Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Forward (+)

38485028 .. 38490652

Gene Structure 5625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1268800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGGAAATATGTTGCAGGGCTTTGGCTTTTTTTCTTATGCCGCTCTACTCATTTTTCTATGCCTCCATTTGGAAGGCCAATATTATTCATATGCAAAAGGATGTGATTTTTTTCAAGGGAGTTGGGTTTATGATGATAGCTATCCACTCTATGACACATCGAGCTGCCCTTTCGTTGAGGAAGAGTTTGATTGCCAGAAAAATGGACGGCCAGACGATCAGTATCTCAAATATAGATGGAAGCCTGACGCATGTGCACTCCCAAGATTCAATGGGGAGGACATGCTGAGGAGGTTAAAGGGGAAAAAGATATTATTCGTAGGTGACTCTCTAAGCCTCAATCAGTGGCAATCGCTAACATGTATGTTGTATGCTGCAGTGCCGCAAACACATTATACTATAACAAGGAAAGAAGCCATCTCCACGTTTTCGTTGCCTGTTAACCCACATGTGAAGCTCAACGGCCACACATGCTCCATGTCATCCAATTTATGTTGTCCATTTGTTTGGCATGAAAAATCGTCACATGTGAATCGGTGTGAGGATGTGAAGGACAAAAAGTCTGGCATCATTTTAAAGGATAAACCTTGCAAGGGGCTTATAAGAGGGCTACTTCCCTTATTGCCAAATGGTTTTCGCCCAACGGCTACACATGCTCCCCTGTCACCAATTCTTGTTGTCTACGTATTTGGCTTAAAAATTCGCACATCTGAGTGGGCGTTTAAGAATGTGAAGGATTATGATGTTTCGGTTACGTTATCTCGCAATGCATTTTTGGTGGACCTAGTGAATACAGTAGTAGGCAGGGTTCTAAAGCTGGACTCTATTGAGAATGGGGACGCATGGAGAGGATACGATATGCTTATCTTTAATACTTGGCACTGGTGGCTGCATAAAGGAAGCAAACAACCATGGGACTACATTGAAGCAGGAGGTAAGATACTCAAGGATATGGATCGTTTAGTTGCTTTTAGGGAGGGATTAACTACTTGGTCAAAGTGGGTGGACTATAATGTTGATTTTAGCAACACCAAAGTTTTCTTTCAAGGGATTTCTCCGACCCACTACAATGGAAAAGAGTGGAATGAGTCAGACTCAGCAACTTGCAATGGACAAACTCAACCAGTAAGAGGTTCAATATATCCGGGAGGTTCACCACCGGCAGCAACTGTGGTAAACCAAGTGTTGACTGCCATGACATCCCCTAATTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

406

Amino Acids

46.0

Weight (kDa)

