Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Forward (+)

33426081 .. 33431327

Gene Structure 5247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1246700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGATGTCTGGGTTAATAGTAGTTTTTGTATGAGTAGTATAGCTGTTTTCCTCCTTCTTCTTGTTGTTTCTGATTACCAAGTAGTAGTATTATTAAATGGTGAAAGAATTGGTGAGCCATCGTCATCGTCGTCATTGTCATGTGATTTCTTCAAAGGGAGATGGATTTTGGACCAATCCTACCCGCTCTACAATCCTTCCTCATGCCCCTTCATTGAGCATGAGTTTACCTGCCAAAAGAATGGCCGTCCCGATCAGATTTACACCAAATACAGATGGCAACCACATGACTGTGATTTAGCAAGATTTAACGGGCTTGACTTCTTCAAAAGATTTAGAGGGAAAAGCATCATGTTCGTTGGAGATTCATTAAGCCGAAATCAATGGCAGTCCCTAACATGCATGCTTCACTCGGCTGTGCCAACTGCTAAGTATAATGTGACAAGAGTAGACGATGTATCTATCTTCGAATTTACGGATTATGAAGTTAGAGTGATGCTAGACCGCAATGTGTATCTAGTAGATACTGTAAAAGAAAAGATTGGGAGGGTCTTGAAGCTTGATTCAATAATGGGAGGCAAGTTATGGAAGGATATTGACATGCTCATCTTCAACACTTGGCATTGGTGGAATCGGAGAGGACCCACTCAACCATGGGATTATGTTGAAGTAGGAGGCCAGATAAGCAAAGACATTGACCGCATGTTTGCTTTTGAGAAGGCACTTATTACTTGGGCTGGATGGGTTGATTCAAACATTGATCCTGCAAAGTCTAGGGTTTTCTTCCAGGGAATATCTCCTTCTCATTACAATGGCAGTGAATGGCAAGAACCAAAGGCAAGAAGTTGTGTAGGGCAAAAGGAGCCTTTGCTTGGGTCGACCTATCCAGGAGGTTTGCCACCAGCTTTGAGTGTGCTGAAGAATGTGTTGAGCACAATAAAAAAGCCAGTGACATTGCTAGATATAACAAATCTCTCACTCCTGCGTAAAGATGGACATCCTTCAATTTATGGGTTGGGAGGCCGCACCGGAATGGACTGTAGTCATTGGTGTCTTTGTGGAGTCCCAGATACTTGGAATGAGATTCTCTACAATTTTATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

369

Amino Acids

42.12

Weight (kDa)

