Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

23195765 .. 23198450

Gene Structure 2686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30897

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGGAAAATGTTGAATGGCTTTGGCCTATTTGTTTATGCTGTTCTAATACCAATCTTATTGCTTCTTGAACATGAAAACCAATATTGCTTTGCAGGAGTACTAGAGAAGAAGAACAATGAGTCGCAAATCGGCACCAAATGCGACTTGTTTGATGGGAGTTGGGTTTACGATGATACATATCCACTCTACGACACATCCAGCTGCCCTTTTATTGACAGAGAGTTCGACTGTCAGAAAAATGGTCGCCCGGATAATCAATATCTCAAGTATAGATGGAAGCCTAAGGGTTGTGCATTGCCCAGATTCAATGGTCAGGCCTTCTTGAGGAGATTAAAGGGGAAGAAGATATTATTCGTAGGGGACTCTCTGAGCTATAACCAGTACGTGGCAGAATATGAAGTTTCTGTGATGTTTTCTCGCAATAAGTTTCTAGTGGATCTGGTCCAAACAAAGGAGGGCATGGTTCTAAACCTTGACTCTATTGAAGGAGGAAAGTTGTGGAAAGGATACGACATGCTAATCTTCAATACCTGGCATTGGTGGCTCCATACGGGACGCGATCAACCATGGAAGTACATTGAATCGGGAGGCAAGATACTGAAGGATATGGATCGTCTGGCTGCGTTTAGAGAGGGATTAACTAGTTGGTCCAAATGGGTCGATTCTAACGTTGGCAACACCAAAGTTTTCTTTCAGGGCATCTCTCCAACTCATTTCAATGGAGAGGAATGGGGAGGGCAAAAATCAGCAAACTGCATAGGACAAACTCAACCTGTTAATGGTTCAACATATCCCGGAGGTTTACCACCACCGGCAGCGGTGGTCCATGAAGTATTGAACAAAATGTCACAGCCAGTAACTCTGTTGGACATAACGTTACTATCCCAACTGAGAAAAGATGGTCACCCATCTCTATATGGCATAGTTGGCAAAAAGGGAAATGACTGTAGCCATTGGTGTCTTGCTGGTGTTCCGGACACATGGAATGAACTATTCTATGCAATTCTTGTGACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

340

Amino Acids

38.63

Weight (kDa)

