Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

11317494 .. 11319400

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGGAAAACGTTGAATGGCTTTGGCCTATTTGTTTATGCTGTTCTGCTACTAATCTTGTTGCTTCTTGAACATGAAAACCAATATTGCTATGCAGGAGTTCTAAAGAATTACAAGGCGAATGAGTCGCAAATAGGCGGCTCATGCGACTTGTTTGATGGGAGCTGGGTTTATGATGAAACATATCCACTCTATGACACATCCAGCTGCCCTTTCATTGACAGAGAAGTTGACTGTCAGAAAAATGGACGCCCCGACAAGCAGTATCTCAAATACAGATGGAAGCCTAAGGGTTGTACATTGCCCAGATTCAATGGTCAGGACTTGTTGAGGAGATTAAAGGGGAAGAAGATATTATTCGTAGGGGACTCTCTGAGCTATAACCAGTGGCAGTCACTAACATGTATGCTGCACTCTGCAGTACCCAAAGCCAAATATACTTCATCGAGTAAAGGAAGTTTCTATTCGTTTCTTTTGCCTGAATATGAAGTTTCTGTTATGTTTTCTCGCAATAAGTTTCTGGTGGATCTGGTCCAAACAAAGCAGGGCATGGTTCTAAAGCTTGACTCCATTGAAGGAGGAAACTTATGGAAAGGATACGACATGCTAATCTTCAATACCTGGCATTGGTGGCTCCATACGGGACGCGATCAACCATGGAACTACATTGAATCGGGAGGCAAGATAATCAAGGATATGGATCGCCTGGCTGCGTTTAAAGAGGGATTAACTACTTGGTCCAAATGGGTGGATTCTAATGCTGGGAATACCAAAGTTTTCTTTCAGGGCATCTCTCCAACTCATTACAATGCAAAGGCATGGGGAGGGCAAATGTCAGCAAACTGCATAGGGCAAAATCAACCTTACAGTAGTTCAATATATCCTGAAGGGACACCACCAGCGGCAACTGTAGTCCATGACGTATTGAACAGAATGTCAAAGCCAGTAACTTTGTTGGACATAACATTACTATCGCAGTTGAGAAAAGATGGTCACCCGTCTCTATATGGCATAGATGGCAAGAAGGGAAATGACTGTAGCCATTGGTGTCTTGCTGGTGTCCCAGACACATGGAATGAACTATTCTATGCAATTGTAACTAATCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

371

Amino Acids

42.0

Weight (kDa)

