Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Forward (+)

20153454 .. 20158495

Gene Structure 5042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATGTCTGGGTTAATAGTAGTTTTTGTATGAGTAGTATAGCTGTTTTCTTCCTTCTTCTTCTTGTTTCTGATTACCAAGTAGTAGTATTAGTCAATGGTGAAAGAATTGGTGTGCCATCGTCATCGTCGTCATTGTCATGTGATTTCTTCAAAGGGAGATGGATTTTGGACCAATCCTACCCGCTCTACAATCCTTCCTCATGCCCCTTCATTGAGCATGAGTTTACCTGCCAAAAGAATGGTAGACCCGATCAGATTTACACCAAATACAGATGGCAACCACATGACTGTGATTTAGCAAGATTTAACGGGCTTGACTTCTTCAAAAGATTTAGAGGGAAAAGCATCATGTTCGTTGGAGATTCATTAAGCCGAAATCAATGGCAGTCCCTAACATGCATGCTTCACTCAGCTGTGCCAACTGCTAAGTATAATGTGACAAGAGTAGACGATGTATCTATCTTCGAATTTACGGACTATGAAGTTAGAGTGATGCTAGACCGCAATGTGTATCTAGTAGATACTGTAAAAGAAAAGATTGGGAGGGTCTTGAAGCTTGATTCAATAGTGGGAGGCAAGTTATGGAAGGATATTGACATGCTCATCTTCAACACTTGGCATTGGTGGAATCGGAGAGGACCCTCTCAACCATGGGATTATGTTGAAGTAGGAGGCCAGATCAGCAAAGATATTGACCGCATGCTTGCTTTTGAGAAGGCACTTATGACTTGGGCTGGATGGGTTGATTCAAACATTGATCCTGCAAAGTCTAGGGTTTTCTTCCAAGGAATATCTCCTTCTCATTACAATGGCAGTGAATGGCAAGAACCAAGGGCAAGAAGTTGTGTAGGGCAAAAGGAGCCTTTGCTTGGGTCGACCTATCCAGGAGGTTTGCCACCAGCCTTGAGTGTGCTGAAGAATGTGTTGAGCACAATCAAAAAGCCAGTGACATTGCTAGATATAACAAATCTCTCACTCCTGCGTAAAGATGGACATCCTTCAATTTATGGGTTGGGAGGCCGCACCGGAATGGACTGTAGTCATTGGTGTCTTTGTGGAGTCCCAGATACTTGGAATGAGATTCTCTACAATTTAATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

369

Amino Acids

42.06

Weight (kDa)