7.55

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	47 - 98	4.6e-25	PMR5 N terminal Domain
PC-Esterase	PF13839	100 - 129	8.9e-09	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	130 - 335	2.2e-64	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccII	CGCG	1 cut(s)	561
AccIII	TCCGGA	1 cut(s)	976
AciI	CCGC	1 cut(s)	821
AclI	AACGTT	2 cut(s)	672, 878
AclWI	GGATC	2 cut(s)	447, 621
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	3 cut(s)	102, 386, 578
AfiI	CCNNNNNNNGG	5 cut(s)	327, 388, 454, 540, 782
AgsI	TTSAA	9 cut(s)	16, 71, 310, 488, 529, 584, 721, 789, 841
AhlI	ACTAGT	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	2 cut(s)	204, 375
AluI	AGCT	2 cut(s)	204, 375
AlwI	GGATC	2 cut(s)	447, 621
Aor13HI	TCCGGA	1 cut(s)	976
AoxI	GGCC	2 cut(s)	25, 318
ApeKI	GCWGC	3 cut(s)	204, 623, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	3 cut(s)	445, 651, 826
AsuC2I	CCSGG	2 cut(s)	251, 798
AsuHPI	GGTGA	1 cut(s)	899
AvaII	GGWCC	3 cut(s)	445, 651, 826
AxyI	CCTNAGG	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	191, 610, 830
BccI	CCATC	4 cut(s)	149, 270, 896, 919
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	503
BcnI	CCSGG	2 cut(s)	251, 798
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	3 cut(s)	104, 434, 645
BfmI	CTRYAG	1 cut(s)	949
BfuI	GTATCC	1 cut(s)	503
BisI	GCNGC	3 cut(s)	205, 624, 819
BlsI	GCNGC	3 cut(s)	206, 625, 820
BmcAI	AGTACT	1 cut(s)	102
Bme1390I	CCNGG	3 cut(s)	251, 535, 798
Bme18I	GGWCC	3 cut(s)	445, 651, 826
BmgT120I	GGNCC	3 cut(s)	445, 651, 826
BmiI	GGNNCC	2 cut(s)	136, 548
BmrFI	CCNGG	3 cut(s)	251, 535, 798
BmsI	GCATC	1 cut(s)	711
BpuEI	CTTGAG	2 cut(s)	251, 346
BpuMI	CCSGG	2 cut(s)	251, 798
BsaAI	YACGTR	1 cut(s)	388
BsaBI	GATNNNNATC	2 cut(s)	180, 612
BsaJI	CCNNGG	1 cut(s)	569
BsaWI	WCCGGW	1 cut(s)	976
Bsc4I	CCNNNNNNNGG	5 cut(s)	327, 388, 454, 540, 782
Bse118I	RCCGGY	1 cut(s)	814
Bse1I	ACTGG	2 cut(s)	382, 857
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	296
Bse8I	GATNNNNATC	2 cut(s)	180, 612
BseAI	TCCGGA	1 cut(s)	976
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	197
BseJI	GATNNNNATC	2 cut(s)	180, 612
BseLI	CCNNNNNNNGG	5 cut(s)	327, 388, 454, 540, 782
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	2 cut(s)	362, 884
BseNI	ACTGG	2 cut(s)	382, 857
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	3 cut(s)	191, 610, 830
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	27, 320
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	4 cut(s)	251, 798, 815, 977
BslFI	GGGAC	2 cut(s)	377, 570
BslI	CCNNNNNNNGG	5 cut(s)	327, 388, 454, 540, 782
BsmFI	GGGAC	2 cut(s)	377, 570
BsnI	GGCC	2 cut(s)	27, 320
Bsp13I	TCCGGA	1 cut(s)	976
Bsp143I	GATC	3 cut(s)	439, 562, 613
Bsp19I	CCATGG	1 cut(s)	569
BspACI	CCGC	1 cut(s)	821
BspANI	GGCC	2 cut(s)	27, 320
BspCNI	CTCAG	2 cut(s)	363, 885
BspEI	TCCGGA	1 cut(s)	976
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	136, 548
BspPI	GGATC	2 cut(s)	447, 621
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	814
BsrI	ACTGG	2 cut(s)	382, 857
BssAI	RCCGGY	1 cut(s)	814
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	3 cut(s)	439, 562, 613
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	2 cut(s)	233, 950
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	285, 371, 893
BstDSI	CCRYGG	1 cut(s)	569
BstEII	GGTNACC	1 cut(s)	905
BstENI	CCTNNNNNAGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	561
BstKTI	GATC	3 cut(s)	442, 565, 616
BstMBI	GATC	3 cut(s)	439, 562, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 544, 930
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	520
BstPI	GGTNACC	1 cut(s)	905
BstSCI	CCNGG	3 cut(s)	249, 533, 796
BstSFI	CTRYAG	1 cut(s)	949
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	191, 610, 830
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	27, 320
BtgI	CCRYGG	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	814
Cfr13I	GGNCC	3 cut(s)	445, 651, 826
CseI	GACGC	1 cut(s)	567
Csp6I	GTAC	3 cut(s)	101, 385, 577
CviAII	CATG	6 cut(s)	74, 463, 517, 570, 830, 984
CviQI	GTAC	3 cut(s)	101, 385, 577
DdeI	CTNAG	3 cut(s)	285, 371, 893
DpnI	GATC	3 cut(s)	441, 564, 615
DpnII	GATC	3 cut(s)	439, 562, 613
Eco130I	CCWWGG	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	320
Eco47I	GGWCC	3 cut(s)	445, 651, 826
Eco57I	CTGAAG	1 cut(s)	623
Eco81I	CCTNAGG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	905
