017
BseLI	CCNNNNNNNGG	2 cut(s)	851, 887
BseMI	GCAATG	1 cut(s)	932
BseNI	ACTGG	2 cut(s)	21, 608
BseRI	GAGGAG	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	2 cut(s)	225, 975
BshNI	GGYRCC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	2 cut(s)	808, 1028
BslI	CCNNNNNNNGG	2 cut(s)	851, 887
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	808, 1028
BsnI	GGCC	2 cut(s)	225, 975
Bsp143I	GATC	2 cut(s)	676, 739
Bsp19I	CCATGG	1 cut(s)	632
BspACI	CCGC	5 cut(s)	164, 199, 484, 1002, 1038
BspANI	GGCC	2 cut(s)	225, 975
BspLI	GGNNCC	3 cut(s)	7, 118, 843
BspPI	GGATC	2 cut(s)	684, 734
BspT107I	GGYRCC	1 cut(s)	116
BsrBI	CCGCTC	2 cut(s)	166, 199
BsrDI	GCAATG	1 cut(s)	932
BsrI	ACTGG	2 cut(s)	21, 608
BssECI	CCNNGG	4 cut(s)	9, 632, 766, 865
BssMI	GATC	2 cut(s)	676, 739
BssT1I	CCWWGG	2 cut(s)	632, 766
Bst2UI	CCWGG	3 cut(s)	10, 236, 867
Bst4CI	ACNGT	2 cut(s)	272, 508
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	632
BstF5I	GGATG	3 cut(s)	172, 687, 1017
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	679, 742
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	2 cut(s)	676, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 841
BstNI	CCWGG	3 cut(s)	10, 236, 867
BstSCI	CCNGG	3 cut(s)	8, 234, 865
BstV2I	GAAGAC	2 cut(s)	103, 522
BstXI	CCANNNNNNTGG	2 cut(s)	791, 1053
BsuI	GTATCC	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	225, 975
BtgI	CCRYGG	1 cut(s)	632
BtrI	CACGTC	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	172, 687, 1017
BtsI	GCAGTG	3 cut(s)	33, 109, 493
BtsIMutI	CAGTG	4 cut(s)	33, 109, 493, 601
Cac8I	GCNNGC	1 cut(s)	687
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	620
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	18, 117, 160
CviAII	CATG	5 cut(s)	266, 331, 597, 633, 673
CviQI	GTAC	3 cut(s)	18, 117, 160
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	2 cut(s)	678, 741
DpnII	GATC	2 cut(s)	676, 739
EaeI	YGGCCR	2 cut(s)	223, 973
Eco130I	CCWWGG	2 cut(s)	632, 766
Eco47I	GGWCC	1 cut(s)	620
Eco47III	AGCGCT	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	917
Eco72I	CACGTG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRI	GAATTC	1 cut(s)	901
EcoRII	CCWGG	3 cut(s)	8, 234, 865
EcoT14I	CCWWGG	2 cut(s)	632, 766
ErhI	CCWWGG	2 cut(s)	632, 766
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	5 cut(s)	269, 334, 600, 636, 676
FaqI	GGGAC	2 cut(s)	808, 1028
FatI	CATG	5 cut(s)	265, 330, 596, 632, 672
FauI	CCCGC	2 cut(s)	171, 192
FblI	GTMKAC	1 cut(s)	857
Fnu4HI	GCNGC	1 cut(s)	1003
FokI	GGATG	3 cut(s)	159, 694, 1024
Fsp4HI	GCNGC	1 cut(s)	1003
FspBI	CTAG	3 cut(s)	423, 479, 497
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	1003
GsaI	CCCAGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	225, 975
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	5 cut(s)	269, 334, 600, 636, 676
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	2 cut(s)	375, 858
HindII	GTYRAC	2 cut(s)	375, 858
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	7 cut(s)	344, 358, 542, 573, 610, 1041, 1063
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	2 cut(s)	768, 818
Hpy166II	GTNNAC	3 cut(s)	375, 453, 858
Hpy188I	TCNGA	2 cut(s)	78, 681
Hpy8I	GTNNAC	3 cut(s)	375, 453, 858
HpyAV	CCTTC	7 cut(s)	337, 562, 633, 691, 832, 971, 990
