Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002416

Physical Location & Seq

Genomic Coordinates Reverse (-)

23361827 .. 23364490

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG206200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGGGAAAATGTTGAATGGCTTTGGCCTATTTGTTTATGCTGTTCTAATACTAATCTTATTGCTTCTTGAACATGAAAACCAATATTGCTTTGCAGGAGTACTAGAGAAGAAGAACAATGAGTCGCAAATCGGCACCAAATGCGACTTGTTTGATGGGAGTTGGATTTACGATGATACATACCCACTCTACGACACATCCAGCTGCCCTTTTATTGACAGAGAGTTCGACTGTCAGAAAAATGGACGCCCGGATAGTCAATATCTCAAGTATAGATGGAAGCCTAAGGGTTGTGCATTGCCCAGATTCAATGGTCAGGACTTCTTGAGGAGATTAAAGGGGAAGAAGATATTATTCGTAGGGGACTCTCTGAGCTATAACCAGTGGCAGTCACTAACATGTATGCTGCATTCTGCAGTACCCAAAACCAAATATACTTCATCCAGTAAAGGAGATTTCTATACGTTTCTTTTGCCAGAATATGAAGTTTCTGTGATGTTTTCTCGCAATAAGTTTCTAGTGGATCTGGTCCAAACAAAGGAGGGCATGGTTCTAAACCTTGACTCTATTGAAGGAGGAAAGTTGTGGAAAGGATACGACATGCTAATCTTCAATACCTGGCATTGGTGGGTCCATACGGGACGCAATCAACCATGGAAGTACATTGAATCGGGAGGCAAGATACTGAAGGATATGGATCGTCTGGCTGCGTTTAGAGAGGGATTAACTACTTGGTCCAAATGGGTCGATTCTAACGTTGGCAACACCAAAGTTTTCTTTCAGGGCATCTCTCCAACTCATTTCAATGGAGAGGAATGGGGAGGGCAAAAATCATCAAACTGCATAGGACAAACTCAACCTGTTAATGGTTCAACATATCCTGGAGGTTCACCACCACCGGCAGCGGTGGTCCATGAAGTATTGAACAAAATGTCACAGCCAGTAACTCTGTTGGACATAACGTTACTATCCCAACTGAGAAAAGATGGTCACCCATCTCTATATGGCATAGATGGCAAAAAGGGAAGTGACTGTAGCCATTGGTGTCTTGCTGGTGTTCCGGACACATGGAATGAACTATTCTATGCAATTCTTGTGACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

368

Amino Acids

41.84

Weight (kDa)

