Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

11322891 .. 11327668

Gene Structure 4778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGTTCCTGGGTTCATACCAGTCTTAGCTTCACTGCCATAGCTCTTCTCCATCTTCTAGTTCTTGTTTCTGGTCGTAAACCAACTGGTGCAAGAAGAAGCAGAAGCAGTGAGACCAGTACTGGTACCTGTGATTTCTTCAATGGGAGATGGGTTTTGGACGAGGAGGAGTACCCACTCTACCATCCTAGCACGTGTCCGTTCATCGAGCGCGAGTTCAGTTGCGAGAAGAATGGCCGAGCTGACCAGGACTACACCAAATACAGATGGCAACCCCATGACTGTAATCTACATAGATTTGATGGCAAAGCATTTTTAGAAAAAAATAGAGGGAAGAGCTTCATGTTTGTTGGAGATTCATTGAGCCGGAATCAATGGCAGTCGTTGACGTGCTTGCTTCACTCAGCTGTGCCAACAGCTGAATACAATGTCACTAGACTAGGAGATGTTTCTAATTTCGAGTTTCCGGATTATGGAGTCAAAGTGATGCTTGACCGCAATGTGTATCTAGTAGATACTGTTAGAGAACAAATTGGTAGGGTTTTGAAGCTTGAATCAATTGAGGGAGGCAAGTTGTGGAAAGGAATCAACACCCTCATCTTCAACACTTGGCACTGGTGGAATCGCAGAGGACCTTCGCAGCCATGGGATTTCATTGAAGTTGGAGGCAAGATTATCAAAGATATGGATCGGATGCTTGCTTTTGAGAAGGCACTCACAACTTGGGGTCAATGGGTGGATACAAACGTTGATCCTGCAAAAACTAGGGTTTTCTTCCAAGGGATTTCACCCTCCCATTACAATGGGACTGATTGGGGTGAGCCAAGAGCAAGGACTTGCGAGGGGCAGAAGGAACCTTTGTTGGGGTCGACCTACCCAGGAGGGTTGCCACCAGCTGTAGGTGTGCTGAAGACTGCTTTACGCAAAATCACAAAGCCTGTGACATTGCTGGACATAACGAATCTCTCACTTCTTCGTAAAGATGGTCACCCTTCTATATATGGGTTGGGAGGCCGCCCAGGAATGGATTGTAGTCATTGGTGTCTTTGTGGAGTCCCGGATACTTGGAACGAGATTCTTTACAATTTTCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

366

Amino Acids

41.57

Weight (kDa)