HpyCH4III	ACNGT	2 cut(s)	272, 508
HpyCH4IV	ACGT	3 cut(s)	182, 377, 735
HpyCH4V	TGCA	3 cut(s)	92, 746, 1020
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 841
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	3 cut(s)	182, 377, 735
Hsp92II	CATG	5 cut(s)	269, 334, 600, 636, 676
HspAI	GCGC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	676, 739
LmnI	GCTCC	2 cut(s)	51, 841
LweI	GCATC	2 cut(s)	465, 672
MaeI	CTAG	3 cut(s)	423, 479, 497
MaeII	ACGT	3 cut(s)	182, 377, 735
MaeIII	GTNAC	3 cut(s)	272, 418, 928
MalI	GATC	2 cut(s)	678, 741
MbiI	CCGCTC	2 cut(s)	166, 199
MboI	GATC	2 cut(s)	676, 739
MfeI	CAATTG	1 cut(s)	546
MlsI	TGGCCA	1 cut(s)	975
MluCI	AATT	6 cut(s)	311, 442, 546, 901, 984, 1072
MluNI	TGGCCA	1 cut(s)	975
MlyI	GAGTC	1 cut(s)	1050
MmeI	TCCRAC	3 cut(s)	56, 319, 631
Mox20I	TGGCCA	1 cut(s)	975
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	975
MseI	TTAA	1 cut(s)	908
MslI	CAYNNNNRTG	2 cut(s)	789, 1010
Msp20I	TGGCCA	1 cut(s)	975
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	3 cut(s)	10, 236, 867
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	3 cut(s)	10, 236, 867
MwoI	GCNNNNNNNGC	2 cut(s)	89, 841
NcoI	CCATGG	1 cut(s)	632
NdeII	GATC	2 cut(s)	676, 739
NlaIII	CATG	5 cut(s)	269, 334, 600, 636, 676
NlaIV	GGNNCC	3 cut(s)	7, 118, 843
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	2 cut(s)	418, 928
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	6 cut(s)	344, 358, 542, 573, 610, 1063
PkrI	GCNGC	1 cut(s)	1004
PleI	GAGTC	1 cut(s)	1049
PmaCI	CACGTG	1 cut(s)	183
PmlI	CACGTG	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	1049
Ppu21I	YACGTR	1 cut(s)	183
PpuMI	RGGWCCY	1 cut(s)	620
Psp1406I	AACGTT	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	3 cut(s)	8, 234, 865
PspCI	CACGTG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	3 cut(s)	8, 234, 865
PspN4I	GGNNCC	3 cut(s)	7, 118, 843
PspPI	GGNCC	1 cut(s)	620
PspPPI	RGGWCCY	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	19, 118, 161
RsaNI	GTAC	3 cut(s)	18, 117, 160
RseI	CAYNNNNRTG	2 cut(s)	789, 1010
SalI	GTCGAC	1 cut(s)	856
SaqAI	TTAA	1 cut(s)	908
SatI	GCNGC	1 cut(s)	1003
Sau3AI	GATC	2 cut(s)	676, 739
Sau96I	GGNCC	1 cut(s)	620
SchI	GAGTC	1 cut(s)	1050
ScrFI	CCNGG	3 cut(s)	10, 236, 867
SfaNI	GCATC	2 cut(s)	465, 672
SinI	GGWCC	1 cut(s)	620
SmiMI	CAYNNNNRTG	2 cut(s)	789, 1010
Sse9I	AATT	6 cut(s)	311, 442, 546, 901, 984, 1072
SsiI	CCGC	5 cut(s)	164, 199, 484, 1002, 1038
SspMI	CTAG	3 cut(s)	423, 479, 497
StyD4I	CCNGG	3 cut(s)	8, 234, 865
StyI	CCWWGG	2 cut(s)	632, 766
TaaI	ACNGT	2 cut(s)	272, 508
TaiI	ACGT	3 cut(s)	185, 380, 738
TaqI	TCGA	4 cut(s)	195, 447, 576, 857
TasI	AATT	6 cut(s)	311, 442, 546, 901, 984, 1072
TauI	GCSGC	1 cut(s)	1005
TfiI	GAWTC	6 cut(s)	344, 358, 542, 573, 610, 1063
Tru1I	TTAA	1 cut(s)	908
Tru9I	TTAA	1 cut(s)	908
TscAI	CASTG	4 cut(s)	40, 109, 493, 608
TseFI	GTSAC	2 cut(s)	418, 928
Tsp45I	GTSAC	2 cut(s)	418, 928
TspDTI	ATGAA	7 cut(s)	181, 319, 336, 377, 477, 631, 680
TspGWI	ACGGA	2 cut(s)	177, 470
TspRI	CASTG	4 cut(s)	40, 109, 493, 608
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	2 cut(s)	311, 901
XmiI	GTMKAC	1 cut(s)	857
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	3 cut(s)	423, 479, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.