7.02

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	47 - 99	2.3e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	100 - 365	3.7e-90	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	239
AccBSI	CCGCTC	1 cut(s)	187
AccI	GTMKAC	2 cut(s)	450, 878
AciI	CCGC	4 cut(s)	185, 505, 700, 1024
AclWI	GGATC	1 cut(s)	755
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	938
AfiI	CCNNNNNNNGG	1 cut(s)	872
AgsI	TTSAA	8 cut(s)	154, 328, 556, 567, 613, 668, 753, 1005
AjnI	CCWGG	2 cut(s)	786, 886
AluBI	AGCT	3 cut(s)	44, 559, 905
AluI	AGCT	3 cut(s)	44, 559, 905
Alw21I	GWGCWC	1 cut(s)	935
AlwI	GGATC	1 cut(s)	755
AoxI	GGCC	3 cut(s)	244, 676, 1021
ApoI	RAATTY	1 cut(s)	470
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
AspS9I	GGNCC	2 cut(s)	172, 641
AsuHPI	GGTGA	2 cut(s)	113, 125
AsuII	TTCGAA	1 cut(s)	468
AvaII	GGWCC	2 cut(s)	172, 641
Bbv12I	GWGCWC	1 cut(s)	935
BccI	CCATC	5 cut(s)	127, 156, 270, 735, 986
BceAI	ACGGC	1 cut(s)	231
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BciT130I	CCWGG	2 cut(s)	788, 888
BfaI	CTAG	4 cut(s)	500, 518, 774, 959
BfmI	CTRYAG	1 cut(s)	1039
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	1 cut(s)	1024
BlsI	GCNGC	1 cut(s)	1025
Bme1390I	CCNGG	2 cut(s)	788, 888
Bme18I	GGWCC	2 cut(s)	172, 641
BmgT120I	GGNCC	2 cut(s)	172, 641
BmiI	GGNNCC	2 cut(s)	643, 864
BmrFI	CCNGG	2 cut(s)	788, 888
BmsI	GCATC	2 cut(s)	357, 486
BoxI	GACNNNNGTC	1 cut(s)	1041
Bpu14I	TTCGAA	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	996
BsaJI	CCNNGG	2 cut(s)	653, 787
BsaWI	WCCGGW	1 cut(s)	1028
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse1I	ACTGG	1 cut(s)	947
Bse3DI	GCAATG	2 cut(s)	514, 953
Bse8I	GATNNNNATC	1 cut(s)	996
BseBI	CCWGG	2 cut(s)	788, 888
BseDI	CCNNGG	2 cut(s)	653, 787
BseGI	GGATG	3 cut(s)	10, 746, 997
BseJI	GATNNNNATC	1 cut(s)	996
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	2 cut(s)	514, 953
BseNI	ACTGG	1 cut(s)	947
BshFI	GGCC	3 cut(s)	246, 678, 1023
BsiHKAI	GWGCWC	1 cut(s)	935
BsiSI	CCGG	1 cut(s)	1029
BslFI	GGGAC	3 cut(s)	234, 376, 1049
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmFI	GGGAC	3 cut(s)	234, 376, 1049
BsnI	GGCC	3 cut(s)	246, 678, 1023
Bsp119I	TTCGAA	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp143I	GATC	2 cut(s)	253, 760
Bsp19I	CCATGG	1 cut(s)	653
BspACI	CCGC	4 cut(s)	185, 505, 700, 1024
BspANI	GGCC	3 cut(s)	246, 678, 1023
BspLI	GGNNCC	2 cut(s)	643, 864
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	755
BspT104I	TTCGAA	1 cut(s)	468
BsrBI	CCGCTC	1 cut(s)	187
BsrDI	GCAATG	2 cut(s)	514, 953
BsrI	ACTGG	1 cut(s)	947
BssECI	CCNNGG	2 cut(s)	653, 787
BssMI	GATC	2 cut(s)	253, 760
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	2 cut(s)	788, 888
Bst4CI	ACNGT	3 cut(s)	293, 529, 1040
BstBI	TTCGAA	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	10, 746, 997
BstKTI	GATC	2 cut(s)	256, 763
BstMBI	GATC	2 cut(s)	253, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	684, 862
BstNI	CCWGG	2 cut(s)	788, 888
BstNSI	RCATGY	4 cut(s)	402, 406, 604, 706
BstPAI	GACNNNNGTC	1 cut(s)	1041
BstSCI	CCNGG	2 cut(s)	786, 886
BstSFI	CTRYAG	1 cut(s)	1039
BstXI	CCANNNNNNTGG	2 cut(s)	242, 1074
BsuRI	GGCC	3 cut(s)	246, 678, 1023
BtgI	CCRYGG	1 cut(s)	653
BtsCI	GGATG	3 cut(s)	10, 746, 997
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	2 cut(s)	823, 954
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	172, 641
CspCI	CAANNNNNGTGG	2 cut(s)	888, 923
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	2 cut(s)	255, 762
DpnII	GATC	2 cut(s)	253, 760
EaeI	YGGCCR	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	653
Eco47I	GGWCC	2 cut(s)	172, 641
Eco57I	CTGAAG	1 cut(s)	938
EcoO109I	RGGNCCY	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	786, 886