8.3

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	43 - 96	3.3e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	97 - 362	1.1e-87	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	869
AccII	CGCG	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	2 cut(s)	496, 1015
AclI	AACGTT	1 cut(s)	747
AclWI	GGATC	2 cut(s)	696, 746
AcoI	YGGCCR	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	929
AcvI	CACGTG	1 cut(s)	195
AfaI	GTAC	3 cut(s)	121, 127, 173
AfiI	CCNNNNNNNGG	4 cut(s)	473, 863, 899, 1024
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	142, 547, 554, 604, 659
AjiI	CACGTC	1 cut(s)	390
AjnI	CCWGG	4 cut(s)	8, 246, 877, 1018
AluBI	AGCT	8 cut(s)	30, 44, 242, 339, 407, 419, 550, 896
AluI	AGCT	8 cut(s)	30, 44, 242, 339, 407, 419, 550, 896
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	2 cut(s)	696, 746
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	2 cut(s)	235, 1012
ApeKI	GCWGC	1 cut(s)	640
Asp700I	GAANNNNTTC	1 cut(s)	338
Asp718I	GGTACC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	632
AsuC2I	CCSGG	1 cut(s)	1058
AsuHPI	GGTGA	3 cut(s)	780, 830, 980
AvaII	GGWCC	1 cut(s)	632
BaeI	ACNNNNGTAYC	2 cut(s)	732, 765
BanI	GGYRCC	1 cut(s)	125
BbrPI	CACGTG	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	917
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	6 cut(s)	60, 144, 192, 261, 296, 977
BciT130I	CCWGG	4 cut(s)	10, 248, 879, 1020
BciVI	GTATCC	2 cut(s)	733, 1054
BcnI	CCSGG	1 cut(s)	1058
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	6 cut(s)	59, 189, 435, 440, 509, 765
BfmI	CTRYAG	1 cut(s)	897
BfuI	GTATCC	2 cut(s)	733, 1054
BisI	GCNGC	2 cut(s)	641, 1015
BlsI	GCNGC	2 cut(s)	642, 1016
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	5 cut(s)	10, 248, 879, 1020, 1058
Bme18I	GGWCC	1 cut(s)	632
BmgBI	CACGTC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	3 cut(s)	7, 127, 855
BmrFI	CCNGG	5 cut(s)	10, 248, 879, 1020, 1058
BmsI	GCATC	2 cut(s)	477, 684
BpiI	GAAGAC	1 cut(s)	917
BpuMI	CCSGG	1 cut(s)	1058
BsaAI	YACGTR	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	687
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	5 cut(s)	9, 644, 778, 877, 1018
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	4 cut(s)	473, 863, 899, 1024
Bse1I	ACTGG	5 cut(s)	21, 91, 117, 127, 620
Bse3DI	GCAATG	2 cut(s)	505, 944
Bse8I	GATNNNNATC	1 cut(s)	687
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	4 cut(s)	10, 248, 879, 1020
BseDI	CCNNGG	5 cut(s)	9, 644, 778, 877, 1018
BseGI	GGATG	2 cut(s)	184, 699
BseJI	GATNNNNATC	1 cut(s)	687
BseLI	CCNNNNNNNGG	4 cut(s)	473, 863, 899, 1024
BseMI	GCAATG	2 cut(s)	505, 944
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	5 cut(s)	21, 91, 117, 127, 620
BseRI	GAGGAG	2 cut(s)	179, 182
BseXI	GCAGC	1 cut(s)	652
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	237, 1014
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	367, 467, 1058
BslFI	GGGAC	2 cut(s)	820, 1040
BslI	CCNNNNNNNGG	4 cut(s)	473, 863, 899, 1024
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	820, 1040
BsnI	GGCC	2 cut(s)	237, 1014
Bso31I	GGTCTC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	688, 751
Bsp19I	CCATGG	1 cut(s)	644
BspACI	CCGC	2 cut(s)	496, 1015
BspANI	GGCC	2 cut(s)	237, 1014
BspCNI	CTCAG	1 cut(s)	416
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	7, 127, 855
BspPI	GGATC	2 cut(s)	696, 746
BspQI	GCTCTTC	2 cut(s)	51, 329
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	505, 944
BsrI	ACTGG	5 cut(s)	21, 91, 117, 127, 620
BssECI	CCNNGG	5 cut(s)	9, 644, 778, 877, 1018
BssMI	GATC	2 cut(s)	688, 751
BssT1I	CCWWGG	2 cut(s)	644, 778
Bst2UI	CCWGG	4 cut(s)	10, 248, 879, 1020
Bst4CI	ACNGT	2 cut(s)	284, 520
Bst6I	CTCTTC	2 cut(s)	51, 329
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	395, 699
BstDEI	CTNAG	2 cut(s)	26, 403
BstDSI	CCRYGG	1 cut(s)	644
BstEII	GGTNACC	1 cut(s)	986
BstF5I	GGATG	2 cut(s)	184, 699
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	691, 754
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	688, 751
BstNI	CCWGG	4 cut(s)	10, 248, 879, 1020
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	5 cut(s)	8, 246, 877, 1018, 1056
BstSFI	CTRYAG	1 cut(s)	897
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	917
BstXI	CCANNNNNNTGG	1 cut(s)	803
BsuI	GTATCC	2 cut(s)	733, 1054
BsuRI	GGCC	2 cut(s)	237, 1014
BtgI	CCRYGG	1 cut(s)	644
BtrI	CACGTC	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	184, 699
BtsI	GCAGTG	2 cut(s)	33, 115
BtsIMutI	CAGTG	3 cut(s)	33, 115, 613
Cac8I	GCNNGC	2 cut(s)	395, 699
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	632
Csp6I	GTAC	3 cut(s)	120, 126, 172
CviAII	CATG	3 cut(s)	278, 343, 645
CviQI	GTAC	3 cut(s)	120, 126, 172
DdeI	CTNAG	2 cut(s)	26, 403
