Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Forward (+)

70903526 .. 70906343

Gene Structure 2818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGAAAGGTGCTCCATGGCTTCGGCTTATTTGCTTGCATTGCTGTTCTCCTAGCATTGTGCCTTCTTCTACTTCTTCATGATGGCCGGTATTGCTGTGGAAGAGTGCAGAAGAAGCAGGTAAATGAGTCGCAGTCAATAGGCGGAAGCTGTAACTTGTTTGAAGGGAGTTGGGTTTATGATGATACGTATCCGCTCTACGACACTTTTTCCAGCTGTCCTTTTGTTGAGAAAGAGTTTGACTGTCGGAAAAATGGAAGGCCGGACAGTCAGTATCTCAAACTTAGATGGAAGCCAGACACTTGTGCATTGCCAAGATTCAATGGTATGGACATGTTGAGGAGGCTGAAAGGGAAGAAGATACTATTCGTAGGGGACTCTCTAATCCTCAACCAATGGCAGTCACTAACATGCATGCTGCATTCTGCAGTGCCCAAAACAAACTACACTTTAACTAGGAAAGGAGACCTCTCTACGTTTTCATTACCTGAATTTGAAGTTTCTGTTATGATGTCTCGCAATGCATTTCTGGTGGATCTAGTGAAAACAAGGACAGGCGGCAGCATGGTTCTAAAGCTTGACTCCATTGAAAACGGAAATGCATGGAAAGGATACGACATGCTTATCTTCAATACTTGGCATTGGTGGCAACATAAAGGAAGCAGACAACCATGGGACTACATTGTCTCAGGAGGTAAGATACTCCAGGATATGGATCGCTTGGCAGCTTTTAGGGAAGGATTAACTACTTGGTCCAAATGGGTGGACTCTAATGTTGATGCTAAAACTACCAAAGTTTTCTTTCAAGGCATTTCTCCATCACATTACGATGGAAAAGAATGGAACGGCACTGATTCGGCAACTTGCAGTGGACAAACTCAACCTATAAGTGGTTCAACTTACCCCGGAGGTTCACCACCAGCAACAACTGTGGTCAACCATGTGTTGGCCAAAATGTCGTCTCCAGCAACTTTGCTGGACATAACTTTACTGTCGCAGTTGAGAAAAGACGGGCACCCATCTGTATATGGTTTCGGTGGGAAAACGGGAAATGATTGTAGTCACTGGTGCCTTAGTGGTGTCCCTGATACCTGGAATGAACTATTATATGCAACTCTTGTGACTACCGACCAAAGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

380

Amino Acids

42.53

Weight (kDa)