EcoT14I	CCWWGG	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	653
FaqI	GGGAC	3 cut(s)	234, 376, 1049
FauI	CCCGC	1 cut(s)	192
FblI	GTMKAC	2 cut(s)	450, 878
Fnu4HI	GCNGC	1 cut(s)	1024
FokI	GGATG	3 cut(s)	17, 753, 984
Fsp4HI	GCNGC	1 cut(s)	1024
FspBI	CTAG	4 cut(s)	500, 518, 774, 959
GluI	GCNGC	1 cut(s)	1024
HaeIII	GGCC	3 cut(s)	246, 678, 1023
HapII	CCGG	1 cut(s)	1029
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	6 cut(s)	365, 563, 631, 749, 1062, 1084
HpaII	CCGG	1 cut(s)	1029
HphI	GGTGA	2 cut(s)	113, 125
Hpy166II	GTNNAC	3 cut(s)	228, 451, 879
Hpy188I	TCNGA	3 cut(s)	73, 258, 636
Hpy188III	TCNNGA	2 cut(s)	251, 553
Hpy8I	GTNNAC	3 cut(s)	228, 451, 879
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	7 cut(s)	65, 207, 220, 583, 712, 810, 1011
HpyCH4III	ACNGT	3 cut(s)	293, 529, 1040
HpyCH4V	TGCA	2 cut(s)	402, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	684, 862
HpyF3I	CTNAG	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	253, 760
LmnI	GCTCC	1 cut(s)	862
LweI	GCATC	2 cut(s)	357, 486
MaeI	CTAG	4 cut(s)	500, 518, 774, 959
MaeIII	GTNAC	2 cut(s)	439, 949
MalI	GATC	2 cut(s)	255, 762
MbiI	CCGCTC	1 cut(s)	187
MboI	GATC	2 cut(s)	253, 760
MboII	GAAGA	7 cut(s)	50, 142, 316, 457, 601, 775, 931
MhlI	GDGCHC	1 cut(s)	935
MluCI	AATT	4 cut(s)	108, 470, 1005, 1093
MlyI	GAGTC	1 cut(s)	1071
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	9 cut(s)	62, 211, 332, 540, 569, 632, 668, 884, 1013
Mph1103I	ATGCAT	1 cut(s)	404
MseI	TTAA	4 cut(s)	15, 95, 309, 371
MslI	CAYNNNNRTG	4 cut(s)	139, 291, 810, 1031
MspI	CCGG	1 cut(s)	1029
MspR9I	CCNGG	2 cut(s)	788, 888
MvaI	CCWGG	2 cut(s)	788, 888
MwoI	GCNNNNNNNGC	2 cut(s)	684, 862
NcoI	CCATGG	1 cut(s)	653
NdeII	GATC	2 cut(s)	253, 760
NlaIV	GGNNCC	2 cut(s)	643, 864
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	2 cut(s)	439, 949
NsiI	ATGCAT	1 cut(s)	404
NspI	RCATGY	4 cut(s)	402, 406, 604, 706
NspV	TTCGAA	1 cut(s)	468
PaeI	GCATGC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PfeI	GAWTC	5 cut(s)	365, 563, 631, 749, 1084
PfoI	TCCNGGA	1 cut(s)	886
PkrI	GCNGC	1 cut(s)	1025
PleI	GAGTC	1 cut(s)	1070
PpsI	GAGTC	1 cut(s)	1070
PpuMI	RGGWCCY	1 cut(s)	641
PshAI	GACNNNNGTC	1 cut(s)	1041
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	786, 886
PspGI	CCWGG	2 cut(s)	786, 886
PspN4I	GGNNCC	2 cut(s)	643, 864
PspPI	GGNCC	2 cut(s)	172, 641
PspPPI	RGGWCCY	1 cut(s)	641
RseI	CAYNNNNRTG	4 cut(s)	139, 291, 810, 1031
SalI	GTCGAC	1 cut(s)	877
SaqAI	TTAA	4 cut(s)	15, 95, 309, 371
SatI	GCNGC	1 cut(s)	1024
Sau3AI	GATC	2 cut(s)	253, 760
Sau96I	GGNCC	2 cut(s)	172, 641
SchI	GAGTC	1 cut(s)	1071
ScrFI	CCNGG	2 cut(s)	788, 888
SduI	GDGCHC	1 cut(s)	935
SetI	ASST	6 cut(s)	46, 233, 561, 884, 895, 907
SfaNI	GCATC	2 cut(s)	357, 486
SfcI	CTRYAG	1 cut(s)	1039
SfuI	TTCGAA	1 cut(s)	468
SinI	GGWCC	2 cut(s)	172, 641
SmiMI	CAYNNNNRTG	4 cut(s)	139, 291, 810, 1031
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	4 cut(s)	108, 470, 1005, 1093
SsiI	CCGC	4 cut(s)	185, 505, 700, 1024
SspMI	CTAG	4 cut(s)	500, 518, 774, 959
StyD4I	CCNGG	2 cut(s)	786, 886
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	3 cut(s)	293, 529, 1040
TaqI	TCGA	2 cut(s)	468, 878
TasI	AATT	4 cut(s)	108, 470, 1005, 1093
TauI	GCSGC	1 cut(s)	1026
TfiI	GAWTC	5 cut(s)	365, 563, 631, 749, 1084
Tru1I	TTAA	4 cut(s)	15, 95, 309, 371
Tru9I	TTAA	4 cut(s)	15, 95, 309, 371
TscAI	CASTG	2 cut(s)	823, 954
TseFI	GTSAC	2 cut(s)	439, 949
Tsp45I	GTSAC	2 cut(s)	439, 949
TspDTI	ATGAA	3 cut(s)	202, 357, 498
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	823, 954
VpaK11BI	GGWCC	2 cut(s)	172, 641
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	4 cut(s)	402, 406, 604, 706
XmiI	GTMKAC	2 cut(s)	450, 878
XspI	CTAG	4 cut(s)	500, 518, 774, 959
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.