8.56

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	48 - 99	6.6e-25	PMR5 N terminal Domain
PC-Esterase	PF13839	101 - 364	2.1e-90	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	648
AciI	CCGC	2 cut(s)	138, 902
AclI	AACGTT	1 cut(s)	11
AclWI	GGATC	2 cut(s)	534, 708
AcuI	CTGAAG	1 cut(s)	906
AcyI	GRCGYC	1 cut(s)	250
AfaI	GTAC	2 cut(s)	298, 423
AfiI	CCNNNNNNNGG	1 cut(s)	627
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	8 cut(s)	16, 71, 313, 575, 616, 671, 876, 928
AjnI	CCWGG	2 cut(s)	620, 705
AluBI	AGCT	4 cut(s)	165, 207, 378, 562
AluI	AGCT	4 cut(s)	165, 207, 378, 562
Alw26I	GTCTC	1 cut(s)	1005
AlwI	GGATC	2 cut(s)	534, 708
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	207, 409, 710
AspS9I	GGNCC	2 cut(s)	532, 738
AsuHPI	GGTGA	1 cut(s)	986
AvaII	GGWCC	2 cut(s)	532, 738
AxyI	CCTNAGG	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	194, 396, 697
BccI	CCATC	4 cut(s)	152, 273, 983, 1010
BciT130I	CCWGG	2 cut(s)	622, 707
BciVI	GTATCC	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	1005
BfmI	CTRYAG	3 cut(s)	417, 909, 1036
BfuI	GTATCC	1 cut(s)	590
BisI	GCNGC	5 cut(s)	139, 208, 410, 711, 903
BlsI	GCNGC	5 cut(s)	140, 209, 411, 712, 904
Bme1390I	CCNGG	2 cut(s)	622, 707
Bme18I	GGWCC	2 cut(s)	532, 738
BmgT120I	GGNCC	2 cut(s)	532, 738
BmiI	GGNNCC	1 cut(s)	635
BmrFI	CCNGG	2 cut(s)	622, 707
BmsI	GCATC	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	2 cut(s)	385, 944
Bse21I	CCTNAGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	622, 707
BseDI	CCNNGG	1 cut(s)	656
BseGI	GGATG	1 cut(s)	200
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	385, 944
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	194, 396, 697
BseYI	CCCAGC	2 cut(s)	165, 761
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	1 cut(s)	27
BslFI	GGGAC	4 cut(s)	380, 657, 904, 1046
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmAI	GTCTC	1 cut(s)	1005
BsmBI	CGTCTC	1 cut(s)	1005
BsmFI	GGGAC	4 cut(s)	380, 657, 904, 1046
BsnI	GGCC	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	526, 649, 700
Bsp19I	CCATGG	1 cut(s)	656
BspACI	CCGC	2 cut(s)	138, 902
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	1109
BspLI	GGNNCC	1 cut(s)	635
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	2 cut(s)	534, 708
BsrDI	GCAATG	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	385, 944
BssECI	CCNNGG	1 cut(s)	656
BssMI	GATC	3 cut(s)	526, 649, 700
BssNI	GRCGYC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	2 cut(s)	622, 707
Bst4CI	ACNGT	4 cut(s)	236, 869, 910, 1037
BstACI	GRCGYC	1 cut(s)	250
BstAUI	TGTACA	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	288, 374
BstDSI	CCRYGG	1 cut(s)	656
BstEII	GGTNACC	1 cut(s)	992
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	3 cut(s)	529, 652, 703
BstMAI	GTCTC	1 cut(s)	1005
BstMBI	GATC	3 cut(s)	526, 649, 700
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 631, 1017
BstNI	CCWGG	2 cut(s)	622, 707
BstNSI	RCATGY	2 cut(s)	405, 607
BstPI	GGTNACC	1 cut(s)	992
BstSCI	CCNGG	2 cut(s)	620, 705
BstSFI	CTRYAG	3 cut(s)	417, 909, 1036
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	3 cut(s)	194, 396, 697
BstX2I	RGATCY	1 cut(s)	526
BstXI	CCANNNNNNTGG	2 cut(s)	748, 1071
BstYI	RGATCY	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	656
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	1109
Cfr13I	GGNCC	2 cut(s)	532, 738
CseI	GACGC	2 cut(s)	258, 654
Csp6I	GTAC	2 cut(s)	297, 422
CviQI	GTAC	2 cut(s)	297, 422
DdeI	CTNAG	2 cut(s)	288, 374
DpnI	GATC	3 cut(s)	528, 651, 702
DpnII	GATC	3 cut(s)	526, 649, 700
DraI	TTTAAA	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	656
Eco47I	GGWCC	2 cut(s)	532, 738
Eco57I	CTGAAG	1 cut(s)	906
Eco81I	CCTNAGG	1 cut(s)	288
Eco91I	GGTNACC	1 cut(s)	992