8.51

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	50 - 102	2.2e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	104 - 371	6.3e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
Acc36I	ACCTGC	1 cut(s)	109
AccB1I	GGYRCC	2 cut(s)	1014, 1068
AccB7I	CCANNNNNTGG	2 cut(s)	712, 946
AccBSI	CCGCTC	1 cut(s)	196
AciI	CCGC	3 cut(s)	144, 194, 558
AclWI	GGATC	2 cut(s)	543, 723
AcoI	YGGCCR	2 cut(s)	85, 948
AcsI	RAATTY	1 cut(s)	491
AfiI	CCNNNNNNNGG	4 cut(s)	712, 890, 946, 1134
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	7 cut(s)	164, 322, 497, 590, 631, 806, 897
AjnI	CCWGG	2 cut(s)	705, 1091
AluBI	AGCT	5 cut(s)	150, 216, 577, 728, 1140
AluI	AGCT	5 cut(s)	150, 216, 577, 728, 1140
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	4 cut(s)	459, 519, 691, 966
AlwI	GGATC	2 cut(s)	543, 723
AoxI	GGCC	3 cut(s)	85, 260, 948
ApeKI	GCWGC	3 cut(s)	418, 561, 725
ApoI	RAATTY	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	753
AsuC2I	CCSGG	1 cut(s)	906
AsuHPI	GGTGA	1 cut(s)	906
AvaII	GGWCC	1 cut(s)	753
BaeGI	GKGCMC	2 cut(s)	435, 1017
BalI	TGGCCA	1 cut(s)	950
BanI	GGYRCC	2 cut(s)	1014, 1068
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	405, 573, 737
BccI	CCATC	5 cut(s)	77, 282, 824, 826, 1027
BceAI	ACGGC	1 cut(s)	862
BciT130I	CCWGG	2 cut(s)	707, 1093
BciVI	GTATCC	2 cut(s)	201, 605
BcnI	CCSGG	1 cut(s)	906
BcoDI	GTCTC	4 cut(s)	459, 519, 691, 966
BfaI	CTAG	4 cut(s)	53, 456, 539, 1141
BfmI	CTRYAG	1 cut(s)	426
BfuAI	ACCTGC	1 cut(s)	109
BfuI	GTATCC	2 cut(s)	201, 605
BisI	GCNGC	4 cut(s)	419, 559, 562, 726
BlsI	GCNGC	4 cut(s)	420, 560, 563, 727
Bme1390I	CCNGG	3 cut(s)	707, 906, 1093
Bme18I	GGWCC	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	753
BmiI	GGNNCC	2 cut(s)	1016, 1070
BmrFI	CCNGG	3 cut(s)	707, 906, 1093
BmsI	GCATC	1 cut(s)	769
BpmI	CTGGAG	2 cut(s)	689, 948
BpuMI	CCSGG	1 cut(s)	906
BsaAI	YACGTR	1 cut(s)	189
BsaBI	GATNNNNATC	2 cut(s)	189, 714
BsaI	GGTCTC	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	16, 671, 904
Bsc4I	CCNNNNNNNGG	4 cut(s)	712, 890, 946, 1134
Bse118I	RCCGGY	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	1070
Bse3DI	GCAATG	3 cut(s)	39, 308, 526
Bse8I	GATNNNNATC	2 cut(s)	189, 714
BseBI	CCWGG	2 cut(s)	707, 1093
BseDI	CCNNGG	3 cut(s)	16, 671, 904
BseJI	GATNNNNATC	2 cut(s)	189, 714
BseLI	CCNNNNNNNGG	4 cut(s)	712, 890, 946, 1134
BseMI	GCAATG	3 cut(s)	39, 308, 526
BseMII	CTCAG	1 cut(s)	702
BseNI	ACTGG	1 cut(s)	1070
BseRI	GAGGAG	1 cut(s)	355
BseSI	GKGCMC	2 cut(s)	435, 1017
BseXI	GCAGC	3 cut(s)	405, 573, 737
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	87, 262, 950
BshNI	GGYRCC	2 cut(s)	1014, 1068
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	88, 263, 906
BslFI	GGGAC	3 cut(s)	389, 689, 1067
BslI	CCNNNNNNNGG	4 cut(s)	712, 890, 946, 1134
BsmAI	GTCTC	4 cut(s)	459, 519, 691, 966
BsmBI	CGTCTC	1 cut(s)	966
BsmFI	GGGAC	3 cut(s)	389, 689, 1067
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	3 cut(s)	87, 262, 950
Bso31I	GGTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	3 cut(s)	15, 435, 1017
Bsp143I	GATC	2 cut(s)	535, 715
Bsp19I	CCATGG	2 cut(s)	16, 671