8.34

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	34 - 85	4.3e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	87 - 145	1.3e-18	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	240 - 397	1.7e-38	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	681
AciI	CCGC	2 cut(s)	42, 383
AclWI	GGATC	1 cut(s)	963
AcoI	YGGCCR	2 cut(s)	209, 463
AcsI	RAATTY	1 cut(s)	699
AfiI	CCNNNNNNNGG	3 cut(s)	70, 593, 1130
AflIII	ACRYGT	3 cut(s)	359, 448, 526
AgsI	TTSAA	5 cut(s)	116, 271, 926, 1046, 1137
AhdI	GACNNNNNGTC	1 cut(s)	559
AluBI	AGCT	4 cut(s)	141, 165, 457, 817
AluI	AGCT	4 cut(s)	141, 165, 457, 817
Alw21I	GWGCWC	1 cut(s)	259
Alw44I	GTGCAC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	963
AlwNI	CAGNNNCTG	1 cut(s)	1169
AoxI	GGCC	3 cut(s)	76, 209, 463
ApaLI	GTGCAC	1 cut(s)	255
ApeKI	GCWGC	4 cut(s)	165, 374, 889, 1163
ApoI	RAATTY	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	781
AsuC2I	CCSGG	1 cut(s)	1146
AsuHPI	GGTGA	3 cut(s)	335, 657, 1146
AvaII	GGWCC	1 cut(s)	781
BaeGI	GKGCMC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	4 cut(s)	152, 361, 876, 1175
BccI	CCATC	2 cut(s)	231, 425
BceAI	ACGGC	3 cut(s)	224, 478, 660
BciVI	GTATCC	1 cut(s)	845
BcnI	CCSGG	1 cut(s)	1146
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	845
BisI	GCNGC	6 cut(s)	42, 166, 375, 383, 890, 1164
BlsI	GCNGC	6 cut(s)	43, 167, 376, 384, 891, 1165
Bme1390I	CCNGG	1 cut(s)	1146
Bme18I	GGWCC	1 cut(s)	781
BmeRI	GACNNNNNGTC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	781
BmrFI	CCNGG	1 cut(s)	1146
BmsI	GCATC	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	1079, 1111
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	929
BpuMI	CCSGG	1 cut(s)	1146
BsaAI	YACGTR	1 cut(s)	685
BsaBI	GATNNNNATC	3 cut(s)	141, 222, 954
BsaJI	CCNNGG	1 cut(s)	911
BsaXI	ACNNNNNCTCC	4 cut(s)	458, 488, 640, 670
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 593, 1130
Bse118I	RCCGGY	1 cut(s)	1159
Bse1I	ACTGG	2 cut(s)	887, 1124
Bse3DI	GCAATG	2 cut(s)	772, 1114
Bse8I	GATNNNNATC	3 cut(s)	141, 222, 954
BseDI	CCNNGG	1 cut(s)	911
BseGI	GGATG	4 cut(s)	107, 482, 550, 1199
BseJI	GATNNNNATC	3 cut(s)	141, 222, 954
BseLI	CCNNNNNNNGG	3 cut(s)	70, 593, 1130
BseMI	GCAATG	2 cut(s)	772, 1114
BseMII	CTCAG	3 cut(s)	278, 702, 1110
BseNI	ACTGG	2 cut(s)	887, 1124
BseRI	GAGGAG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	4 cut(s)	152, 361, 876, 1175
BshFI	GGCC	3 cut(s)	78, 211, 465
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	1145, 1160
BslFI	GGGAC	2 cut(s)	851, 929
BslI	CCNNNNNNNGG	3 cut(s)	70, 593, 1130
BsmFI	GGGAC	2 cut(s)	851, 929
BsnI	GGCC	3 cut(s)	78, 211, 465
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	217, 955
Bsp19I	CCATGG	1 cut(s)	911
BspACI	CCGC	2 cut(s)	42, 383
BspANI	GGCC	3 cut(s)	78, 211, 465
BspCNI	CTCAG	3 cut(s)	279, 703, 1109
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	1 cut(s)	963
BsrBI	CCGCTC	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	772, 1114
BsrFI	RCCGGY	1 cut(s)	1159
BsrI	ACTGG	2 cut(s)	887, 1124
BssAI	RCCGGY	1 cut(s)	1159
BssECI	CCNNGG	1 cut(s)	911
BssMI	GATC	2 cut(s)	217, 955
BssT1I	CCWWGG	1 cut(s)	911
Bst4CI	ACNGT	2 cut(s)	796, 1171
Bst6I	CTCTTC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	685
BstDEI	CTNAG	4 cut(s)	287, 332, 711, 1096
BstDSI	CCRYGG	1 cut(s)	911
BstF5I	GGATG	4 cut(s)	107, 482, 550, 1199
BstKTI	GATC	2 cut(s)	220, 958
BstMBI	GATC	2 cut(s)	217, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	471, 653, 886
BstNSI	RCATGY	7 cut(s)	255, 286, 363, 452, 474, 530, 656
BstSCI	CCNGG	1 cut(s)	1144
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	259
BstSNI	TACGTA	1 cut(s)	685
BstV1I	GCAGC	4 cut(s)	152, 361, 876, 1175
BstXI	CCANNNNNNTGG	3 cut(s)	203, 507, 1070
BsuI	GTATCC	1 cut(s)	845
BsuRI	GGCC	3 cut(s)	78, 211, 465
BtgI	CCRYGG	1 cut(s)	911
BtsCI	GGATG	4 cut(s)	107, 482, 550, 1199
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	3 cut(s)	350, 384, 880
CaiI	CAGNNNCTG	1 cut(s)	1169
Cfr10I	RCCGGY	1 cut(s)	1159
Cfr13I	GGNCC	1 cut(s)	781
CseI	GACGC	2 cut(s)	257, 848
CspCI	CAANNNNNGTGG	2 cut(s)	984, 1019
DdeI	CTNAG	4 cut(s)	287, 332, 711, 1096
DpnI	GATC	2 cut(s)	219, 957
DpnII	GATC	2 cut(s)	217, 955
DraI	TTTAAA	1 cut(s)	576
DriI	GACNNNNNGTC	1 cut(s)	559
EaeI	YGGCCR	2 cut(s)	209, 463