EcoO65I	GGTNACC	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	620, 705
EcoT14I	CCWWGG	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	656
Esp3I	CGTCTC	1 cut(s)	1005
FaqI	GGGAC	4 cut(s)	380, 657, 904, 1046
Fnu4HI	GCNGC	5 cut(s)	139, 208, 410, 711, 903
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	5 cut(s)	139, 208, 410, 711, 903
GluI	GCNGC	5 cut(s)	139, 208, 410, 711, 903
GsaI	CCCAGC	2 cut(s)	169, 765
HaeIII	GGCC	1 cut(s)	27
HgaI	GACGC	2 cut(s)	258, 654
Hin1I	GRCGYC	1 cut(s)	250
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	6 cut(s)	125, 309, 368, 566, 671, 752
HphI	GGTGA	1 cut(s)	986
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	240, 375
Hpy188III	TCNNGA	5 cut(s)	68, 320, 675, 884, 1110
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	3 cut(s)	569, 881, 1018
HpyCH4III	ACNGT	4 cut(s)	236, 869, 910, 1037
HpyCH4IV	ACGT	2 cut(s)	11, 921
HpyCH4V	TGCA	6 cut(s)	95, 412, 419, 812, 846, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 631, 1017
HpyF3I	CTNAG	2 cut(s)	288, 374
HpySE526I	ACGT	2 cut(s)	11, 921
Hsp92I	GRCGYC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	526, 649, 700
LmnI	GCTCC	2 cut(s)	162, 639
Lsp1109I	GCAGC	3 cut(s)	194, 396, 697
LweI	GCATC	1 cut(s)	798
MaeII	ACGT	2 cut(s)	11, 921
MaeIII	GTNAC	4 cut(s)	393, 946, 992, 1096
MalI	GATC	3 cut(s)	528, 651, 702
MboI	GATC	3 cut(s)	526, 649, 700
MboII	GAAGA	3 cut(s)	358, 361, 604
MfeI	CAATTG	1 cut(s)	1092
MflI	RGATCY	1 cut(s)	526
MluCI	AATT	2 cut(s)	109, 1092
MlyI	GAGTC	3 cut(s)	134, 362, 560
MmeI	TCCRAC	2 cut(s)	821, 936
MnlI	CCTC	5 cut(s)	324, 572, 671, 715, 818
MseI	TTAA	3 cut(s)	338, 717, 728
MslI	CAYNNNNRTG	2 cut(s)	400, 807
MspA1I	CMGCKG	2 cut(s)	207, 902
MspR9I	CCNGG	2 cut(s)	622, 707
MunI	CAATTG	1 cut(s)	1092
MvaI	CCWGG	2 cut(s)	622, 707
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	3 cut(s)	144, 631, 1017
NcoI	CCATGG	1 cut(s)	656
NdeII	GATC	3 cut(s)	526, 649, 700
NlaIV	GGNNCC	1 cut(s)	635
NmuCI	GTSAC	2 cut(s)	393, 992
NspI	RCATGY	2 cut(s)	405, 607
PagI	TCATGA	1 cut(s)	1109
PciI	ACATGT	1 cut(s)	401
PfeI	GAWTC	3 cut(s)	309, 671, 752
PkrI	GCNGC	5 cut(s)	140, 209, 411, 712, 904
PleI	GAGTC	3 cut(s)	133, 362, 560
PpsI	GAGTC	3 cut(s)	133, 362, 560
PscI	ACATGT	1 cut(s)	401
Psp1406I	AACGTT	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	620, 705
PspEI	GGTNACC	1 cut(s)	992
PspFI	CCCAGC	2 cut(s)	165, 761
PspGI	CCWGG	2 cut(s)	620, 705
PspN4I	GGNNCC	1 cut(s)	635
PspPI	GGNCC	2 cut(s)	532, 738
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	207
RsaI	GTAC	2 cut(s)	298, 423
RsaNI	GTAC	2 cut(s)	297, 422
RseI	CAYNNNNRTG	2 cut(s)	400, 807
SaqAI	TTAA	3 cut(s)	338, 717, 728
SatI	GCNGC	5 cut(s)	139, 208, 410, 711, 903
Sau3AI	GATC	3 cut(s)	526, 649, 700
Sau96I	GGNCC	2 cut(s)	532, 738
SchI	GAGTC	3 cut(s)	134, 362, 560
ScrFI	CCNGG	2 cut(s)	622, 707
SetI	ASST	8 cut(s)	14, 167, 209, 380, 564, 623, 865, 924
SfaNI	GCATC	1 cut(s)	798
SfcI	CTRYAG	3 cut(s)	417, 909, 1036
SinI	GGWCC	2 cut(s)	532, 738
SmiMI	CAYNNNNRTG	2 cut(s)	400, 807
Sse9I	AATT	2 cut(s)	109, 1092
SsiI	CCGC	2 cut(s)	138, 902
SspI	AATATT	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	620, 705
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	4 cut(s)	236, 869, 910, 1037
TaiI	ACGT	2 cut(s)	14, 924
TaqI	TCGA	1 cut(s)	446
TasI	AATT	2 cut(s)	109, 1092
TatI	WGTACW	1 cut(s)	296
TauI	GCSGC	2 cut(s)	141, 905
TfiI	GAWTC	3 cut(s)	309, 671, 752
Tru1I	TTAA	3 cut(s)	338, 717, 728
Tru9I	TTAA	3 cut(s)	338, 717, 728
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	2 cut(s)	393, 992
TseI	GCWGC	3 cut(s)	207, 409, 710
Tsp45I	GTSAC	2 cut(s)	393, 992
TspDTI	ATGAA	6 cut(s)	90, 192, 205, 432, 501, 1092
TspRI	CASTG	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	532, 738
XceI	RCATGY	2 cut(s)	405, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.