7.97

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	47 - 98	5.6e-25	PMR5 N terminal Domain
PC-Esterase	PF13839	100 - 363	1.2e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14850 AT3G14850
fragaria_vesca	FvH4_3g17810 FvH4_3g17820 FvH4_3g17830
malus_domestica	MD03G1246700.v1.1 MD11G1262000.v1.1 MD11G1268700.v1.1 MD11G1268800.v1.1 MD11G1268900.v1.1
prunus_persica	Prupe.4G157200_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157400_v2.0.a1 Prupe.4G157500_v2.0.a1 Prupe.4G157600_v2.0.a1
pyrus_communis	pycom03g19570 pycom11g23100 pycom11g23770
rosa_chinensis	RchiOBHm_Chr5g0029591 RchiOBHm_Chr5g0029601 RchiOBHm_Chr5g0029611
rosa_laevigata	RLG00000033185 RLG00000033186 RLG00000033187
rosa_multiflora	Rmu_sc0001608.1_g000005 Rmu_sc0001608.1_g000006
rosa_roxburghii	Rroxscaffold_1G00050310 Rroxscaffold_1G00050320
rosa_samantha	Rh5AG207700 Rh5BG206200 Rh5BG206300 Rh5BG206400 Rh5CG228300 Rh5CG228400 Rh5CG228500 Rh5DG210000 Rh5DG210100
rosa_wichuraiana	Rw5G018880 Rw5G018890 Rw5G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	1060
AciI	CCGC	1 cut(s)	905
AclI	AACGTT	2 cut(s)	756, 962
AclWI	GGATC	2 cut(s)	531, 705
AcuI	CTGAAG	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	3 cut(s)	102, 420, 662
AfiI	CCNNNNNNNGG	3 cut(s)	538, 624, 866
AflIII	ACRYGT	1 cut(s)	398
AgsI	TTSAA	9 cut(s)	16, 71, 310, 572, 613, 668, 805, 873, 925
AjnI	CCWGG	2 cut(s)	617, 880
AluBI	AGCT	2 cut(s)	204, 375
AluI	AGCT	2 cut(s)	204, 375
AlwI	GGATC	2 cut(s)	531, 705
Aor13HI	TCCGGA	1 cut(s)	1060
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	4 cut(s)	204, 406, 707, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspS9I	GGNCC	4 cut(s)	529, 631, 735, 910
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	882, 983
AvaII	GGWCC	4 cut(s)	529, 631, 735, 910
AxyI	CCTNAGG	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	191, 393, 694, 914
BccI	CCATC	5 cut(s)	149, 270, 980, 1003, 1007
BciT130I	CCWGG	2 cut(s)	619, 882
BciVI	GTATCC	1 cut(s)	587
BcnI	CCSGG	1 cut(s)	251
BfaI	CTAG	2 cut(s)	104, 518
BfmI	CTRYAG	2 cut(s)	414, 1033
BfuI	GTATCC	1 cut(s)	587
BisI	GCNGC	4 cut(s)	205, 407, 708, 903
BlsI	GCNGC	4 cut(s)	206, 408, 709, 904
BmcAI	AGTACT	1 cut(s)	102
Bme1390I	CCNGG	3 cut(s)	251, 619, 882
Bme18I	GGWCC	4 cut(s)	529, 631, 735, 910
BmgT120I	GGNCC	4 cut(s)	529, 631, 735, 910
BmiI	GGNNCC	2 cut(s)	136, 632
BmrFI	CCNGG	3 cut(s)	251, 619, 882
BmsI	GCATC	1 cut(s)	795
BpmI	CTGGAG	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	251, 346
BpuMI	CCSGG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	653
BsaWI	WCCGGW	1 cut(s)	1060
Bsc4I	CCNNNNNNNGG	3 cut(s)	538, 624, 866
Bse118I	RCCGGY	1 cut(s)	898
Bse1I	ACTGG	3 cut(s)	382, 444, 941
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	1060
BseBI	CCWGG	2 cut(s)	619, 882
BseDI	CCNNGG	1 cut(s)	653
BseGI	GGATG	2 cut(s)	197, 440
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	3 cut(s)	538, 624, 866
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	2 cut(s)	362, 968
BseNI	ACTGG	3 cut(s)	382, 444, 941
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	4 cut(s)	191, 393, 694, 914
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	251, 899, 1061
BslFI	GGGAC	2 cut(s)	377, 654