7.53

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	3 cut(s)	247, 450, 878
AciI	CCGC	4 cut(s)	185, 505, 700, 1024
AclWI	GGATC	1 cut(s)	755
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	938
AfiI	CCNNNNNNNGG	1 cut(s)	872
AgsI	TTSAA	8 cut(s)	154, 328, 556, 567, 613, 668, 753, 1005
AjnI	CCWGG	1 cut(s)	886
AluBI	AGCT	3 cut(s)	44, 416, 559
AluI	AGCT	3 cut(s)	44, 416, 559
Alw21I	GWGCWC	1 cut(s)	935
AlwI	GGATC	1 cut(s)	755
AoxI	GGCC	2 cut(s)	676, 1021
ApoI	RAATTY	1 cut(s)	470
AspS9I	GGNCC	2 cut(s)	172, 641
AsuHPI	GGTGA	1 cut(s)	113
AsuII	TTCGAA	1 cut(s)	468
AvaII	GGWCC	2 cut(s)	172, 641
Bbv12I	GWGCWC	1 cut(s)	935
BccI	CCATC	5 cut(s)	127, 156, 270, 735, 986
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	1 cut(s)	888
BfaI	CTAG	4 cut(s)	500, 518, 774, 959
BfmI	CTRYAG	1 cut(s)	1039
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	1024
BlsI	GCNGC	1 cut(s)	1025
Bme1390I	CCNGG	1 cut(s)	888
Bme18I	GGWCC	2 cut(s)	172, 641
BmgT120I	GGNCC	2 cut(s)	172, 641
BmiI	GGNNCC	2 cut(s)	643, 864
BmrFI	CCNGG	1 cut(s)	888
BmsI	GCATC	2 cut(s)	357, 486
BoxI	GACNNNNGTC	1 cut(s)	1041
Bpu14I	TTCGAA	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	928
BsaBI	GATNNNNATC	1 cut(s)	996
BsaJI	CCNNGG	3 cut(s)	653, 787, 833
BsaWI	WCCGGW	1 cut(s)	1028
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	1 cut(s)	947
Bse3DI	GCAATG	2 cut(s)	514, 953
Bse8I	GATNNNNATC	1 cut(s)	996
BseBI	CCWGG	1 cut(s)	888
BseDI	CCNNGG	3 cut(s)	653, 787, 833
BseGI	GGATG	3 cut(s)	10, 746, 997
BseJI	GATNNNNATC	1 cut(s)	996
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	2 cut(s)	514, 953
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	947
BshFI	GGCC	2 cut(s)	678, 1023
BsiHKAI	GWGCWC	1 cut(s)	935
BsiSI	CCGG	1 cut(s)	1029
BslFI	GGGAC	2 cut(s)	376, 1049
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmFI	GGGAC	2 cut(s)	376, 1049
BsnI	GGCC	2 cut(s)	678, 1023
Bsp119I	TTCGAA	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp143I	GATC	3 cut(s)	253, 681, 760
Bsp19I	CCATGG	1 cut(s)	653
BspACI	CCGC	4 cut(s)	185, 505, 700, 1024
BspANI	GGCC	2 cut(s)	678, 1023
BspCNI	CTCAG	1 cut(s)	425
BspLI	GGNNCC	2 cut(s)	643, 864
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	755
BspT104I	TTCGAA	1 cut(s)	468
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	2 cut(s)	514, 953
BsrI	ACTGG	1 cut(s)	947
BssECI	CCNNGG	3 cut(s)	653, 787, 833
BssMI	GATC	3 cut(s)	253, 681, 760
BssT1I	CCWWGG	3 cut(s)	653, 787, 833
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	3 cut(s)	293, 529, 1040
BstBI	TTCGAA	1 cut(s)	468
BstC8I	GCNNGC	3 cut(s)	404, 704, 708
BstDEI	CTNAG	2 cut(s)	412, 429
BstDSI	CCRYGG	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	10, 746, 997
BstKTI	GATC	3 cut(s)	256, 684, 763
BstMBI	GATC	3 cut(s)	253, 681, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	684, 862
BstNI	CCWGG	1 cut(s)	888
BstNSI	RCATGY	4 cut(s)	402, 406, 604, 706
BstPAI	GACNNNNGTC	1 cut(s)	1041
BstSCI	CCNGG	1 cut(s)	886
BstSFI	CTRYAG	1 cut(s)	1039
BstXI	CCANNNNNNTGG	2 cut(s)	242, 1074
BsuRI	GGCC	2 cut(s)	678, 1023
BtgI	CCRYGG	1 cut(s)	653
BtsCI	GGATG	3 cut(s)	10, 746, 997
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	2 cut(s)	823, 954
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	3 cut(s)	404, 704, 708
Cfr13I	GGNCC	2 cut(s)	172, 641
CspCI	CAANNNNNGTGG	2 cut(s)	888, 923
DdeI	CTNAG	2 cut(s)	412, 429
DpnI	GATC	3 cut(s)	255, 683, 762
DpnII	GATC	3 cut(s)	253, 681, 760
Eco130I	CCWWGG	3 cut(s)	653, 787, 833
Eco47I	GGWCC	2 cut(s)	172, 641
Eco57I	CTGAAG	1 cut(s)	938
EcoO109I	RGGNCCY	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	3 cut(s)	653, 787, 833
EcoT22I	ATGCAT	1 cut(s)	404
ErhI	CCWWGG	3 cut(s)	653, 787, 833
FaqI	GGGAC	2 cut(s)	376, 1049
FauI	CCCGC	1 cut(s)	192