BspACI	CCGC	3 cut(s)	144, 194, 558
BspANI	GGCC	3 cut(s)	87, 262, 950
BspCNI	CTCAG	1 cut(s)	701
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	1016, 1070
BspMAI	CTGCAG	1 cut(s)	430
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	2 cut(s)	543, 723
BspT107I	GGYRCC	2 cut(s)	1014, 1068
BspTNI	GGTCTC	1 cut(s)	459
BsrBI	CCGCTC	1 cut(s)	196
BsrDI	GCAATG	3 cut(s)	39, 308, 526
BsrFI	RCCGGY	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	1070
BssAI	RCCGGY	1 cut(s)	87
BssECI	CCNNGG	3 cut(s)	16, 671, 904
BssMI	GATC	2 cut(s)	535, 715
BssT1I	CCWWGG	2 cut(s)	16, 671
Bst2UI	CCWGG	2 cut(s)	707, 1093
Bst4CI	ACNGT	4 cut(s)	245, 269, 931, 993
Bst6I	CTCTTC	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	37, 416
BstDEI	CTNAG	3 cut(s)	284, 688, 1073
BstDSI	CCRYGG	2 cut(s)	16, 671
BstKTI	GATC	2 cut(s)	538, 718
BstMAI	GTCTC	4 cut(s)	459, 519, 691, 966
BstMBI	GATC	2 cut(s)	535, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 93, 115, 646
BstNI	CCWGG	2 cut(s)	707, 1093
BstNSI	RCATGY	4 cut(s)	337, 414, 418, 622
BstSCI	CCNGG	3 cut(s)	705, 904, 1091
BstSFI	CTRYAG	1 cut(s)	426
BstSLI	GKGCMC	2 cut(s)	435, 1017
BstSNI	TACGTA	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	405, 573, 737
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	535
BsuI	GTATCC	2 cut(s)	201, 605
BsuRI	GGCC	3 cut(s)	87, 262, 950
BtgI	CCRYGG	2 cut(s)	16, 671
BtsI	GCAGTG	2 cut(s)	435, 874
BtsIMutI	CAGTG	4 cut(s)	435, 849, 874, 1063
BveI	ACCTGC	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	37, 416
CciI	TCATGA	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	753
CspCI	CAANNNNNGTGG	2 cut(s)	912, 947
DdeI	CTNAG	3 cut(s)	284, 688, 1073
DpnI	GATC	2 cut(s)	537, 717
DpnII	GATC	2 cut(s)	535, 715
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
EaeI	YGGCCR	2 cut(s)	85, 948
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	159
Eco105I	TACGTA	1 cut(s)	189
Eco130I	CCWWGG	2 cut(s)	16, 671
Eco31I	GGTCTC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	753
EcoRII	CCWGG	2 cut(s)	705, 1091
EcoT14I	CCWWGG	2 cut(s)	16, 671
EcoT22I	ATGCAT	3 cut(s)	416, 526, 604
ErhI	CCWWGG	2 cut(s)	16, 671
Esp3I	CGTCTC	1 cut(s)	966
FaqI	GGGAC	3 cut(s)	389, 689, 1067
Fnu4HI	GCNGC	4 cut(s)	419, 559, 562, 726
Fsp4HI	GCNGC	4 cut(s)	419, 559, 562, 726
FspBI	CTAG	4 cut(s)	53, 456, 539, 1141
GluI	GCNGC	4 cut(s)	419, 559, 562, 726
GsuI	CTGGAG	2 cut(s)	689, 948
HaeIII	GGCC	3 cut(s)	87, 262, 950
HapII	CCGG	3 cut(s)	88, 263, 906
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	6 cut(s)	128, 318, 377, 581, 767, 854
HpaII	CCGG	3 cut(s)	88, 263, 906
HphI	GGTGA	1 cut(s)	906
Hpy166II	GTNNAC	4 cut(s)	766, 872, 914, 937
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	2 cut(s)	80, 690
Hpy8I	GTNNAC	4 cut(s)	766, 872, 914, 937
HpyAV	CCTTC	4 cut(s)	74, 158, 252, 731
HpyCH4III	ACNGT	4 cut(s)	245, 269, 931, 993
HpyCH4IV	ACGT	2 cut(s)	188, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 93, 115, 646
HpyF3I	CTNAG	3 cut(s)	284, 688, 1073
HpySE526I	ACGT	2 cut(s)	188, 476
Kzo9I	GATC	2 cut(s)	535, 715
LmnI	GCTCC	2 cut(s)	18, 1137
Lsp1109I	GCAGC	3 cut(s)	405, 573, 737