BslI	CCNNNNNNNGG	3 cut(s)	538, 624, 866
BsmFI	GGGAC	2 cut(s)	377, 654
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	27
Bsp13I	TCCGGA	1 cut(s)	1060
Bsp143I	GATC	2 cut(s)	523, 697
Bsp19I	CCATGG	1 cut(s)	653
BspACI	CCGC	1 cut(s)	905
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	363, 969
BspEI	TCCGGA	1 cut(s)	1060
BspLI	GGNNCC	2 cut(s)	136, 632
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	2 cut(s)	531, 705
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	898
BsrI	ACTGG	3 cut(s)	382, 444, 941
BssAI	RCCGGY	1 cut(s)	898
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	2 cut(s)	523, 697
BssNI	GRCGYC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	653
Bst2UI	CCWGG	2 cut(s)	619, 882
Bst4CI	ACNGT	2 cut(s)	233, 1034
BstACI	GRCGYC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstDEI	CTNAG	3 cut(s)	285, 371, 977
BstDSI	CCRYGG	1 cut(s)	653
BstEII	GGTNACC	1 cut(s)	989
BstF5I	GGATG	2 cut(s)	197, 440
BstKTI	GATC	2 cut(s)	526, 700
BstMBI	GATC	2 cut(s)	523, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 1014
BstNI	CCWGG	2 cut(s)	619, 882
BstNSI	RCATGY	2 cut(s)	402, 604
BstPI	GGTNACC	1 cut(s)	989
BstSCI	CCNGG	3 cut(s)	249, 617, 880
BstSFI	CTRYAG	2 cut(s)	414, 1033
BstV1I	GCAGC	4 cut(s)	191, 393, 694, 914
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	653
BtsCI	GGATG	2 cut(s)	197, 440
BtsIMutI	CAGTG	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	898
Cfr13I	GGNCC	4 cut(s)	529, 631, 735, 910
CseI	GACGC	2 cut(s)	255, 651
Csp6I	GTAC	3 cut(s)	101, 419, 661
CviAII	CATG	7 cut(s)	74, 399, 547, 601, 654, 914, 1068
CviJI	RGCY	8 cut(s)	21, 27, 204, 283, 375, 707, 940, 1038
CviKI_1	RGCY	8 cut(s)	21, 27, 204, 283, 375, 707, 940, 1038
CviQI	GTAC	3 cut(s)	101, 419, 661
DdeI	CTNAG	3 cut(s)	285, 371, 977
DpnI	GATC	2 cut(s)	525, 699
DpnII	GATC	2 cut(s)	523, 697
Eco130I	CCWWGG	1 cut(s)	653
Eco47I	GGWCC	4 cut(s)	529, 631, 735, 910
Eco57I	CTGAAG	1 cut(s)	707
Eco81I	CCTNAGG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	989
EcoO65I	GGTNACC	1 cut(s)	989
EcoRII	CCWGG	2 cut(s)	617, 880
EcoT14I	CCWWGG	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	653
FaeI	CATG	7 cut(s)	77, 402, 550, 604, 657, 917, 1071
FaqI	GGGAC	2 cut(s)	377, 654
FatI	CATG	7 cut(s)	73, 398, 546, 600, 653, 913, 1067
Fnu4HI	GCNGC	4 cut(s)	205, 407, 708, 903
FokI	GGATG	2 cut(s)	184, 427
Fsp4HI	GCNGC	4 cut(s)	205, 407, 708, 903
FspBI	CTAG	2 cut(s)	104, 518
GluI	GCNGC	4 cut(s)	205, 407, 708, 903
GsuI	CTGGAG	1 cut(s)	903
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	3 cut(s)	251, 899, 1061
HgaI	GACGC	2 cut(s)	255, 651
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	7 cut(s)	77, 402, 550, 604, 657, 917, 1071
HinfI	GANTC	6 cut(s)	122, 306, 365, 563, 668, 749
HpaII	CCGG	3 cut(s)	251, 899, 1061
HphI	GGTGA	2 cut(s)	882, 983
Hpy166II	GTNNAC	1 cut(s)	890
Hpy188I	TCNGA	2 cut(s)	237, 372
Hpy188III	TCNNGA	5 cut(s)	68, 317, 325, 672, 1061
Hpy8I	GTNNAC	1 cut(s)	890
HpyAV	CCTTC	2 cut(s)	566, 682
HpyCH4III	ACNGT	2 cut(s)	233, 1034
HpyCH4IV	ACGT	3 cut(s)	464, 756, 962
HpyCH4V	TGCA	6 cut(s)	95, 296, 409, 416, 843, 1088
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 1014
HpyF3I	CTNAG	3 cut(s)	285, 371, 977
HpySE526I	ACGT	3 cut(s)	464, 756, 962
