Rh5AG207700

Protein trichome birefringence-like 41

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002416
Physical Location & Seq
Reverse (-)
24479131 .. 24481179
2049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG207700.1

Sequence Viewer

Length: 423 bp
ATGAAAGACATGGATCGGATGCTTGCTTTTGAGAAGGCACTCACAACTTGGGGTCAATGGGTGGATACAAACGTTGATCCTGCAAAAACTGAAGTTTTCTTCCAAGGGATTTCACCCTCCCATTACAATGGGACTGATTGGGGTGAGCCAAAAGCAAGGACTTGCGAGGGGCAGAAGGAGCCTTTGTTGGGGTCGACCTACCCAGGAGGGTTGCCACCAGCTCTGGGTGTGCTGAAGAATGCTTTAAGCAAAATCACAAAGCCTGTGACATTGCTGGACATAACAAACCTCTCCCTCCTTCGTAAAGATGGCCACCCTTCAATTTATGGGTTGGGAGGCCGCACAGGGATGGATTGTAGTCATTGGTGTCTTTGCGGAGTCCCAGATACTTGGAACGAGATTCTTTACAATTTTCTTCTTTGA

Protein Analysis

140

Amino Acids

15.47

Weight (kDa)

5.86

Isoelectric Point (pI)

20.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 2 - 137 4.2e-45 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AciI CCGC 2 cut(s) 340, 375
AclI AACGTT 1 cut(s) 72
AclWI GGATC 2 cut(s) 21, 71
AcoI YGGCCR 1 cut(s) 310
AcuI CTGAAG 2 cut(s) 111, 254
AfiI CCNNNNNNNGG 2 cut(s) 188, 224
AgsI TTSAA 1 cut(s) 321
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 2 cut(s) 21, 71
AoxI GGCC 2 cut(s) 310, 337
AsuHPI GGTGA 2 cut(s) 105, 155
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BalI TGGCCA 1 cut(s) 312
BccI CCATC 2 cut(s) 302, 343
BciT130I CCWGG 1 cut(s) 204
BciVI GTATCC 1 cut(s) 58
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 103, 202
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 224
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 103, 202
BseGI GGATG 2 cut(s) 24, 354
BseLI CCNNNNNNNGG 2 cut(s) 188, 224
BseMI GCAATG 1 cut(s) 269
BshFI GGCC 2 cut(s) 312, 339
BslFI GGGAC 2 cut(s) 145, 365
BslI CCNNNNNNNGG 2 cut(s) 188, 224
BsmFI GGGAC 2 cut(s) 145, 365
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 2 cut(s) 312, 339
Bsp143I GATC 2 cut(s) 13, 76
BspACI CCGC 2 cut(s) 340, 375
BspANI GGCC 2 cut(s) 312, 339
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 2 cut(s) 21, 71
BsrDI GCAATG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 103, 202
BssMI GATC 2 cut(s) 13, 76
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 24
BstF5I GGATG 2 cut(s) 24, 354
BstKTI GATC 2 cut(s) 16, 79
BstMBI GATC 2 cut(s) 13, 76
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstXI CCANNNNNNTGG 2 cut(s) 128, 390
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 312, 339
BtsCI GGATG 2 cut(s) 24, 354
Cac8I GCNNGC 1 cut(s) 24
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 148, 181, 221, 262, 312, 339
CviKI_1 RGCY 6 cut(s) 148, 181, 221, 262, 312, 339
DpnI GATC 2 cut(s) 15, 78
DpnII GATC 2 cut(s) 13, 76
EaeI YGGCCR 1 cut(s) 310
Eco130I CCWWGG 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 111, 254
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 281, 327
FaqI GGGAC 2 cut(s) 145, 365
FatI CATG 1 cut(s) 9
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 340
FokI GGATG 2 cut(s) 31, 361
Fsp4HI GCNGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 2 cut(s) 312, 339
Hin1II CATG 1 cut(s) 13
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 2 cut(s) 378, 400
HphI GGTGA 2 cut(s) 105, 155
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 28, 169, 308, 327
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 76
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 9 cut(s) 93, 189, 209, 216, 231, 260, 276, 330, 396
LweI GCATC 1 cut(s) 9
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 265
MalI GATC 2 cut(s) 15, 78
MboI GATC 2 cut(s) 13, 76
MboII GAAGA 3 cut(s) 91, 247, 407
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 2 cut(s) 321, 409
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 387
MnlI CCTC 6 cut(s) 127, 160, 200, 299, 305, 329
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 2 cut(s) 126, 347
Msp20I TGGCCA 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 13, 76
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 265
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 1 cut(s) 341
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
Psp1406I AACGTT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 180
RseI CAYNNNNRTG 2 cut(s) 126, 347
SalI GTCGAC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 2 cut(s) 13, 76
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 204
SetI ASST 4 cut(s) 75, 200, 223, 291
SfaNI GCATC 1 cut(s) 9
SmiMI CAYNNNNRTG 2 cut(s) 126, 347
Sse9I AATT 2 cut(s) 321, 409
SsiI CCGC 2 cut(s) 340, 375
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 103
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 321, 409
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.