DpnI	GATC	2 cut(s)	690, 753
DpnII	GATC	2 cut(s)	688, 751
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	51, 329
EarI	CTCTTC	2 cut(s)	51, 329
Eco130I	CCWWGG	2 cut(s)	644, 778
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	929
Eco72I	CACGTG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	986
EcoO109I	RGGNCCY	1 cut(s)	632
EcoO65I	GGTNACC	1 cut(s)	986
EcoRII	CCWGG	4 cut(s)	8, 246, 877, 1018
EcoT14I	CCWWGG	2 cut(s)	644, 778
ErhI	CCWWGG	2 cut(s)	644, 778
FaeI	CATG	3 cut(s)	281, 346, 648
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	2 cut(s)	820, 1040
FatI	CATG	3 cut(s)	277, 342, 644
FblI	GTMKAC	1 cut(s)	869
Fnu4HI	GCNGC	2 cut(s)	641, 1015
FokI	GGATG	2 cut(s)	171, 706
Fsp4HI	GCNGC	2 cut(s)	641, 1015
FspBI	CTAG	6 cut(s)	59, 189, 435, 440, 509, 765
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	641, 1015
HaeIII	GGCC	2 cut(s)	237, 1014
HapII	CCGG	3 cut(s)	367, 467, 1058
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	281, 346, 648
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HincII	GTYRAC	2 cut(s)	387, 870
HindII	GTYRAC	2 cut(s)	387, 870
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	9 cut(s)	356, 370, 477, 554, 585, 622, 961, 1053, 1075
HpaII	CCGG	3 cut(s)	367, 467, 1058
HphI	GGTGA	3 cut(s)	780, 830, 980
Hpy166II	GTNNAC	3 cut(s)	80, 387, 870
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	3 cut(s)	80, 387, 870
HpyAV	CCTTC	4 cut(s)	645, 703, 844, 1002
HpyCH4III	ACNGT	2 cut(s)	284, 520
HpyCH4IV	ACGT	3 cut(s)	194, 389, 747
HpyCH4V	TGCA	2 cut(s)	92, 758
HpyF3I	CTNAG	2 cut(s)	26, 403
HpySE526I	ACGT	3 cut(s)	194, 389, 747
Hsp92II	CATG	3 cut(s)	281, 346, 648
HspAI	GCGC	1 cut(s)	211
Kpn2I	TCCGGA	1 cut(s)	466
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	688, 751
LguI	GCTCTTC	2 cut(s)	51, 329
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	2 cut(s)	477, 684
MaeI	CTAG	6 cut(s)	59, 189, 435, 440, 509, 765
MaeII	ACGT	3 cut(s)	194, 389, 747
MaeIII	GTNAC	3 cut(s)	430, 940, 986
MalI	GATC	2 cut(s)	690, 753
MboI	GATC	2 cut(s)	688, 751
MfeI	CAATTG	1 cut(s)	558
MluCI	AATT	4 cut(s)	454, 531, 558, 1084
MlyI	GAGTC	2 cut(s)	486, 1062
MmeI	TCCRAC	2 cut(s)	331, 643
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	801
MspA1I	CMGCKG	3 cut(s)	407, 419, 896
MspI	CCGG	3 cut(s)	367, 467, 1058
MspR9I	CCNGG	5 cut(s)	10, 248, 879, 1020, 1058
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	4 cut(s)	10, 248, 879, 1020
MvnI	CGCG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	1058
NcoI	CCATGG	1 cut(s)	644
NdeII	GATC	2 cut(s)	688, 751
NlaIII	CATG	3 cut(s)	281, 346, 648
NlaIV	GGNNCC	3 cut(s)	7, 127, 855
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	3 cut(s)	430, 940, 986
PciSI	GCTCTTC	2 cut(s)	51, 329
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	7 cut(s)	356, 370, 554, 585, 622, 961, 1075
PfoI	TCCNGGA	1 cut(s)	1056
PkrI	GCNGC	2 cut(s)	642, 1016
PleI	GAGTC	2 cut(s)	485, 1061
PmaCI	CACGTG	1 cut(s)	195
PmlI	CACGTG	1 cut(s)	195
PpsI	GAGTC	2 cut(s)	485, 1061
Ppu21I	YACGTR	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	632
Psp1406I	AACGTT	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	632
Psp6I	CCWGG	4 cut(s)	8, 246, 877, 1018
PspCI	CACGTG	1 cut(s)	195
PspEI	GGTNACC	1 cut(s)	986
PspGI	CCWGG	4 cut(s)	8, 246, 877, 1018
PspN4I	GGNNCC	3 cut(s)	7, 127, 855
PspPI	GGNCC	1 cut(s)	632
PspPPI	RGGWCCY	1 cut(s)	632
PvuII	CAGCTG	3 cut(s)	407, 419, 896
RsaI	GTAC	3 cut(s)	121, 127, 173
RsaNI	GTAC	3 cut(s)	120, 126, 172
RseI	CAYNNNNRTG	1 cut(s)	801
SalI	GTCGAC	1 cut(s)	868
SapI	GCTCTTC	2 cut(s)	51, 329
SatI	GCNGC	2 cut(s)	641, 1015
Sau3AI	GATC	2 cut(s)	688, 751
Sau96I	GGNCC	1 cut(s)	632
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	2 cut(s)	486, 1062
ScrFI	CCNGG	5 cut(s)	10, 248, 879, 1020, 1058
SfaNI	GCATC	2 cut(s)	477, 684
SfcI	CTRYAG	1 cut(s)	897
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	801
Sse9I	AATT	4 cut(s)	454, 531, 558, 1084
SsiI	CCGC	2 cut(s)	496, 1015
SspMI	CTAG	6 cut(s)	59, 189, 435, 440, 509, 765
StyD4I	CCNGG	5 cut(s)	8, 246, 877, 1018, 1056
StyI	CCWWGG	2 cut(s)	644, 778
TaaI	ACNGT	2 cut(s)	284, 520
TaiI	ACGT	3 cut(s)	197, 392, 750
TaqI	TCGA	3 cut(s)	207, 459, 869
TasI	AATT	4 cut(s)	454, 531, 558, 1084
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	1 cut(s)	1017
TfiI	GAWTC	7 cut(s)	356, 370, 554, 585, 622, 961, 1075
TscAI	CASTG	3 cut(s)	40, 115, 620
TseFI	GTSAC	3 cut(s)	430, 940, 986
TseI	GCWGC	1 cut(s)	640
Tsp45I	GTSAC	3 cut(s)	430, 940, 986
TspDTI	ATGAA	5 cut(s)	5, 193, 331, 348, 643
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	40, 115, 620
VpaK11BI	GGWCC	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	6 cut(s)	59, 189, 435, 440, 509, 765
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.