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	7 cut(s)	77, 402, 550, 604, 657, 917, 1071
Kpn2I	TCCGGA	1 cut(s)	1060
Kzo9I	GATC	2 cut(s)	523, 697
Lsp1109I	GCAGC	4 cut(s)	191, 393, 694, 914
LweI	GCATC	1 cut(s)	795
MaeI	CTAG	2 cut(s)	104, 518
MaeII	ACGT	3 cut(s)	464, 756, 962
MaeIII	GTNAC	7 cut(s)	390, 933, 943, 963, 989, 1028, 1096
MalI	GATC	2 cut(s)	525, 699
MboI	GATC	2 cut(s)	523, 697
MboII	GAAGA	5 cut(s)	121, 124, 355, 358, 601
MflI	RGATCY	1 cut(s)	523
MluCI	AATT	1 cut(s)	1089
MlyI	GAGTC	3 cut(s)	131, 359, 557
MmeI	TCCRAC	3 cut(s)	143, 818, 933
MnlI	CCTC	8 cut(s)	321, 535, 569, 668, 712, 805, 815, 878
MroI	TCCGGA	1 cut(s)	1060
MseI	TTAA	4 cut(s)	335, 725, 864, 1105
MslI	CAYNNNNRTG	2 cut(s)	397, 804
MspA1I	CMGCKG	2 cut(s)	204, 905
MspI	CCGG	3 cut(s)	251, 899, 1061
MspR9I	CCNGG	3 cut(s)	251, 619, 882
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	2 cut(s)	619, 882
MwoI	GCNNNNNNNGC	2 cut(s)	141, 1014
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	653
NdeII	GATC	2 cut(s)	523, 697
NlaIII	CATG	7 cut(s)	77, 402, 550, 604, 657, 917, 1071
NlaIV	GGNNCC	2 cut(s)	136, 632
NmuCI	GTSAC	5 cut(s)	390, 933, 989, 1028, 1096
NspI	RCATGY	2 cut(s)	402, 604
PciI	ACATGT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	753
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	306, 668, 749
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	4 cut(s)	206, 408, 709, 904
PleI	GAGTC	3 cut(s)	130, 359, 557
PpsI	GAGTC	3 cut(s)	130, 359, 557
PscI	ACATGT	1 cut(s)	398
Psp1406I	AACGTT	2 cut(s)	756, 962
Psp6I	CCWGG	2 cut(s)	617, 880
PspEI	GGTNACC	1 cut(s)	989
PspGI	CCWGG	2 cut(s)	617, 880
PspN4I	GGNNCC	2 cut(s)	136, 632
PspPI	GGNCC	4 cut(s)	529, 631, 735, 910
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	204
RsaI	GTAC	3 cut(s)	102, 420, 662
RsaNI	GTAC	3 cut(s)	101, 419, 661
RseI	CAYNNNNRTG	2 cut(s)	397, 804
SaqAI	TTAA	4 cut(s)	335, 725, 864, 1105
SatI	GCNGC	4 cut(s)	205, 407, 708, 903
Sau3AI	GATC	2 cut(s)	523, 697
Sau96I	GGNCC	4 cut(s)	529, 631, 735, 910
ScaI	AGTACT	1 cut(s)	102
SchI	GAGTC	3 cut(s)	131, 359, 557
ScrFI	CCNGG	3 cut(s)	251, 619, 882
SetI	ASST	9 cut(s)	206, 377, 467, 561, 620, 759, 862, 889, 965
SfaNI	GCATC	1 cut(s)	795
SfcI	CTRYAG	2 cut(s)	414, 1033
SinI	GGWCC	4 cut(s)	529, 631, 735, 910
SmiMI	CAYNNNNRTG	2 cut(s)	397, 804
SmlI	CTYRAG	2 cut(s)	266, 325
SmoI	CTYRAG	2 cut(s)	266, 325
Sse9I	AATT	1 cut(s)	1089
SsiI	CCGC	1 cut(s)	905
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	2 cut(s)	104, 518
StyD4I	CCNGG	3 cut(s)	249, 617, 880
StyI	CCWWGG	1 cut(s)	653
TaaI	ACNGT	2 cut(s)	233, 1034
TaiI	ACGT	3 cut(s)	467, 759, 965
TaqI	TCGA	2 cut(s)	228, 747
TasI	AATT	1 cut(s)	1089
TatI	WGTACW	2 cut(s)	100, 660
TfiI	GAWTC	3 cut(s)	306, 668, 749
Tru1I	TTAA	4 cut(s)	335, 725, 864, 1105
Tru9I	TTAA	4 cut(s)	335, 725, 864, 1105
TscAI	CASTG	1 cut(s)	389
TseFI	GTSAC	5 cut(s)	390, 933, 989, 1028, 1096
TseI	GCWGC	4 cut(s)	204, 406, 707, 902
Tsp45I	GTSAC	5 cut(s)	390, 933, 989, 1028, 1096
TspDTI	ATGAA	5 cut(s)	90, 429, 498, 930, 1089
TspRI	CASTG	1 cut(s)	389
VpaK11BI	GGWCC	4 cut(s)	529, 631, 735, 910
XceI	RCATGY	2 cut(s)	402, 604
XspI	CTAG	2 cut(s)	104, 518
ZrmI	AGTACT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.