Eam1104I	CTCTTC	1 cut(s)	177
Eam1105I	GACNNNNNGTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	177
Eco105I	TACGTA	1 cut(s)	685
Eco130I	CCWWGG	1 cut(s)	911
Eco47I	GGWCC	1 cut(s)	781
EcoT14I	CCWWGG	1 cut(s)	911
EcoT22I	ATGCAT	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	911
FaqI	GGGAC	2 cut(s)	851, 929
FauNDI	CATATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	6 cut(s)	42, 166, 375, 383, 890, 1164
FokI	GGATG	4 cut(s)	114, 469, 557, 1186
Fsp4HI	GCNGC	6 cut(s)	42, 166, 375, 383, 890, 1164
FspBI	CTAG	1 cut(s)	785
GluI	GCNGC	6 cut(s)	42, 166, 375, 383, 890, 1164
HaeIII	GGCC	3 cut(s)	78, 211, 465
HapII	CCGG	2 cut(s)	1145, 1160
HgaI	GACGC	2 cut(s)	257, 848
HincII	GTYRAC	2 cut(s)	442, 1188
HindII	GTYRAC	2 cut(s)	442, 1188
HinfI	GANTC	6 cut(s)	267, 326, 532, 821, 1088, 1094
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	1145, 1160
HphI	GGTGA	3 cut(s)	335, 657, 1146
Hpy166II	GTNNAC	8 cut(s)	257, 442, 682, 781, 1006, 1154, 1177, 1188
Hpy188I	TCNGA	3 cut(s)	712, 1059, 1093
Hpy8I	GTNNAC	8 cut(s)	257, 442, 682, 781, 1006, 1154, 1177, 1188
HpyAV	CCTTC	3 cut(s)	68, 544, 727
HpyCH4III	ACNGT	2 cut(s)	796, 1171
HpyCH4IV	ACGT	3 cut(s)	425, 684, 755
HpyCH4V	TGCA	8 cut(s)	16, 95, 257, 377, 591, 770, 892, 1107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	471, 653, 886
HpyF3I	CTNAG	4 cut(s)	287, 332, 711, 1096
HpySE526I	ACGT	3 cut(s)	425, 684, 755
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	217, 955
LmnI	GCTCC	2 cut(s)	479, 661
Lsp1109I	GCAGC	4 cut(s)	152, 361, 876, 1175
LweI	GCATC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	3 cut(s)	425, 684, 755
MaeIII	GTNAC	4 cut(s)	323, 522, 663, 751
MalI	GATC	2 cut(s)	219, 957
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	2 cut(s)	217, 955
MboII	GAAGA	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	4 cut(s)	487, 669, 699, 1207
MlyI	GAGTC	4 cut(s)	320, 815, 1088, 1097
MmeI	TCCRAC	1 cut(s)	1082
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	7 cut(s)	296, 441, 575, 695, 723, 870, 983
MslI	CAYNNNNRTG	2 cut(s)	712, 1068
MspI	CCGG	2 cut(s)	1145, 1160
MspR9I	CCNGG	1 cut(s)	1146
MwoI	GCNNNNNNNGC	3 cut(s)	471, 653, 886
NciI	CCSGG	1 cut(s)	1146
NcoI	CCATGG	1 cut(s)	911
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	217, 955
NmuCI	GTSAC	3 cut(s)	323, 522, 663
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	7 cut(s)	255, 286, 363, 452, 474, 530, 656
PciI	ACATGT	3 cut(s)	359, 448, 526
PfeI	GAWTC	2 cut(s)	267, 532
PfoI	TCCNGGA	1 cut(s)	1144
PkrI	GCNGC	6 cut(s)	43, 167, 376, 384, 891, 1165
PleI	GAGTC	4 cut(s)	320, 815, 1088, 1096
PpsI	GAGTC	4 cut(s)	320, 815, 1088, 1096
Ppu21I	YACGTR	1 cut(s)	685
PscI	ACATGT	3 cut(s)	359, 448, 526
PsiI	TTATAA	1 cut(s)	602
PspPI	GGNCC	1 cut(s)	781
PsrI	GAACNNNNNNTAC	2 cut(s)	792, 824
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	1169
RseI	CAYNNNNRTG	2 cut(s)	712, 1068
SaqAI	TTAA	7 cut(s)	296, 441, 575, 695, 723, 870, 983
SatI	GCNGC	6 cut(s)	42, 166, 375, 383, 890, 1164
Sau3AI	GATC	2 cut(s)	217, 955
Sau96I	GGNCC	1 cut(s)	781
SchI	GAGTC	4 cut(s)	320, 815, 1088, 1097
ScrFI	CCNGG	1 cut(s)	1146
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	781
SmiMI	CAYNNNNRTG	2 cut(s)	712, 1068
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SnaBI	TACGTA	1 cut(s)	685
Sse9I	AATT	4 cut(s)	487, 669, 699, 1207
SsiI	CCGC	2 cut(s)	42, 383
SspI	AATATT	1 cut(s)	83
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	1 cut(s)	1144
StyI	CCWWGG	1 cut(s)	911
TaaI	ACNGT	2 cut(s)	796, 1171
TaiI	ACGT	3 cut(s)	428, 687, 758
TaqI	TCGA	1 cut(s)	161
TasI	AATT	4 cut(s)	487, 669, 699, 1207
TauI	GCSGC	2 cut(s)	44, 385
TfiI	GAWTC	2 cut(s)	267, 532
Tru1I	TTAA	7 cut(s)	296, 441, 575, 695, 723, 870, 983
Tru9I	TTAA	7 cut(s)	296, 441, 575, 695, 723, 870, 983
TscAI	CASTG	3 cut(s)	350, 384, 887
TseFI	GTSAC	3 cut(s)	323, 522, 663
TseI	GCWGC	4 cut(s)	165, 374, 889, 1163
Tsp45I	GTSAC	3 cut(s)	323, 522, 663
TspDTI	ATGAA	2 cut(s)	78, 528
TspRI	CASTG	3 cut(s)	350, 384, 887
VneI	GTGCAC	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	781
XapI	RAATTY	1 cut(s)	699
XceI	RCATGY	7 cut(s)	255, 286, 363, 452, 474, 530, 656
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	1 cut(s)	785
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.