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	4 cut(s)	53, 456, 539, 1141
MaeII	ACGT	2 cut(s)	188, 476
MaeIII	GTNAC	4 cut(s)	152, 402, 1061, 1120
MalI	GATC	2 cut(s)	537, 717
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	2 cut(s)	535, 715
MboII	GAAGA	7 cut(s)	59, 68, 114, 124, 367, 370, 619
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	3 cut(s)	15, 435, 1017
MlsI	TGGCCA	1 cut(s)	950
MluCI	AATT	1 cut(s)	491
MluNI	TGGCCA	1 cut(s)	950
MlyI	GAGTC	4 cut(s)	137, 371, 575, 761
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	6 cut(s)	333, 336, 398, 479, 686, 902
Mox20I	TGGCCA	1 cut(s)	950
Mph1103I	ATGCAT	3 cut(s)	416, 526, 604
MscI	TGGCCA	1 cut(s)	950
MseI	TTAA	2 cut(s)	452, 743
MslI	CAYNNNNRTG	2 cut(s)	409, 828
Msp20I	TGGCCA	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	3 cut(s)	88, 263, 906
MspR9I	CCNGG	3 cut(s)	707, 906, 1093
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	707, 1093
MwoI	GCNNNNNNNGC	4 cut(s)	41, 93, 115, 646
NciI	CCSGG	1 cut(s)	906
NcoI	CCATGG	2 cut(s)	16, 671
NdeII	GATC	2 cut(s)	535, 715
NlaIV	GGNNCC	2 cut(s)	1016, 1070
NmuCI	GTSAC	3 cut(s)	402, 1061, 1120
NsiI	ATGCAT	3 cut(s)	416, 526, 604
NspI	RCATGY	4 cut(s)	337, 414, 418, 622
PaeI	GCATGC	1 cut(s)	418
PagI	TCATGA	1 cut(s)	79
PciI	ACATGT	1 cut(s)	333
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	2 cut(s)	318, 854
PflMI	CCANNNNNTGG	2 cut(s)	712, 946
PfoI	TCCNGGA	1 cut(s)	705
PkrI	GCNGC	4 cut(s)	420, 560, 563, 727
PleI	GAGTC	4 cut(s)	136, 371, 575, 761
PpsI	GAGTC	4 cut(s)	136, 371, 575, 761
Ppu21I	YACGTR	1 cut(s)	189
PscI	ACATGT	1 cut(s)	333
Psp6I	CCWGG	2 cut(s)	705, 1091
PspGI	CCWGG	2 cut(s)	705, 1091
PspN4I	GGNNCC	2 cut(s)	1016, 1070
PspPI	GGNCC	1 cut(s)	753
PstI	CTGCAG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	216
RseI	CAYNNNNRTG	2 cut(s)	409, 828
SaqAI	TTAA	2 cut(s)	452, 743
SatI	GCNGC	4 cut(s)	419, 559, 562, 726
Sau3AI	GATC	2 cut(s)	535, 715
Sau96I	GGNCC	1 cut(s)	753
SchI	GAGTC	4 cut(s)	137, 371, 575, 761
ScrFI	CCNGG	3 cut(s)	707, 906, 1093
SduI	GDGCHC	3 cut(s)	15, 435, 1017
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	753
SmiMI	CAYNNNNRTG	2 cut(s)	409, 828
SnaBI	TACGTA	1 cut(s)	189
SphI	GCATGC	1 cut(s)	418
Sse9I	AATT	1 cut(s)	491
SsiI	CCGC	3 cut(s)	144, 194, 558
SspMI	CTAG	4 cut(s)	53, 456, 539, 1141
StyD4I	CCNGG	3 cut(s)	705, 904, 1091
StyI	CCWWGG	2 cut(s)	16, 671
TaaI	ACNGT	4 cut(s)	245, 269, 931, 993
TaiI	ACGT	2 cut(s)	191, 479
TasI	AATT	1 cut(s)	491
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	318, 854
Tru1I	TTAA	2 cut(s)	452, 743
Tru9I	TTAA	2 cut(s)	452, 743
TscAI	CASTG	4 cut(s)	435, 856, 874, 1070
TseFI	GTSAC	3 cut(s)	402, 1061, 1120
TseI	GCWGC	3 cut(s)	418, 561, 725
Tsp45I	GTSAC	3 cut(s)	402, 1061, 1120
TspDTI	ATGAA	3 cut(s)	68, 471, 1113
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	4 cut(s)	435, 856, 874, 1070
Van91I	CCANNNNNTGG	2 cut(s)	712, 946
VpaK11BI	GGWCC	1 cut(s)	753
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	4 cut(s)	337, 414, 418, 622
XspI	CTAG	4 cut(s)	53, 456, 539, 1141
Zsp2I	ATGCAT	3 cut(s)	416, 526, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.