FblI	GTMKAC	3 cut(s)	247, 450, 878
Fnu4HI	GCNGC	1 cut(s)	1024
FokI	GGATG	3 cut(s)	17, 753, 984
Fsp4HI	GCNGC	1 cut(s)	1024
FspBI	CTAG	4 cut(s)	500, 518, 774, 959
GluI	GCNGC	1 cut(s)	1024
HaeIII	GGCC	2 cut(s)	678, 1023
HapII	CCGG	1 cut(s)	1029
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	6 cut(s)	365, 563, 631, 749, 1062, 1084
HpaII	CCGG	1 cut(s)	1029
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	4 cut(s)	228, 248, 451, 879
Hpy188I	TCNGA	3 cut(s)	73, 258, 636
Hpy188III	TCNNGA	1 cut(s)	553
Hpy8I	GTNNAC	4 cut(s)	228, 248, 451, 879
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	7 cut(s)	65, 207, 220, 583, 712, 810, 1011
HpyCH4III	ACNGT	3 cut(s)	293, 529, 1040
HpyCH4V	TGCA	2 cut(s)	402, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	684, 862
HpyF3I	CTNAG	2 cut(s)	412, 429
Kzo9I	GATC	3 cut(s)	253, 681, 760
LmnI	GCTCC	1 cut(s)	862
LweI	GCATC	2 cut(s)	357, 486
MaeI	CTAG	4 cut(s)	500, 518, 774, 959
MaeIII	GTNAC	2 cut(s)	439, 949
MalI	GATC	3 cut(s)	255, 683, 762
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	3 cut(s)	253, 681, 760
MboII	GAAGA	9 cut(s)	43, 50, 53, 142, 316, 457, 601, 775, 931
MhlI	GDGCHC	1 cut(s)	935
MluCI	AATT	5 cut(s)	108, 470, 1005, 1093, 1098
MlyI	GAGTC	1 cut(s)	1071
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	9 cut(s)	211, 332, 540, 569, 632, 655, 668, 884, 1013
Mph1103I	ATGCAT	1 cut(s)	404
MseI	TTAA	4 cut(s)	15, 309, 371, 1097
MslI	CAYNNNNRTG	4 cut(s)	139, 291, 810, 1031
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	1029
MspR9I	CCNGG	1 cut(s)	888
MvaI	CCWGG	1 cut(s)	888
MwoI	GCNNNNNNNGC	2 cut(s)	684, 862
NcoI	CCATGG	1 cut(s)	653
NdeII	GATC	3 cut(s)	253, 681, 760
NlaIV	GGNNCC	2 cut(s)	643, 864
NmuCI	GTSAC	2 cut(s)	439, 949
NsiI	ATGCAT	1 cut(s)	404
NspI	RCATGY	4 cut(s)	402, 406, 604, 706
NspV	TTCGAA	1 cut(s)	468
PaeI	GCATGC	2 cut(s)	406, 706
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PfeI	GAWTC	5 cut(s)	365, 563, 631, 749, 1084
PfoI	TCCNGGA	1 cut(s)	886
PkrI	GCNGC	1 cut(s)	1025
PleI	GAGTC	1 cut(s)	1070
PpsI	GAGTC	1 cut(s)	1070
PpuMI	RGGWCCY	1 cut(s)	641
PshAI	GACNNNNGTC	1 cut(s)	1041
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	2 cut(s)	643, 864
PspPI	GGNCC	2 cut(s)	172, 641
PspPPI	RGGWCCY	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	416
RseI	CAYNNNNRTG	4 cut(s)	139, 291, 810, 1031
SalI	GTCGAC	1 cut(s)	877
SaqAI	TTAA	4 cut(s)	15, 309, 371, 1097
SatI	GCNGC	1 cut(s)	1024
Sau3AI	GATC	3 cut(s)	253, 681, 760
Sau96I	GGNCC	2 cut(s)	172, 641
SchI	GAGTC	1 cut(s)	1071
ScrFI	CCNGG	1 cut(s)	888
SduI	GDGCHC	1 cut(s)	935
SetI	ASST	6 cut(s)	46, 233, 418, 561, 884, 895
SfaNI	GCATC	2 cut(s)	357, 486
SfcI	CTRYAG	1 cut(s)	1039
SfuI	TTCGAA	1 cut(s)	468
SinI	GGWCC	2 cut(s)	172, 641
SmiMI	CAYNNNNRTG	4 cut(s)	139, 291, 810, 1031
SmlI	CTYRAG	1 cut(s)	907
SmoI	CTYRAG	1 cut(s)	907
SphI	GCATGC	2 cut(s)	406, 706
Sse9I	AATT	5 cut(s)	108, 470, 1005, 1093, 1098
SsiI	CCGC	4 cut(s)	185, 505, 700, 1024
SspMI	CTAG	4 cut(s)	500, 518, 774, 959
StyD4I	CCNGG	1 cut(s)	886
StyI	CCWWGG	3 cut(s)	653, 787, 833
TaaI	ACNGT	3 cut(s)	293, 529, 1040
TaqI	TCGA	2 cut(s)	468, 878
TasI	AATT	5 cut(s)	108, 470, 1005, 1093, 1098
TauI	GCSGC	1 cut(s)	1026
TfiI	GAWTC	5 cut(s)	365, 563, 631, 749, 1084
Tru1I	TTAA	4 cut(s)	15, 309, 371, 1097
Tru9I	TTAA	4 cut(s)	15, 309, 371, 1097
TscAI	CASTG	2 cut(s)	823, 954
TseFI	GTSAC	2 cut(s)	439, 949
Tsp45I	GTSAC	2 cut(s)	439, 949
TspDTI	ATGAA	3 cut(s)	202, 357, 498
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	823, 954
VpaK11BI	GGWCC	2 cut(s)	172, 641
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	4 cut(s)	402, 406, 604, 706
XmiI	GTMKAC	3 cut(s)	247, 450, 878
XspI	CTAG	4 cut(s)	500, 518, 774, 959
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.