EcoNI	CCTNNNNNAGG	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	905
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	6 cut(s)	77, 466, 520, 573, 833, 987
FaqI	GGGAC	2 cut(s)	377, 570
FatI	CATG	6 cut(s)	73, 462, 516, 569, 829, 983
Fnu4HI	GCNGC	3 cut(s)	205, 624, 819
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	205, 624, 819
FspBI	CTAG	3 cut(s)	104, 434, 645
GluI	GCNGC	3 cut(s)	205, 624, 819
HaeIII	GGCC	2 cut(s)	27, 320
HapII	CCGG	4 cut(s)	251, 798, 815, 977
HgaI	GACGC	1 cut(s)	567
Hin1II	CATG	6 cut(s)	77, 466, 520, 573, 833, 987
HinfI	GANTC	6 cut(s)	122, 306, 365, 479, 584, 665
HpaII	CCGG	4 cut(s)	251, 798, 815, 977
HphI	GGTGA	1 cut(s)	899
Hpy166II	GTNNAC	2 cut(s)	169, 806
Hpy188I	TCNGA	2 cut(s)	237, 372
Hpy188III	TCNNGA	4 cut(s)	68, 325, 588, 977
Hpy8I	GTNNAC	2 cut(s)	169, 806
HpyAV	CCTTC	3 cut(s)	331, 482, 598
HpyCH4III	ACNGT	2 cut(s)	233, 950
HpyCH4IV	ACGT	3 cut(s)	387, 672, 878
HpyCH4V	TGCA	4 cut(s)	95, 296, 759, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 544, 930
HpyF3I	CTNAG	3 cut(s)	285, 371, 893
HpySE526I	ACGT	3 cut(s)	387, 672, 878
Hsp92II	CATG	6 cut(s)	77, 466, 520, 573, 833, 987
Kpn2I	TCCGGA	1 cut(s)	976
Kzo9I	GATC	3 cut(s)	439, 562, 613
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	3 cut(s)	191, 610, 830
LweI	GCATC	1 cut(s)	711
MaeI	CTAG	3 cut(s)	104, 434, 645
MaeII	ACGT	3 cut(s)	387, 672, 878
MaeIII	GTNAC	5 cut(s)	849, 859, 879, 905, 1012
MalI	GATC	3 cut(s)	441, 564, 615
MboI	GATC	3 cut(s)	439, 562, 613
MboII	GAAGA	5 cut(s)	121, 124, 355, 358, 517
MflI	RGATCY	1 cut(s)	439
MluCI	AATT	1 cut(s)	1005
MlyI	GAGTC	3 cut(s)	131, 359, 473
MmeI	TCCRAC	2 cut(s)	734, 849
MnlI	CCTC	8 cut(s)	321, 451, 485, 584, 628, 721, 731, 794
MroI	TCCGGA	1 cut(s)	976
MseI	TTAA	4 cut(s)	335, 641, 780, 1021
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	2 cut(s)	204, 821
MspI	CCGG	4 cut(s)	251, 798, 815, 977
MspR9I	CCNGG	3 cut(s)	251, 535, 798
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	141, 544, 930
NciI	CCSGG	2 cut(s)	251, 798
NcoI	CCATGG	1 cut(s)	569
NdeII	GATC	3 cut(s)	439, 562, 613
NlaIII	CATG	6 cut(s)	77, 466, 520, 573, 833, 987
NlaIV	GGNNCC	2 cut(s)	136, 548
NmuCI	GTSAC	3 cut(s)	849, 905, 1012
NspI	RCATGY	1 cut(s)	520
PceI	AGGCCT	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	306, 584, 665
PflMI	CCANNNNNTGG	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	796
PkrI	GCNGC	3 cut(s)	206, 625, 820
PleI	GAGTC	3 cut(s)	130, 359, 473
PpsI	GAGTC	3 cut(s)	130, 359, 473
Ppu21I	YACGTR	1 cut(s)	388
Psp1406I	AACGTT	2 cut(s)	672, 878
Psp6I	CCWGG	1 cut(s)	533
PspEI	GGTNACC	1 cut(s)	905
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	2 cut(s)	136, 548
PspPI	GGNCC	3 cut(s)	445, 651, 826
PsuI	RGATCY	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	204
RsaI	GTAC	3 cut(s)	102, 386, 578
RsaNI	GTAC	3 cut(s)	101, 385, 577
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	4 cut(s)	335, 641, 780, 1021
SatI	GCNGC	3 cut(s)	205, 624, 819
Sau3AI	GATC	3 cut(s)	439, 562, 613
Sau96I	GGNCC	3 cut(s)	445, 651, 826
ScaI	AGTACT	1 cut(s)	102
SchI	GAGTC	3 cut(s)	131, 359, 473
ScrFI	CCNGG	3 cut(s)	251, 535, 798
SetI	ASST	9 cut(s)	206, 377, 390, 477, 536, 675, 778, 805, 881
SfaNI	GCATC	1 cut(s)	711
SfcI	CTRYAG	1 cut(s)	949
SinI	GGWCC	3 cut(s)	445, 651, 826
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	2 cut(s)	266, 325
SmoI	CTYRAG	2 cut(s)	266, 325
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	1 cut(s)	1005
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	1 cut(s)	821
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	3 cut(s)	104, 434, 645
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	3 cut(s)	249, 533, 796
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	2 cut(s)	233, 950
TaiI	ACGT	3 cut(s)	390, 675, 881
TaqI	TCGA	2 cut(s)	228, 663
TasI	AATT	1 cut(s)	1005
TatI	WGTACW	2 cut(s)	100, 576
TfiI	GAWTC	3 cut(s)	306, 584, 665
Tru1I	TTAA	4 cut(s)	335, 641, 780, 1021
Tru9I	TTAA	4 cut(s)	335, 641, 780, 1021
TseFI	GTSAC	3 cut(s)	849, 905, 1012
TseI	GCWGC	3 cut(s)	204, 623, 818
Tsp45I	GTSAC	3 cut(s)	849, 905, 1012
TspDTI	ATGAA	4 cut(s)	90, 414, 846, 1005
Van91I	CCANNNNNTGG	1 cut(s)	388
VpaK11BI	GGWCC	3 cut(s)	445, 651, 826
XagI	CCTNNNNNAGG	1 cut(s)	325
XceI	RCATGY	1 cut(s)	520
XspI	CTAG	3 cut(s)	104, 434, 645
ZrmI	AGTACT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.